Gene Details:
- Gene ID: AT2G43990
- Gene Symbol: PKN1
- Gene Name: PIKMIN1
- Description: GPI-anchored adhesin-like protein;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
Germplasm Phenotype:
- pkn1-1 — Reduced root meristem size, normal root length
- pkn1-1 ccs52a1-2 — Partial supression of the root growth phenotype of ccs52a1-2.
Function-related keywords:
- shoot axis apex , root , plant embryo , sepal , flower , inflorescence flower pedicel , collective leaf structure
Literature:
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Plant lineage-specific PIKMIN1 drives APC/CCCS52A2 E3-ligase activity-dependent cell division. DOI: 10.1093/plphys/kiac528 ; PMID: 36423220
Sequences:
cDNA Sequence
- >AT2G43990.1
ACGAAATAAAAGTTGAGGGTTAAGTCGGTAATTAAAGAGAAAAAGACAAAAGCAAAAGCCTCTCCGTCAAAGTTTCGATCTTTTTCTCATTTTAATGTTTGTTGTTGTTCGTCTCTGCGCCTCCGCCAAAAAAAAAAAGTCGTTTTGAAATATCAGATCAAGCAGATCGGAAACAGTGAGAGAACACTGAGACACGAAGAAAGAGAGATACTTTAGGCTTTTTGGTCGAATGCTCATAGGATGAATCGAATAACTTCTTCTTCAAATGCGCAAACGAAGAAATTTCCTCAGTCTCAGCCACAGCCGCCGGAGAAAAATGAGAAAAAACTGAAAAGGGAGAGATTTCCGGTGAACCCTTTGAGAGATTTCAGTACAAGAAGCTCTGGAAGCAGCAGTTGTAGCAATGTGAGTGCTTCTGGTTCAACTTCCGGTGAAGCATCCAACGGTTGTCACAGGTTCTTGCTCTCTCATTCTTTCTCATCGTCTTCTTCATCATCTTCTTCTTCGTTGGGAGTTTTTCCTCGTAGACCAGTGAGATCAGTAGCTAAAAACCCCAAATCTGCTCCGGTAGTTAGTAAACCCTTAATTAGAAAGAAACCAAGCTCTCTTGAGGAGGTTAAGTTGAAATCTACTCTTACTGAGAAACCTAATTTGCTGAAGTCTCAGAGATGCAAGACAAATCCTGTATCTGGAAAGAGACCAACTTGTAAGATTACCATGAAACCGGAGAAAGTTTCGGTTTTGAAGAAACAATCTTCTGTTTCTAGAAATGTTAAGCTTAAAGATAGCCAAACTACGATTAGAGTAGATGACAGTATTGCTCAGAGTACTCCTGTTTCTAAATTAGAAACTGGATCTGATTTGATTTATAGAAGGAAGAGTGAAGCTACTGATGATGGTAGACTAAGTAGCAACAGTAGTAGTTATCAAGATAGGACACCACCTGTTCAAGCTTCGGTGTCTCCAGAGATACAGTGTGGATCGTCTATGAATCTGTCTGCATCAGCTCAATCACAAGCTTGTTATGCTGCTGGACATTTACTCTCAGGTGTTAGTGATAAGAGGAAATGCAAGCCTAAGGGGATACTCACTGTGGGTGAAAATGGTTTTGAGGTTGGTAAAGGCAAGATACTGAATGATTCTGATGAATTTGATGAAGGAGATTTTGGTAATGACGGGAGTTATGATGATATTTCTGTTATGCCTTTGCCTGCGGATGCGTCAGTGCACTGGCTTTTATCTCCTTGTGATGAGGAGAAAGAACATGAGAAGGAAATATCTGATGATGGTTTCTCTCAGTTTCAGCAAATTGTTGAGTGTGTTGGCCATGAGACTCCTTCGCCACTATCAGATCGTAGTGCTTCTTCGGATCTATGCAACATTAGTAGTGGTAGAAGTCTTTCGCCCATGGATATATATAAAGAGACAACGAGAAGGATCAGTTCTTCTCTTTCTCCAAATGAACTTTTTCGGTTCAGAAGATTCATTCACCTTTCATCATGTGATGGTGAAGCTTCAGCATTCGACACTTCCCCTACATGTGAGCTAGATCCTTCTGAGCATTTGAAAGGAGACAAATCGTCTCCCTTATCTGTTGATACGCTGGGAAGTGAGAATGTTATTCAAACACCTGAATCCAACTCAAGCTTCGACAATTATTTTGGACTCTCATGTTCTCAAGCTGAAATCCAAAAGAAACATGATGTTGGTTCAGATTTGGAATCACTGACAATGAAGTTTCAGTCAGCCGGTTTGTCACCAAGGATCCAGGCTTCATCATGGGAGCCGAGCCGTTCAAGTTTCAACTTCGACTATTTGGCCACATCTTCTGATTCTATTGATCTCTCACAGTTTCAGAGAGGTTTAGTTGACAGGAGTTCTTGTCATCCTCATGTAACACTGGATAAAGTGTCAAGGACACATTTGAGAGTAGAGCAAACAAATAGCCACATGCCTGAAATGAAATCCCAACAGATTACAGATACTGAATTTGATATTCAAAATCACAAAGAAAGTGCTGCTTCTCTGGGAAAAGGAAGAGAATTGCTTCCATGCTCTGCTGCAGAGTCAATAAGCACTGATGGAGGTGGTCTGATTTGTTCTGAGGATTCAAATTGGATGGCATGTTACAAGAATTAACTTCCTAGAAAGAATAGTTTTAGCTTCTGTTTCTTTGTAAGTAGGTCCACGTTAGCAAGATACCTAAAGAATTTTCCTTCTGTTATTGTGTTTTATCTCTTGTTGTCTCCACATTTCCACTGTAAACAGCATTTTTTTATGAGCGCATCAGAATATTTGAGATTCTTTAA
CDS Sequence
- >AT2G43990.1
ATGAATCGAATAACTTCTTCTTCAAATGCGCAAACGAAGAAATTTCCTCAGTCTCAGCCACAGCCGCCGGAGAAAAATGAGAAAAAACTGAAAAGGGAGAGATTTCCGGTGAACCCTTTGAGAGATTTCAGTACAAGAAGCTCTGGAAGCAGCAGTTGTAGCAATGTGAGTGCTTCTGGTTCAACTTCCGGTGAAGCATCCAACGGTTGTCACAGGTTCTTGCTCTCTCATTCTTTCTCATCGTCTTCTTCATCATCTTCTTCTTCGTTGGGAGTTTTTCCTCGTAGACCAGTGAGATCAGTAGCTAAAAACCCCAAATCTGCTCCGGTAGTTAGTAAACCCTTAATTAGAAAGAAACCAAGCTCTCTTGAGGAGGTTAAGTTGAAATCTACTCTTACTGAGAAACCTAATTTGCTGAAGTCTCAGAGATGCAAGACAAATCCTGTATCTGGAAAGAGACCAACTTGTAAGATTACCATGAAACCGGAGAAAGTTTCGGTTTTGAAGAAACAATCTTCTGTTTCTAGAAATGTTAAGCTTAAAGATAGCCAAACTACGATTAGAGTAGATGACAGTATTGCTCAGAGTACTCCTGTTTCTAAATTAGAAACTGGATCTGATTTGATTTATAGAAGGAAGAGTGAAGCTACTGATGATGGTAGACTAAGTAGCAACAGTAGTAGTTATCAAGATAGGACACCACCTGTTCAAGCTTCGGTGTCTCCAGAGATACAGTGTGGATCGTCTATGAATCTGTCTGCATCAGCTCAATCACAAGCTTGTTATGCTGCTGGACATTTACTCTCAGGTGTTAGTGATAAGAGGAAATGCAAGCCTAAGGGGATACTCACTGTGGGTGAAAATGGTTTTGAGGTTGGTAAAGGCAAGATACTGAATGATTCTGATGAATTTGATGAAGGAGATTTTGGTAATGACGGGAGTTATGATGATATTTCTGTTATGCCTTTGCCTGCGGATGCGTCAGTGCACTGGCTTTTATCTCCTTGTGATGAGGAGAAAGAACATGAGAAGGAAATATCTGATGATGGTTTCTCTCAGTTTCAGCAAATTGTTGAGTGTGTTGGCCATGAGACTCCTTCGCCACTATCAGATCGTAGTGCTTCTTCGGATCTATGCAACATTAGTAGTGGTAGAAGTCTTTCGCCCATGGATATATATAAAGAGACAACGAGAAGGATCAGTTCTTCTCTTTCTCCAAATGAACTTTTTCGGTTCAGAAGATTCATTCACCTTTCATCATGTGATGGTGAAGCTTCAGCATTCGACACTTCCCCTACATGTGAGCTAGATCCTTCTGAGCATTTGAAAGGAGACAAATCGTCTCCCTTATCTGTTGATACGCTGGGAAGTGAGAATGTTATTCAAACACCTGAATCCAACTCAAGCTTCGACAATTATTTTGGACTCTCATGTTCTCAAGCTGAAATCCAAAAGAAACATGATGTTGGTTCAGATTTGGAATCACTGACAATGAAGTTTCAGTCAGCCGGTTTGTCACCAAGGATCCAGGCTTCATCATGGGAGCCGAGCCGTTCAAGTTTCAACTTCGACTATTTGGCCACATCTTCTGATTCTATTGATCTCTCACAGTTTCAGAGAGGTTTAGTTGACAGGAGTTCTTGTCATCCTCATGTAACACTGGATAAAGTGTCAAGGACACATTTGAGAGTAGAGCAAACAAATAGCCACATGCCTGAAATGAAATCCCAACAGATTACAGATACTGAATTTGATATTCAAAATCACAAAGAAAGTGCTGCTTCTCTGGGAAAAGGAAGAGAATTGCTTCCATGCTCTGCTGCAGAGTCAATAAGCACTGATGGAGGTGGTCTGATTTGTTCTGAGGATTCAAATTGGATGGCATGTTACAAGAATTAA
Protein Sequence
- >AT2G43990.1
MNRITSSSNAQTKKFPQSQPQPPEKNEKKLKRERFPVNPLRDFSTRSSGSSSCSNVSASGSTSGEASNGCHRFLLSHSFSSSSSSSSSSLGVFPRRPVRSVAKNPKSAPVVSKPLIRKKPSSLEEVKLKSTLTEKPNLLKSQRCKTNPVSGKRPTCKITMKPEKVSVLKKQSSVSRNVKLKDSQTTIRVDDSIAQSTPVSKLETGSDLIYRRKSEATDDGRLSSNSSSYQDRTPPVQASVSPEIQCGSSMNLSASAQSQACYAAGHLLSGVSDKRKCKPKGILTVGENGFEVGKGKILNDSDEFDEGDFGNDGSYDDISVMPLPADASVHWLLSPCDEEKEHEKEISDDGFSQFQQIVECVGHETPSPLSDRSASSDLCNISSGRSLSPMDIYKETTRRISSSLSPNELFRFRRFIHLSSCDGEASAFDTSPTCELDPSEHLKGDKSSPLSVDTLGSENVIQTPESNSSFDNYFGLSCSQAEIQKKHDVGSDLESLTMKFQSAGLSPRIQASSWEPSRSSFNFDYLATSSDSIDLSQFQRGLVDRSSCHPHVTLDKVSRTHLRVEQTNSHMPEMKSQQITDTEFDIQNHKESAASLGKGRELLPCSAAESISTDGGGLICSEDSNWMACYKN