Information report for AT2G45170
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
Literature and News
- Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. DOI: 10.1104/pp.011024 ; PMID: 12114572
- Transcriptome profiling of the response of Arabidopsis suspension culture cells to Suc starvation. DOI: 10.1104/pp.104.044362 ; PMID: 15310832
- Processing of ATG8s, ubiquitin-like proteins, and their deconjugation by ATG4s are essential for plant autophagy. DOI: 10.1105/tpc.104.025395 ; PMID: 15494556
- Visualization of autophagy in Arabidopsis using the fluorescent dye monodansylcadaverine and a GFP-AtATG8e fusion protein. DOI: 10.1111/j.1365-313X.2005.02396.x ; PMID: 15860017
- Autophagic nutrient recycling in Arabidopsis directed by the ATG8 and ATG12 conjugation pathways. DOI: 10.1104/pp.105.060673 ; PMID: 16040659
- Starvation-induced expression of autophagy-related genes in Arabidopsis. DOI: 10.1042/BC20040516 ; PMID: 16354162
- A high-performance, small-scale microarray for expression profiling of many samples in Arabidopsis-pathogen studies. DOI: 10.1111/j.1365-313X.2006.02972.x ; PMID: 17181774
- Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2006.02979.x ; PMID: 17217462
- Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. DOI: 10.1104/pp.107.115592 ; PMID: 18305208
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- An autophagy-associated Atg8 protein is involved in the responses of Arabidopsis seedlings to hormonal controls and abiotic stresses. DOI: 10.1093/jxb/ern244 ; PMID: 18836138
- Overexpression of Arabidopsis acyl-CoA binding protein ACBP3 promotes starvation-induced and age-dependent leaf senescence. DOI: 10.1105/tpc.110.075333 ; PMID: 20442372
- The deubiquitinating enzyme AMSH3 is required for intracellular trafficking and vacuole biogenesis in Arabidopsis thaliana. DOI: 10.1105/tpc.110.075952 ; PMID: 20543027
- The deubiquitinating enzyme AMSH1 and the ESCRT-III subunit VPS2.1 are required for autophagic degradation in Arabidopsis. DOI: 10.1105/tpc.113.113399 ; PMID: 23800962
- A BAR-domain protein SH3P2, which binds to phosphatidylinositol 3-phosphate and ATG8, regulates autophagosome formation in Arabidopsis. DOI: 10.1105/tpc.113.118307 ; PMID: 24249832
- TRAF Family Proteins Regulate Autophagy Dynamics by Modulating AUTOPHAGY PROTEIN6 Stability in Arabidopsis. DOI: 10.1105/tpc.17.00056 ; PMID: 28351989
- Overexpression of ATG8 in Arabidopsis Stimulates Autophagic Activity and Increases Nitrogen Remobilization Efficiency and Grain Filling. DOI: 10.1093/pcp/pcy214 ; PMID: 30407574
- Noncanonical ATG8-ABS3 interaction controls senescence in plants. DOI: 10.1038/s41477-018-0348-x ; PMID: 30664732
- Identification of transcription factors that regulate ATG8 expression and autophagy in Arabidopsis. DOI: 10.1080/15548627.2019.1598753 ; PMID: 30909785
- ATG8-Binding UIM Proteins Define a New Class of Autophagy Adaptors and Receptors. DOI: 10.1016/j.cell.2019.02.009 ; PMID: 30955882
- Interaction between VPS35 and RABG3f is necessary as a checkpoint to control fusion of late compartments with the vacuole. DOI: 10.1073/pnas.1905321116 ; PMID: 31570580
- COST1 regulates autophagy to control plant drought tolerance. DOI: 10.1073/pnas.1918539117 ; PMID: 32170020
- Phytopathogen Effectors Use Multiple Mechanisms to Manipulate Plant Autophagy. DOI: 10.1016/j.chom.2020.07.010 ; PMID: 32810441
- The Anaerobic Product Ethanol Promotes Autophagy-Dependent Submergence Tolerance in Arabidopsis. DOI: 10.3390/ijms21197361 ; PMID: 33028029
- C53 is a cross-kingdom conserved reticulophagy receptor that bridges the gap betweenselective autophagy and ribosome stalling at the endoplasmic reticulum. DOI: 10.1080/15548627.2020.1846304 ; PMID: 33164651
- A unique AtSar1D-AtRabD2a nexus modulates autophagosome biogenesis in Arabidopsis thaliana. DOI: 10.1073/pnas.2021293118 ; PMID: 33879613
- Two γ-zeins induce the unfolded protein response. DOI: 10.1093/plphys/kiab367 ; PMID: 34618077
- ROOT HAIR DEFECTIVE3 Is a Receptor for Selective Autophagy of the Endoplasmic Reticulum in Arabidopsis. DOI: 10.3389/fpls.2022.817251 ; PMID: 35283874
- Autophagy and its mediated mitochondrial quality control maintain pollen tube growth and male fertility in Arabidopsis. DOI: 10.1080/15548627.2022.2095838 ; PMID: 35786359
- Type one protein phosphatase regulates fixed-carbon starvation-induced autophagy in Arabidopsis. DOI: 10.1093/plcell/koac251 ; PMID: 35961047
- TraB family proteins are components of ER-mitochondrial contact sites and regulate ER-mitochondrial interactions and mitophagy. DOI: 10.1038/s41467-022-33402-w ; PMID: 36163196
- Arabidopsis ORP2A mediates ER-autophagosomal membrane contact sites and regulates PI3P in plant autophagy. DOI: 10.1073/pnas.2205314119 ; PMID: 36252028
- A distinct linker mediating ER-autophagosome membrane contact site (EACS) in plants. DOI: 10.1080/15548627.2023.2176028 ; PMID: 36730606
- The phosphatidylinositol 3-phosphate effector FYVE3 regulates FYVE2-dependent autophagy in Arabidopsis thaliana. DOI: 10.3389/fpls.2023.1160162 ; PMID: 37008475
Gene Resources
- UniProt: A0A178VZA0
- EMBL: CACRSJ010000105, CACSHJ010000088, LUHQ01000002
- AlphaFoldDB: A0A178VZA0
- EnsemblPlants: AT2G45170.1, AT2G45170.2
- Gramene: AT2G45170.1, AT2G45170.2
- KEGG: ath:AT2G45170
- Orthologous matrix: LPRQNFI
- ExpressionAtlas: AT2G45170
- InterPro: IPR004241, IPR029071
- PANTHER: PTHR10969
- SUPFAM: SSF54236
- Gene3D: 3.10.20.90
- OrthoDB: A0A178VZA0
- SWISS-MODEL: A0A178VZA0
- Conserved Domain Database: cd16128
Sequences
cDNA Sequence
- >AT2G45170.1
ATCCAATCATAGACGAAAAGAAAAAGGTTCCTTTTTTTGACTTTGTATCCGTAGATCATCTTCTTCTTCTTCTTCCAGAGTTTTATCCTTATCCGTTCCATCAAATTCTCTCTCTAAGCAAAGATGAATAAAGGAAGCATCTTTAAGATGGACAACGATTTCGAAAAGAGAAAAGCTGAAGCTGGAAGGATCAGGGAGAAATACCCTGATCGAATTCCTGTGATTGTGGAAAAGGCTGAGAAAAGTGAAGTCCCAAATATAGACAAGAAGAAGTACCTTGTGCCATCAGACCTAACAGTTGGTCAATTTGTGTATGTGATTCGGAAGAGAATCAAACTAAGTGCAGAGAAAGCTATCTTCATTTTCGTAGACAATGTTCTTCCTCCAACAGGAGAGCTAATGTCAAGCGTTTACGAGGATAAGAAAGACGAAGATGGCTTCCTTTACATCACTTACAGTGGCGAGAACACATTCGGTGCTTCTTCAATCTAATCTCTGACCTCTGAGAATCCGCCACGTTTTAATGCTTCTTCCCAACTTTCAATTTGTGTGTATAGTTTGTTCTCAATATTTATCATTTCTCAAATAATTGTGATTACTATCTTCTTTTCACTTGTTAAAATGTACATAGACTAATCTTATAATATTATCTTCCTTTGGTATTATAAGTTTGTGTGGCTTTCTTTCTCCCTCAAAGATTTCATTCATTAGACTGGTATCATTTGATGATGCTACTACATGAATTCTTTCTTGGATA - >AT2G45170.2
ATCCAATCATAGACGAAAAGAAAAAGGTTCCTTTTTTTGACTTTGTATCCGTAGATCATCTTCTTCTTCTTCTTCCAGAGTTTTATCCTTATCCGTTCCATCAAATTCTCTCTCTAAGCAAAGATGAATAAAGGAAGCATCTTTAAGATGGACAACGATTTCGAAAAGAGAAAAGCTGAAGCTGGAAGGATCAGGGAGAAATACCCTGATCGAATTCCTGTGATTGTGGAAAAGGCTGAGAAAAGTGAAGTCCCAAATATAGACAAGAAGAAGTACCTTGTGCCATCAGACCTAACAGTTGGTCAATTTGTGTATGTGATTCGGAAGAGAATCAAACTAAGTGCAGAGAAAGCTATCTTCATTTTCGTAGACAATGTTCTTCCTCCAACAGGAGAGCTAATGTCAAGCGTTTACGAGGATAAGAAAGACGAAGATGGCTTCCTTTACATCACTTACAGTGGCGAGAACACATTCGGTGCTTCTTCAATCTAATCTCTGACCTCTGAGAATCCGCCACGTTTTAATGCTTCTTCCCAACTTTCAATTTGTGTGTATAGTTTGTTCTCAATATTTATCATTTCTCAAATAATTGTGATTACTATCTTCTTTTCACTTGTTAAAATGTACATAGACTAATCTTATAATATTATCTTCCTTTGGTATTATAAGTTTGTGTGGCTTTCTTTCTCCCTCAAAGATTTCATTCATTAGACTGGTATCATTTGATGATGCTACTACATGAATTCTTTCTTGGATA
CDS Sequence
- >AT2G45170.1
ATGAATAAAGGAAGCATCTTTAAGATGGACAACGATTTCGAAAAGAGAAAAGCTGAAGCTGGAAGGATCAGGGAGAAATACCCTGATCGAATTCCTGTGATTGTGGAAAAGGCTGAGAAAAGTGAAGTCCCAAATATAGACAAGAAGAAGTACCTTGTGCCATCAGACCTAACAGTTGGTCAATTTGTGTATGTGATTCGGAAGAGAATCAAACTAAGTGCAGAGAAAGCTATCTTCATTTTCGTAGACAATGTTCTTCCTCCAACAGGAGAGCTAATGTCAAGCGTTTACGAGGATAAGAAAGACGAAGATGGCTTCCTTTACATCACTTACAGTGGCGAGAACACATTCGGTGCTTCTTCAATCTAA - >AT2G45170.2
ATGAATAAAGGAAGCATCTTTAAGATGGACAACGATTTCGAAAAGAGAAAAGCTGAAGCTGGAAGGATCAGGGAGAAATACCCTGATCGAATTCCTGTGATTGTGGAAAAGGCTGAGAAAAGTGAAGTCCCAAATATAGACAAGAAGAAGTACCTTGTGCCATCAGACCTAACAGTTGGTCAATTTGTGTATGTGATTCGGAAGAGAATCAAACTAAGTGCAGAGAAAGCTATCTTCATTTTCGTAGACAATGTTCTTCCTCCAACAGGAGAGCTAATGTCAAGCGTTTACGAGGATAAGAAAGACGAAGATGGCTTCCTTTACATCACTTACAGTGGCGAGAACACATTCGGTGCTTCTTCAATCTAA
Protein Sequence
- >AT2G45170.1
MNKGSIFKMDNDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFGASSI - >AT2G45170.2
MNKGSIFKMDNDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFGASSI