Gene Details:
- Gene ID: AT2G43650
- Gene Symbol: EMB2777, EMB2796, THAL
- Gene Name: EMBRYO DEFECTIVE 2777, , Thallo
- Description: Sas10/U3 ribonucleoprotein (Utp) family protein;(source:Araport11)
- TAIR Accession: locus:2044014
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
Gene Ontology:
- GO:0006364 — acts upstream of or within — rRNA processing
- GO:0032040 — part of — small-subunit processome
- GO:0005730 — located in — nucleolus
- GO:0005730 — is active in — nucleolus
- GO:0005515 — enables — protein binding
- GO:0000462 — involved in — maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
- GO:0005634 — located in — nucleus
Function-related keywords:
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure
Literature:
- Combinatorial microarray analysis revealing arabidopsis genes implicated in cytokinin responses through the His->Asp Phosphorelay circuitry. DOI: 10.1093/pcp/pci033 ; PMID: 15695462
- Identifying essential genes in Arabidopsis thaliana. DOI: 10.1016/j.tplants.2008.06.003 ; PMID: 18684657
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Dual Role of a SAS10/C1D Family Protein in Ribosomal RNA Gene Expression and Processing Is Essential for Reproduction in Arabidopsis thaliana. DOI: 10.1371/journal.pgen.1006408 ; PMID: 27792779
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
Sequences:
cDNA Sequence
- >AT2G43650.1
TCTCGTTCTCTTTCTCTGAAACTCAGCTTCTTCTTCAGACACCATTGATATCCTCTAAATTGTTCCCCGTCGTAGAAACTTTAGGTAATCGTTGCCGTCGAGCTGATATTTGTGAAGGGGAAACCCTAATTCGATAAGGGATTGTAAAGTTGCACAAGTTTGCTTATCCCCAGAACCTGCTCTGCAACACAACAATGGGGAAAAAAGGAGGGACTTTGAAGAGAAGTAGCAAAAGCACAAAAACTCGCAAAGATATCGTCGAAGACCAATACGACGACGAGATTGACGCCTTTCATAAACAGAGGGATATAGTTCCCTTGGATGTTAATGATGATACTGATGAATCGGATGAAGATGATGTGCAACCTGTATTTGATTTACAGGGTGTGGATGATGAAAGTGAGGAGGATGAAGATACAGAAGACGAAGAGGAGGCCGAGAATGGACTTACTGCGAAAATGATTAGGCAGAAGAAATATCTGAGGGCAAAGTTTGGTGATGGTGACGATGAAATGGCTGATGATGATAAGGATAAAGAGGAAGACAAAAGGAGCACATGGGGCGGAAGAAGTGGCCTATACCATAGTGGTGATAATGTGGATTTTGATATCCTATCAAGTGATGATGAAGACATTAAAGCGGAAGAAGAAGAGGTCATACGACTACGGGCAGAACAACTTGGATCCATAACAGCAGCTGATGCTGGGTTAGACGATGATAGTGAAGAAGATAGCGACAGAGAATTAACCATGGAGGAAATTTCTGACAAAGGTAAGCAGGCTACAAAATCCATCACAGATAAGAAAGAGAAGGGTGATAAGGATACACATGTTGAAGAGATCAAGAAAGACATAAACTCTTTGTCAAAAGAAGAGCAAATGGATGTAGTATATAGTTCTGCTCCGGAAATAGTTGGTCTTTTGTCTGAGTTGAACGATGCAGTTGAAGAGCTTGAGAGTAAGATAAATCCTGTTATGAATAAGTTAAAGGAAGGAGAAATTTCGTTGAATGGTTTAGCAAGGTACCTGGAGGTTAAGCAGCTTCTGCTACTTACCTATTGCCAATCTATAACATTTTATCTTCTACTCAAGTCTGAAGGGCAGCCCATCCGTGATCATCCGGTCCTTGCCCGTCTTGTCGAGATCAAATCTTTATTAGATAAGATCAAAGAACTTGATGAAGAGCTTCCCCCTGGATTTGAAGAGTCCCTAGCAAGAAGTATTGCTAATGGAGCAGTGCAAAAGGTGGTTAAAGAAGATCAGCTCACTTCACCTGTTTCTGATTCAGTAGATAGAATCACACAAGACACAGCCAAGCCGATGAAAATTGACAACGCAAGAGAAGAAAAGAAGAAAAAAGGAGAGAAACGCAAGCACCAGAATGATCTGGTTGATGTGCAAAGTGAGGAGATGTTAAAACTTCGAGCAGCTCTAGAGGGAAAACTTAGAACCAATGGAGTCCTTGGTTCTACTGTTTCAAAGTCTGATAAAGCTCAAAAACGCCAGAAATTAGCTAATAGGAAGCTAGAGACATTCGATGATTATGTGGATGATGCAGACAATAGCACACATAATGTAACAGCTGATAAGCTCACCAAGCTTGTGTCCACCAAACGGAAGCCCAAGACTATTTCTGGAGATGATGATTTACCGCAAAGAGATGATATTGGAGAACGGCGTAGAAAGTTTGAGCTCAGAGTTTTGGCTGGAGCTGGTGTGAAGTCATCAGAGGGAGATGGCAGGAATAAAAATGGGGCATTTGCATCAGATGATGAGGATGATAACGATGGTGATAACAATGACATGGTTGATAATGATGGTGAATCAGAAGATGAATTTTACAAACAAGTGAAACAGAAACAACAAGCTAAACGAGCTGCCAAAGCAGAGATCTATTCAAGAAAACCTCATTTGATGCCGTCATCGCCAGAACACGTGGATGGAAAACGACACATTTCAAATCAGATGGTGAGTAACAGAGGATTGACCCGGCAACGCAACAGGGACCTCAAAAACCCGAGAAAGAAGTACCGGAAAAATTACGAGAAAAAAGTCACTAGACGCAAAGGACAGGTCAGAGATATCAGGAAACAAACGGGTCCATATGCAGGAGAAGCCCGAGGTATCAATCCCAACACAAGCCGGAGCATCCGAATGTAGAACTAACCTCCTCTTCCTATGTCTCTATTTGCATGCTTCGTTTTGCTCTTGTATTATCTTCTATTGTGGATCTCGTACTTTTCATTTTTCTCTTCTTCAAGACCAAGCAAATCATTGTTTAAATCTGTTGTCTTGCATTTGTATTTTTAAAAAGAGAAAAACTTGCTTTTAAACTTCAAGAAGGCAATTCAATATGCTAAAGCGTACGAAGTAGTTTATGATTGTTCAACCACGTTGATTTGATTTGATTTTAAGATTATTCTCCATGTCAATTAGAACTGTAGAAGTAGG
CDS Sequence
- >AT2G43650.1
ATGGGGAAAAAAGGAGGGACTTTGAAGAGAAGTAGCAAAAGCACAAAAACTCGCAAAGATATCGTCGAAGACCAATACGACGACGAGATTGACGCCTTTCATAAACAGAGGGATATAGTTCCCTTGGATGTTAATGATGATACTGATGAATCGGATGAAGATGATGTGCAACCTGTATTTGATTTACAGGGTGTGGATGATGAAAGTGAGGAGGATGAAGATACAGAAGACGAAGAGGAGGCCGAGAATGGACTTACTGCGAAAATGATTAGGCAGAAGAAATATCTGAGGGCAAAGTTTGGTGATGGTGACGATGAAATGGCTGATGATGATAAGGATAAAGAGGAAGACAAAAGGAGCACATGGGGCGGAAGAAGTGGCCTATACCATAGTGGTGATAATGTGGATTTTGATATCCTATCAAGTGATGATGAAGACATTAAAGCGGAAGAAGAAGAGGTCATACGACTACGGGCAGAACAACTTGGATCCATAACAGCAGCTGATGCTGGGTTAGACGATGATAGTGAAGAAGATAGCGACAGAGAATTAACCATGGAGGAAATTTCTGACAAAGGTAAGCAGGCTACAAAATCCATCACAGATAAGAAAGAGAAGGGTGATAAGGATACACATGTTGAAGAGATCAAGAAAGACATAAACTCTTTGTCAAAAGAAGAGCAAATGGATGTAGTATATAGTTCTGCTCCGGAAATAGTTGGTCTTTTGTCTGAGTTGAACGATGCAGTTGAAGAGCTTGAGAGTAAGATAAATCCTGTTATGAATAAGTTAAAGGAAGGAGAAATTTCGTTGAATGGTTTAGCAAGGTACCTGGAGGTTAAGCAGCTTCTGCTACTTACCTATTGCCAATCTATAACATTTTATCTTCTACTCAAGTCTGAAGGGCAGCCCATCCGTGATCATCCGGTCCTTGCCCGTCTTGTCGAGATCAAATCTTTATTAGATAAGATCAAAGAACTTGATGAAGAGCTTCCCCCTGGATTTGAAGAGTCCCTAGCAAGAAGTATTGCTAATGGAGCAGTGCAAAAGGTGGTTAAAGAAGATCAGCTCACTTCACCTGTTTCTGATTCAGTAGATAGAATCACACAAGACACAGCCAAGCCGATGAAAATTGACAACGCAAGAGAAGAAAAGAAGAAAAAAGGAGAGAAACGCAAGCACCAGAATGATCTGGTTGATGTGCAAAGTGAGGAGATGTTAAAACTTCGAGCAGCTCTAGAGGGAAAACTTAGAACCAATGGAGTCCTTGGTTCTACTGTTTCAAAGTCTGATAAAGCTCAAAAACGCCAGAAATTAGCTAATAGGAAGCTAGAGACATTCGATGATTATGTGGATGATGCAGACAATAGCACACATAATGTAACAGCTGATAAGCTCACCAAGCTTGTGTCCACCAAACGGAAGCCCAAGACTATTTCTGGAGATGATGATTTACCGCAAAGAGATGATATTGGAGAACGGCGTAGAAAGTTTGAGCTCAGAGTTTTGGCTGGAGCTGGTGTGAAGTCATCAGAGGGAGATGGCAGGAATAAAAATGGGGCATTTGCATCAGATGATGAGGATGATAACGATGGTGATAACAATGACATGGTTGATAATGATGGTGAATCAGAAGATGAATTTTACAAACAAGTGAAACAGAAACAACAAGCTAAACGAGCTGCCAAAGCAGAGATCTATTCAAGAAAACCTCATTTGATGCCGTCATCGCCAGAACACGTGGATGGAAAACGACACATTTCAAATCAGATGGTGAGTAACAGAGGATTGACCCGGCAACGCAACAGGGACCTCAAAAACCCGAGAAAGAAGTACCGGAAAAATTACGAGAAAAAAGTCACTAGACGCAAAGGACAGGTCAGAGATATCAGGAAACAAACGGGTCCATATGCAGGAGAAGCCCGAGGTATCAATCCCAACACAAGCCGGAGCATCCGAATGTAG
Protein Sequence
- >AT2G43650.1
MGKKGGTLKRSSKSTKTRKDIVEDQYDDEIDAFHKQRDIVPLDVNDDTDESDEDDVQPVFDLQGVDDESEEDEDTEDEEEAENGLTAKMIRQKKYLRAKFGDGDDEMADDDKDKEEDKRSTWGGRSGLYHSGDNVDFDILSSDDEDIKAEEEEVIRLRAEQLGSITAADAGLDDDSEEDSDRELTMEEISDKGKQATKSITDKKEKGDKDTHVEEIKKDINSLSKEEQMDVVYSSAPEIVGLLSELNDAVEELESKINPVMNKLKEGEISLNGLARYLEVKQLLLLTYCQSITFYLLLKSEGQPIRDHPVLARLVEIKSLLDKIKELDEELPPGFEESLARSIANGAVQKVVKEDQLTSPVSDSVDRITQDTAKPMKIDNAREEKKKKGEKRKHQNDLVDVQSEEMLKLRAALEGKLRTNGVLGSTVSKSDKAQKRQKLANRKLETFDDYVDDADNSTHNVTADKLTKLVSTKRKPKTISGDDDLPQRDDIGERRRKFELRVLAGAGVKSSEGDGRNKNGAFASDDEDDNDGDNNDMVDNDGESEDEFYKQVKQKQQAKRAAKAEIYSRKPHLMPSSPEHVDGKRHISNQMVSNRGLTRQRNRDLKNPRKKYRKNYEKKVTRRKGQVRDIRKQTGPYAGEARGINPNTSRSIRM