AT2G43810

Gene Details

Gene ID: AT2G43810
Gene Symbol: LSM6B
Gene Name: SM-like 6B
Description: Small nuclear ribonucleoprotein family protein;(source:Araport11)
TAIR Accession: locus:2043969
Genome: Araport11_genome_release
Species: Arabidopsis thaliana

Functional Descriptions

PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)

GO:0005730 — is active in — nucleolus
GO:0000932 — is active in — P-body
GO:0030490 — involved in — maturation of SSU-rRNA
GO:0005732 — part of — sno(s)RNA-containing ribonucleoprotein complex
GO:0003729 — enables — mRNA binding
GO:0000398 — involved in — mRNA splicing, via spliceosome
GO:0005688 — part of — U6 snRNP
GO:0046540 — part of — U4/U6 x U5 tri-snRNP complex
GO:0003723 — enables — RNA binding

Functional Keywords

Literature and News

Gene Resources

Homologs

Sequences

cDNA Sequence

>AT2G43810.1
GCTCTGTTCGGCTGCTTCATCGAGCGGAAGTCTCTAGCCAATTACCGTTTGTTCGTGGACTCGAGGTTCGTTGTTCTTAGATTTCCCAGACTCATCTGTTTCTGCAATCCATTTCAAAGTTTCTCTTTTTACTTAATCCAAGTCATTCGCGCATTTCCTAATTGGTCTGAGGTTTAGGGTTTTAGGGCACATAGTTTTGTTTGATTCGGGAGTAATCGTTGAGATGCTACGAGTTTGGTATTCAAGATGATTCCTTTTCTCAAGATATTGTGGTTTCTTAGCAAAGAAGATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAGACACCTGCTGATTTCTTGAAATCTATCCGTGGTAAACCAGTTGTTGTCAAGCTCAACTCTGGTGTTGATTATCGAGGCATTCTTACTTGTCTTGATGGATATATGAACATCGCAATGGAGCAAACCGAAGAGTATGTAAATGGCCAGCTGAAGAACACATATGGCGACGCTTTTGTCCGTGGCAACAATGTTCTTTACATCAGCACAACAAAGGGGACATTGTCAGATGGAGCATAGCTCTCTTTCATCACCATGAATGTTCATCTTCTTCTCTACCTCTGGCATATGACAAATGTAGGATTTGTAGCAACCAGAGTTTATCACCACTGCATGAATTCGACATGTCTTTTTCTTCCGCAACTCAGTTTGTGTCTAAATCATCTCCAAAATTCTGAGATATAGCTAGATTTTTATTTGTTATGAAATTTTTTTTAATCACTGTTGGTCTTTGGAGCCTAATTATCGTGTTTTGATGACGCAATCACTGCGTCACAATCTGATGTCATCTTAACAATCATTAATGTATTTTTTTTTTCTTTTCTCGTAATATTCTTAATTATTCTTCGACAGCAAAGGTTTAAAAACTCCTTATTTCAATCATTAATGTATTTATGATTTGATCGAATAACAATAATATAGCTTATTTTGTTCTA
>AT2G43810.3
GCTCTGTTCGGCTGCTTCATCGAGCGGAAGTCTCTAGCCAATTACCGTTTGTTCGTGGACTCGAGGTTCGTTGTTCTTAGATTTCCCAGACTCATCTGTTTCTGCAATCCATTTCAAAGTTTCTCTTTTTACTTAATCCAAGTCATTCGCGCATTTCCTAATTGGTCTGAGGTTTAGGGTTTTAGGGCACATAGTTTTGTTTGATTCGGGAGTAATCGTTGAGATGCTACGAGTTTGGTATTCAAGATGATTCCTTTTCTCAAGATATTGTGGTTTCTTAGCAAAGAAGATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAGACACCTGCTGATTTCTTGAAATCTATCCGTGGTAAACCAGTTGTTGTCAAGCTCAACTCTGGTGTTGATTATCGAGGCATTCTTACTTGTCTTGATGGATATATGAACATCGCAATGGAGCAAACCGAAGAGTATGTAAATGGCCAGCTGAAGAACACATATGGCGACGCTTTTGTCCGTGGCAACAATGTTCTTTACATCAGCACAACAAAGGGGACATTGTCAGATGGAGCATAGCTCTCTTTCATCACCATGAATGTTCATCTTCTTCTCTACCTCTGGCATATGACAAATGTAGGATTTGTAGCAACCAGAGTTTATCACCACTGCATGAATTCGACATGTCTTTTTCTTCCGCAACTCAGTTTGTGTCTAAATCATCTCCAAAATTCTGAGATATAGCTAGATTTTTATTTGTTATGAAATTTTTTTTAATCACTGTTGGTCTTTGGAGCCTAATTATCGTGTTTTGATGACGCAATCACTGCGTCACAATCTGATGTCATCTTAACAATCATTAATGTATTTTTTTTTTCTTTTCTCGTAATATTCTTAATTATTCTTCGACAGCAAAGGTTTAAAAACTCCTTATTTCAATCATTAATGTATTTATGATTTGATCGAATAACAATAATATAGCTTATTTTGTTCTA
>AT2G43810.2
GCTCTGTTCGGCTGCTTCATCGAGCGGAAGTCTCTAGCCAATTACCGTTTGTTCGTGGACTCGAGGTTCGTTGTTCTTAGATTTCCCAGACTCATCTGTTTCTGCAATCCATTTCAAAGTTTCTCTTTTTACTTAATCCAAGTCATTCGCGCATTTCCTAATTGGTCTGAGGTTTAGGGTTTTAGGGCACATAGTTTTGTTTGATTCGGGAGTAATCGTTGAGATGCTACGAGTTTGGTATTCAAGATGATTCCTTTTCTCAAGATATTGTGGTTTCTTAGCAAAGAAGATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAGACACCTGCTGATTTCTTGAAATCTATCCGTGGTAAACCAGTTGTTGTCAAGCTCAACTCTGGTGTTGATTATCGAGGCATTCTTACTTGTCTTGATGGATATATGAACATCGCAATGGAGCAAACCGAAGAGTATGTAAATGGCCAGCTGAAGAACACATATGGCGACGCTTTTGTCCGTGGCAACAATGTTCTTTACATCAGCACAACAAAGGGGACATTGTCAGATGGAGCATAGCTCTCTTTCATCACCATGAATGTTCATCTTCTTCTCTACCTCTGGCATATGACAAATGTAGGATTTGTAGCAACCAGAGTTTATCACCACTGCATGAATTCGACATGTCTTTTTCTTCCGCAACTCAGTTTGTGTCTAAATCATCTCCAAAATTCTGAGATATAGCTAGATTTTTATTTGTTATGAAATTTTTTTTAATCACTGTTGGTCTTTGGAGCCTAATTATCGTGTTTTGATGACGCAATCACTGCGTCACAATCTGATGTCATCTTAACAATCATTAATGTATTTTTTTTTTCTTTTCTCGTAATATTCTTAATTATTCTTCGACAGCAAAGGTTTAAAAACTCCTTATTTCAATCATTAATGTATTTATGATTTGATCGAATAACAATAATATAGCTTATTTTGTTCTA

CDS Sequence

>AT2G43810.1
ATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAGACACCTGCTGATTTCTTGAAATCTATCCGTGGTAAACCAGTTGTTGTCAAGCTCAACTCTGGTGTTGATTATCGAGGCATTCTTACTTGTCTTGATGGATATATGAACATCGCAATGGAGCAAACCGAAGAGTATGTAAATGGCCAGCTGAAGAACACATATGGCGACGCTTTTGTCCGTGGCAACAATGTTCTTTACATCAGCACAACAAAGGGGACATTGTCAGATGGAGCATAG
>AT2G43810.3
ATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAGACACCTGCTGATTTCTTGAAATCTATCCGTGGTAAACCAGTTGTTGTCAAGCTCAACTCTGGTGTTGATTATCGAGGCATTCTTACTTGTCTTGATGGATATATGAACATCGCAATGGAGCAAACCGAAGAGTATGTAAATGGCCAGCTGAAGAACACATATGGCGACGCTTTTGTCCGTGGCAACAATGTTCTTTACATCAGCACAACAAAGGGGACATTGTCAGATGGAGCATAG
>AT2G43810.2
ATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAGACACCTGCTGATTTCTTGAAATCTATCCGTGGTAAACCAGTTGTTGTCAAGCTCAACTCTGGTGTTGATTATCGAGGCATTCTTACTTGTCTTGATGGATATATGAACATCGCAATGGAGCAAACCGAAGAGTATGTAAATGGCCAGCTGAAGAACACATATGGCGACGCTTTTGTCCGTGGCAACAATGTTCTTTACATCAGCACAACAAAGGGGACATTGTCAGATGGAGCATAG

Protein Sequence

>AT2G43810.1
MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSDGA
>AT2G43810.3
MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSDGA
>AT2G43810.2
MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSDGA