Information report for AT3G04060
Gene Details
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Functional Descriptions
- GO:1903648 — acts upstream of or within — positive regulation of chlorophyll catabolic process
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0005634 — located in — nucleus
- GO:1900057 — acts upstream of or within — positive regulation of leaf senescence
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0005515 — enables — protein binding
- SM_3_27647 — Slightly larger than WT, increased Chl content,increased amounts of photosynthetic proteins.
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DOI: 10.1093/dnares/10.6.239 ; PMID: 15029955
- Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance. DOI: 10.1111/j.1365-313X.2006.02672.x ; PMID: 16553893
- Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling. DOI: 10.1111/j.1365-313X.2006.02756.x ; PMID: 16805732
- ATR and ATM play both distinct and additive roles in response to ionizing radiation. DOI: 10.1111/j.1365-313X.2006.02931.x ; PMID: 17227549
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. DOI: 10.1104/pp.113.223511 ; PMID: 23858430
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- Protein intrinsic disorder in Arabidopsis NAC transcription factors: transcriptional activation by ANAC013 and ANAC046 and their interactions with RCD1. DOI: 10.1042/BJ20141045 ; PMID: 25348421
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1. DOI: 10.1074/jbc.M116.753426 ; PMID: 27881680
- NAC Transcription Factors ANAC087 and ANAC046 Control Distinct Aspects of Programmed Cell Death in the Arabidopsis Columella and Lateral Root Cap. DOI: 10.1105/tpc.18.00293 ; PMID: 30099383
- Evolutionary conservation of the intrinsic disorder-based Radical-Induced Cell Death1 hub interactome. DOI: 10.1038/s41598-019-55385-3 ; PMID: 31831797
- Overexpression of ANAC046 Promotes Suberin Biosynthesis in Roots of Arabidopsis thaliana. DOI: 10.3390/ijms20246117 ; PMID: 31817232
- 2-Hydroxymelatonin, Rather Than Melatonin, Is Responsible for RBOH-Dependent Reactive Oxygen Species Production Leading to Premature Senescence in Plants. DOI: 10.3390/antiox10111728 ; PMID: 34829600
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Gene Resources
- UniProt: A0A178VF11
- EMBL: CACRSJ010000106, LR881468, LUHQ01000003
- AlphaFoldDB: A0A178VF11
- EnsemblPlants: AT3G04060.1
- Gramene: AT3G04060.1
- KEGG: ath:AT3G04060
- Orthologous matrix: NFPYHSV
- ExpressionAtlas: AT3G04060
- InterPro: IPR003441, IPR036093
- PANTHER: PTHR31744, PTHR31744:SF73
- SUPFAM: SSF101941
- PROSITE: PS51005
- Gene3D: 2.170.150.80
- SWISS-MODEL: A0A178VF11
Homologs
- Brassica napus GSBRNA2T00097708001, GSBRNA2T00075630001
- Brassica oleracea XP_013585390.1, XP_013639829.1
- Brassica rapa XP_009130418.1, XP_009125013.1, XP_009125012.1
- Raphanus raphanistrum RrC10959_p1, RrC16390_p1
Sequences
cDNA Sequence
- >AT3G04060.1
CTCTATATAAAGACATTTTTTTTCTACCTTCACATACTTTTATTTTCATTTCCTTTAACTGCATAGTTCTTCCTCAAATTGCTCATACCTTTGCTTCTCTTTCTTTCTTTATTCAACCTCTTATTTCTTCTTCAGCACCAACGTGTATCTGCAGTAAACACATATCCATCGATCGATCTCCTCAAAAAGTTATTGTTTTCTTGAAGGATTTTTCTTGTTCTTGATCAAGCATACATATATATAGATGGTGGAAGAAGGCGGCGTAGTTGTGAATCAAGGAGGAGATCAGGAGGTGGTGGATTTGCCTCCGGGGTTTCGGTTTCACCCTACTGATGAAGAGATAATAACTCACTACCTCAAAGAGAAGGTCTTCAACATCCGATTTACCGCGGCAGCGATTGGTCAAGCCGACCTCAACAAGAACGAGCCATGGGATCTACCAAAGATTGCAAAGATGGGGGAGAAGGAGTTTTACTTTTTCTGCCAGAGGGATCGGAAGTATCCGACCGGGATGAGGACGAACCGTGCGACCGTGTCTGGTTATTGGAAGGCGACCGGGAAGGACAAGGAGATCTTTAGAGGCAAAGGTTGTCTTGTTGGGATGAAGAAAACACTTGTTTTCTATACAGGAAGAGCTCCTAAAGGTGAAAAGACCAATTGGGTTATGCATGAATATCGTCTTGATGGAAAATATTCTTATCATAACCTCCCCAAAACCGCAAGGGATGAATGGGTGGTGTGTAGGGTTTTTCACAAGAACGCTCCTAGTACTACAATCACTACTACAAAACAACTCTCAAGGATTGATTCTCTTGATAACATTGATCATCTCTTAGACTTCTCATCTCTCCCTCCTCTCATAGATCCGGGTTTCTTGGGTCAACCCGGCCCAAGCTTCTCCGGTGCCCGTCAACAACACGATCTCAAACCTGTTCTCCACCATCCTACAACCGCACCAGTCGACAACACTTACCTTCCTACCCAAGCTCTCAATTTCCCTTACCACTCGGTCCATAATTCCGGATCTGATTTCGGCTACGGGGCAGGTTCAGGCAATAATAACAAAGGTATGATCAAGTTGGAGCATTCTCTTGTGAGTGTGTCTCAAGAAACCGGTTTGAGTTCCGATGTGAACACAACCGCAACGCCAGAGATATCTTCTTATCCAATGATGATGAATCCGGCAATGATGGATGGTAGCAAGTCAGCGTGTGATGGTCTTGATGACTTGATCTTCTGGGAAGATTTATATACTAGCTAAATTTGGGAAAAGGTTATTTGTTAATTGTGATTGAAGAGTGGCATATTGATTACTCGTCTAGTGTTTTTAATCGTGTAATTAGTTCGTATATAATATACATGTACATAAGATCATTAGGTTTATTAGGCATTGGACTTTAGTTCGGTGATTGCTTACCTAGTTTTTAGCTTGAGAAAAAAGGCTGTCATTGGGGTTATGTTTCTTTGTGATTAACTTGTACATATATACATTTAAATTATTCGTATGGTTTATTTCGTTTAAATTA
CDS Sequence
- >AT3G04060.1
ATGGTGGAAGAAGGCGGCGTAGTTGTGAATCAAGGAGGAGATCAGGAGGTGGTGGATTTGCCTCCGGGGTTTCGGTTTCACCCTACTGATGAAGAGATAATAACTCACTACCTCAAAGAGAAGGTCTTCAACATCCGATTTACCGCGGCAGCGATTGGTCAAGCCGACCTCAACAAGAACGAGCCATGGGATCTACCAAAGATTGCAAAGATGGGGGAGAAGGAGTTTTACTTTTTCTGCCAGAGGGATCGGAAGTATCCGACCGGGATGAGGACGAACCGTGCGACCGTGTCTGGTTATTGGAAGGCGACCGGGAAGGACAAGGAGATCTTTAGAGGCAAAGGTTGTCTTGTTGGGATGAAGAAAACACTTGTTTTCTATACAGGAAGAGCTCCTAAAGGTGAAAAGACCAATTGGGTTATGCATGAATATCGTCTTGATGGAAAATATTCTTATCATAACCTCCCCAAAACCGCAAGGGATGAATGGGTGGTGTGTAGGGTTTTTCACAAGAACGCTCCTAGTACTACAATCACTACTACAAAACAACTCTCAAGGATTGATTCTCTTGATAACATTGATCATCTCTTAGACTTCTCATCTCTCCCTCCTCTCATAGATCCGGGTTTCTTGGGTCAACCCGGCCCAAGCTTCTCCGGTGCCCGTCAACAACACGATCTCAAACCTGTTCTCCACCATCCTACAACCGCACCAGTCGACAACACTTACCTTCCTACCCAAGCTCTCAATTTCCCTTACCACTCGGTCCATAATTCCGGATCTGATTTCGGCTACGGGGCAGGTTCAGGCAATAATAACAAAGGTATGATCAAGTTGGAGCATTCTCTTGTGAGTGTGTCTCAAGAAACCGGTTTGAGTTCCGATGTGAACACAACCGCAACGCCAGAGATATCTTCTTATCCAATGATGATGAATCCGGCAATGATGGATGGTAGCAAGTCAGCGTGTGATGGTCTTGATGACTTGATCTTCTGGGAAGATTTATATACTAGCTAA
Protein Sequence
- >AT3G04060.1
MVEEGGVVVNQGGDQEVVDLPPGFRFHPTDEEIITHYLKEKVFNIRFTAAAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRGKGCLVGMKKTLVFYTGRAPKGEKTNWVMHEYRLDGKYSYHNLPKTARDEWVVCRVFHKNAPSTTITTTKQLSRIDSLDNIDHLLDFSSLPPLIDPGFLGQPGPSFSGARQQHDLKPVLHHPTTAPVDNTYLPTQALNFPYHSVHNSGSDFGYGAGSGNNNKGMIKLEHSLVSVSQETGLSSDVNTTATPEISSYPMMMNPAMMDGSKSACDGLDDLIFWEDLYTS