Information report for AT3G04070
Gene Details
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Functional Descriptions
- PO:0005052 — plant callus — callo (Spanish, exact), portion of plant callus tissue (exact), 植物カルス (Japanese, exact), callus (broad)
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0010365 — involved in — positive regulation of ethylene biosynthetic process
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0005634 — located in — nucleus
- GO:0009793 — involved in — embryo development ending in seed dormancy
- GO:0009413 — involved in — response to flooding
- GO:0003677 — enables — DNA binding
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DOI: 10.1093/dnares/10.6.239 ; PMID: 15029955
- Detoxification and transcriptome response in Arabidopsis seedlings exposed to the allelochemical benzoxazolin-2(3H)-one. DOI: 10.1074/jbc.M500694200 ; PMID: 15824099
- The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis. DOI: 10.1111/j.1365-313X.2005.02488.x ; PMID: 16115070
- The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth. DOI: 10.1105/tpc.106.041319 ; PMID: 17329565
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument regulate embryogenesis in Arabidopsis. DOI: 10.1105/tpc.108.060160 ; PMID: 18849494
- A genome-wide transcriptome profiling reveals the early molecular events during callus initiation in Arabidopsis multiple organs. DOI: 10.1016/j.ygeno.2012.05.013 ; PMID: 22664253
- γ-Aminobutyric acid transaminase deficiency impairs central carbon metabolism and leads to cell wall defects during salt stress in Arabidopsis roots. DOI: 10.1111/pce.12033 ; PMID: 23148892
- Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. DOI: 10.1104/pp.113.223511 ; PMID: 23858430
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- NAC transcription factor speedy hyponastic growth regulates flooding-induced leaf movement in Arabidopsis. DOI: 10.1105/tpc.113.117861 ; PMID: 24363315
- Gene regulatory cascade of senescence-associated NAC transcription factors activated by ETHYLENE-INSENSITIVE2-mediated leaf senescence signalling in Arabidopsis. DOI: 10.1093/jxb/eru112 ; PMID: 24659488
- Promoter-based integration in plant defense regulation. DOI: 10.1104/pp.114.248716 ; PMID: 25352272
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. DOI: 10.1016/j.devcel.2016.09.031 ; PMID: 27923776
- Transcriptional regulation of nitrogen-associated metabolism and growth. DOI: 10.1038/s41586-018-0656-3 ; PMID: 30356219
- Fertility loss in senescing Arabidopsis ovules is controlled by the maternal sporophyte via a NAC transcription factor triad. DOI: 10.1073/pnas.2219868120 ; PMID: 37307449
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: A0A654F407
- EMBL: CACRSJ010000106
- AlphaFoldDB: A0A654F407
- EnsemblPlants: AT3G04070.1
- Gramene: AT3G04070.1
- KEGG: ath:AT3G04070
- ExpressionAtlas: AT3G04070
- InterPro: IPR003441, IPR036093
- PANTHER: PTHR31719, PTHR31719:SF201
- SUPFAM: SSF101941
- PROSITE: PS51005
- Gene3D: 2.170.150.80
- SWISS-MODEL: A0A654F407
Homologs
- Brassica napus GSBRNA2T00044505001, GSBRNA2T00097709001, GSBRNA2T00075632001
- Brassica oleracea XP_013639766.1, XP_013585389.1
- Brassica rapa XP_009125011.1, XP_009130419.1
- Raphanus raphanistrum RrC11344_p1
Sequences
cDNA Sequence
- >AT3G04070.1
ACTTTACAGAAAATAATATTCTATATTTTTCATAAATATTTCAATCTCAATTTTCTTTAAAAAATTATACATTCAAGCACTAAACGACAGAACTCTACACACCATAAATTGCCCTCAAAACCTGCTCTACGAAAAATTTCAATCTTTGGCTCACTTCTTTGTTTATCTCATAGCTCTTCACCAAAACCAATATTTTCTCCTTTGTTGTTCTTTCTTTTCTATCAAAACTTTCTACTTAAAATATCATTCCTTTAAACAATGATAAGCAAGGATCCAAGATCGAGTTTACCTCCAGGGTTTCGATTTCATCCAACAGATGAAGAACTCATTCTCCATTACCTAAGGAAGAAAGTTTCCTCTTCCCCAGTCCCGCTTTCGATTATCGCCGATGTCGATATCTACAAATCCGATCCATGGGATTTACCAGCTAAGGCTCCATTTGGGGAGAAAGAGTGGTATTTTTTCAGTCCGAGGGATAGGAAATATCCAAACGGAGCAAGACCAAACAGAGCAGCTGCGTCTGGATATTGGAAAGCAACCGGAACAGATAAATTGATTGCGGTACCAAATGGTGAAGGGTTTCATGAAAACATTGGTATAAAAAAAGCTCTTGTGTTTTATAGAGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCATGAATATCGTCTTGCCGATTCATTATCTCCCAAAAGAATTAACTCTTCTAGGAGCGGTGGTAGCGAAGTTAATAATAATTTTGGAGATAGGAATTCTAAAGAATATTCGATGAGACTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAATCACACGCTTCATTGTCATCACCTGATGTTGCTTTGGTCACAAGCAATCAAGAGCATGAGGAAAATGACAACGAACCATTCGTAGACCGCGGAACCTTTTTGCCAAATTTGCAAAATGATCAACCCCTTAAACGCCAGAAGTCTTCTTGTTCGTTCTCAAACTTACTAGACGCTACAGATTTGACGTTTCTCGCAAATTTTCTAAACGAAACCCCGGAAAATCGTTCTGAATCAGATTTTTCTTTCATGATTGGCAATTTCTCTAATCCTGACATTTACGGAAACCATTACTTGGATCAGAAGTTACCGCAGTTGAGCTCTCCCACTTCAGAGACAAGCGGCATCGGAAGCAAAAGAGAGAGAGTGGATTTTGCGGAAGAAACGATAAACGCTTCGAAGAAGATGATGAACACATATAGTTACAATAATAGTATAGATCAAATGGATCATAGTATGATGCAACAACCTAGTTTCCTGAACCAGGAACTCATGATGAGTTCTCACCTTCAATATCAAGGCTAGAGAGAATATTAATTTGAAAACCTAATCACGAATTAGGGATCATTCGGTATGTGATTGAAAAGTAGGAGTCGTTGTTAGTAATTTACCAAACTATTGTGGGAAAAAAAGAAGGAAAGATATTTATTTTATAGAATATTATGGTTCAATTTCTCTTCTTCTCATTTTCTTTAAAACAATTTTTCATATTATAAAGTTTCGTAACGATACTATAATTAAATGATAATAATAAAGATTAGTACAATTTAGTTGGACGGTTTACGATTGCGCGGTCTC - >AT3G04070.2
ACTTTACAGAAAATAATATTCTATATTTTTCATAAATATTTCAATCTCAATTTTCTTTAAAAAATTATACATTCAAGCACTAAACGACAGAACTCTACACACCATAAATTGCCCTCAAAACCTGCTCTACGAAAAATTTCAATCTTTGGCTCACTTCTTTGTTTATCTCATAGCTCTTCACCAAAACCAATATTTTCTCCTTTGTTGTTCTTTCTTTTCTATCAAAACTTTCTACTTAAAATATCATTCCTTTAAACAATGATAAGCAAGGATCCAAGATCGAGTTTACCTCCAGGGTTTCGATTTCATCCAACAGATGAAGAACTCATTCTCCATTACCTAAGGAAGAAAGTTTCCTCTTCCCCAGTCCCGCTTTCGATTATCGCCGATGTCGATATCTACAAATCCGATCCATGGGATTTACCAGCTAAGGCTCCATTTGGGGAGAAAGAGTGGTATTTTTTCAGTCCGAGGGATAGGAAATATCCAAACGGAGCAAGACCAAACAGAGCAGCTGCGTCTGGATATTGGAAAGCAACCGGAACAGATAAATTGATTGCGGTACCAAATGGTGAAGGGTTTCATGAAAACATTGGTATAAAAAAAGCTCTTGTGTTTTATAGAGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCATGAATATCGTCTTGCCGATTCATTATCTCCCAAAAGAATTAACTCTTCTAGGAGCGGTGGTAGCGAAGTTAATAATAATTTTGGAGATAGGAATTCTAAAGAATATTCGATGAGACTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAATCACACGCTTCATTGTCATCACCTGATGTTGCTTTGGTCACAAGCAATCAAGAGCATGAGGAAAATGACAACGAACCATTCGTAGACCGCGGAACCTTTTTGCCAAATTTGCAAAATGATCAACCCCTTAAACGCCAGAAGTCTTCTTGTTCGTTCTCAAACTTACTAGACGCTACAGATTTGACGTTTCTCGCAAATTTTCTAAACGAAACCCCGGAAAATCGTTCTGAATCAGATTTTTCTTTCATGATTGGCAATTTCTCTAATCCTGACATTTACGGAAACCATTACTTGGATCAGAAGTTACCGCAGTTGAGCTCTCCCACTTCAGAGACAAGCGGCATCGGAAGCAAAAGAGAGAGAGTGGATTTTGCGGAAGAAACGATAAACGCTTCGAAGAAGATGATGAACACATATAGTTACAATAATAGTATAGATCAAATGGATCATAGTATGATGCAACAACCTAGTTTCCTGAACCAGGAACTCATGATGAGTTCTCACCTTCAATATCAAGGCTAGAGAGAATATTAATTTGAAAACCTAATCACGAATTAGGGATCATTCGGTATGTGATTGAAAAGTAGGAGTCGTTGTTAGTAATTTACCAAACTATTGTGGGAAAAAAAGAAGGAAAGATATTTATTTTATAGAATATTATGGTTCAATTTCTCTTCTTCTCATTTTCTTTAAAACAATTTTTCATATTATAAAGTTTCGTAACGATACTATAATTAAATGATAATAATAAAGATTAGTACAATTTAGTTGGACGGTTTACGATTGCGCGGTCTC
CDS Sequence
- >AT3G04070.1
ATGATAAGCAAGGATCCAAGATCGAGTTTACCTCCAGGGTTTCGATTTCATCCAACAGATGAAGAACTCATTCTCCATTACCTAAGGAAGAAAGTTTCCTCTTCCCCAGTCCCGCTTTCGATTATCGCCGATGTCGATATCTACAAATCCGATCCATGGGATTTACCAGCTAAGGCTCCATTTGGGGAGAAAGAGTGGTATTTTTTCAGTCCGAGGGATAGGAAATATCCAAACGGAGCAAGACCAAACAGAGCAGCTGCGTCTGGATATTGGAAAGCAACCGGAACAGATAAATTGATTGCGGTACCAAATGGTGAAGGGTTTCATGAAAACATTGGTATAAAAAAAGCTCTTGTGTTTTATAGAGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCATGAATATCGTCTTGCCGATTCATTATCTCCCAAAAGAATTAACTCTTCTAGGAGCGGTGGTAGCGAAGTTAATAATAATTTTGGAGATAGGAATTCTAAAGAATATTCGATGAGACTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAATCACACGCTTCATTGTCATCACCTGATGTTGCTTTGGTCACAAGCAATCAAGAGCATGAGGAAAATGACAACGAACCATTCGTAGACCGCGGAACCTTTTTGCCAAATTTGCAAAATGATCAACCCCTTAAACGCCAGAAGTCTTCTTGTTCGTTCTCAAACTTACTAGACGCTACAGATTTGACGTTTCTCGCAAATTTTCTAAACGAAACCCCGGAAAATCGTTCTGAATCAGATTTTTCTTTCATGATTGGCAATTTCTCTAATCCTGACATTTACGGAAACCATTACTTGGATCAGAAGTTACCGCAGTTGAGCTCTCCCACTTCAGAGACAAGCGGCATCGGAAGCAAAAGAGAGAGAGTGGATTTTGCGGAAGAAACGATAAACGCTTCGAAGAAGATGATGAACACATATAGTTACAATAATAGTATAGATCAAATGGATCATAGTATGATGCAACAACCTAGTTTCCTGAACCAGGAACTCATGATGAGTTCTCACCTTCAATATCAAGGCTAG - >AT3G04070.2
ATGATAAGCAAGGATCCAAGATCGAGTTTACCTCCAGGGTTTCGATTTCATCCAACAGATGAAGAACTCATTCTCCATTACCTAAGGAAGAAAGTTTCCTCTTCCCCAGTCCCGCTTTCGATTATCGCCGATGTCGATATCTACAAATCCGATCCATGGGATTTACCAGCTAAGGCTCCATTTGGGGAGAAAGAGTGGTATTTTTTCAGTCCGAGGGATAGGAAATATCCAAACGGAGCAAGACCAAACAGAGCAGCTGCGTCTGGATATTGGAAAGCAACCGGAACAGATAAATTGATTGCGGTACCAAATGGTGAAGGGTTTCATGAAAACATTGGTATAAAAAAAGCTCTTGTGTTTTATAGAGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCATGAATATCGTCTTGCCGATTCATTATCTCCCAAAAGAATTAACTCTTCTAGGAGCGGTGGTAGCGAAGTTAATAATAATTTTGGAGATAGGAATTCTAAAGAATATTCGATGAGACTGGATGATTGGGTTCTTTGCCGGATTTACAAGAAATCACACGCTTCATTGTCATCACCTGATGTTGCTTTGGTCACAAGCAATCAAGAGCATGAGGAAAATGACAACGAACCATTCGTAGACCGCGGAACCTTTTTGCCAAATTTGCAAAATGATCAACCCCTTAAACGCCAGAAGTCTTCTTGTTCGTTCTCAAACTTACTAGACGCTACAGATTTGACGTTTCTCGCAAATTTTCTAAACGAAACCCCGGAAAATCGTTCTGAATCAGATTTTTCTTTCATGATTGGCAATTTCTCTAATCCTGACATTTACGGAAACCATTACTTGGATCAGAAGTTACCGCAGTTGAGCTCTCCCACTTCAGAGACAAGCGGCATCGGAAGCAAAAGAGAGAGAGTGGATTTTGCGGAAGAAACGATAAACGCTTCGAAGAAGATGATGAACACATATAGTTACAATAATAGTATAGATCAAATGGATCATAGTATGATGCAACAACCTAGTTTCCTGAACCAGGAACTCATGATGAGTTCTCACCTTCAATATCAAGGCTAG
Protein Sequence
- >AT3G04070.1
MISKDPRSSLPPGFRFHPTDEELILHYLRKKVSSSPVPLSIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPNGEGFHENIGIKKALVFYRGKPPKGVKTNWIMHEYRLADSLSPKRINSSRSGGSEVNNNFGDRNSKEYSMRLDDWVLCRIYKKSHASLSSPDVALVTSNQEHEENDNEPFVDRGTFLPNLQNDQPLKRQKSSCSFSNLLDATDLTFLANFLNETPENRSESDFSFMIGNFSNPDIYGNHYLDQKLPQLSSPTSETSGIGSKRERVDFAEETINASKKMMNTYSYNNSIDQMDHSMMQQPSFLNQELMMSSHLQYQG - >AT3G04070.2
MISKDPRSSLPPGFRFHPTDEELILHYLRKKVSSSPVPLSIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPNGEGFHENIGIKKALVFYRGKPPKGVKTNWIMHEYRLADSLSPKRINSSRSGGSEVNNNFGDRNSKEYSMRLDDWVLCRIYKKSHASLSSPDVALVTSNQEHEENDNEPFVDRGTFLPNLQNDQPLKRQKSSCSFSNLLDATDLTFLANFLNETPENRSESDFSFMIGNFSNPDIYGNHYLDQKLPQLSSPTSETSGIGSKRERVDFAEETINASKKMMNTYSYNNSIDQMDHSMMQQPSFLNQELMMSSHLQYQG