Information report for AT2G43140
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0010629 — acts upstream of or within — negative regulation of gene expression
- GO:0005634 — located in — nucleus
- GO:0071215 — acts upstream of or within — cellular response to abscisic acid stimulus
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0046983 — enables — protein dimerization activity
- SALK_123812C — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:no change,cold:no change,oxidative stress:no change,osmotic stress:no change,salt stress:decreased,ABA:no change,hypoxia:ND.
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
- The Arabidopsis basic/helix-loop-helix transcription factor family. DOI: 10.1105/tpc.013839 ; PMID: 12897250
- Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. DOI: 10.1105/tpc.151140 ; PMID: 14600211
- Genome-wide expression profiling of ARABIDOPSIS RESPONSE REGULATOR 7(ARR7) overexpression in cytokinin response. DOI: 10.1007/s00438-006-0177-x ; PMID: 17061125
- Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. DOI: 10.1016/j.diff.2010.02.003 ; PMID: 20219281
- An ABA down-regulated bHLH transcription repressor gene, bHLH129 regulates root elongation and ABA response when overexpressed in Arabidopsis. DOI: 10.1038/srep17587 ; PMID: 26625868
- The G-Box Transcriptional Regulatory Code in Arabidopsis. DOI: 10.1104/pp.17.01086 ; PMID: 28864470
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
Gene Resources
- UniProt: A0A384KJ01
- EMBL: LUHQ01000002
- AlphaFoldDB: A0A384KJ01
- EnsemblPlants: AT2G43140.1
- Gramene: AT2G43140.1
- ExpressionAtlas: AT2G43140
- InterPro: IPR011598, IPR036638, IPR045239
- PANTHER: PTHR16223, PTHR16223:SF177
- SUPFAM: SSF47459
- PROSITE: PS50888
- Gene3D: 4.10.280.10
- OrthoDB: A0A384KJ01
- SWISS-MODEL: A0A384KJ01
- Conserved Domain Database: cd11393
Homologs
- Brassica napus GSBRNA2T00075475001, GSBRNA2T00139091001, GSBRNA2T00002303001, GSBRNA2T00045077001
- Brassica oleracea XP_013626713.1, XP_013632282.1, XP_013635791.1, XP_013635790.1, XP_013635792.1
- Brassica rapa XP_009133575.1, XP_009142915.1, XP_009142172.1, XP_009142171.1, XP_009142170.1
- Raphanus raphanistrum RrC4222_p3
Sequences
cDNA Sequence
- >AT2G43140.1
TATAGTATTAATTAATAACTACTCAAAGTCTCTTTCTCTCAAACCCTCTCCTCAAGATTTTTTCCTAAGCATCAGATTAGCTTTTGTAGGGTTTTTCTTTTCCGGTTTCATGTACCCTCCTAATTCCTCTAAGTCCACCGCTCATGACGGCGGCGGCGATGCCGACACCAATCAATATGACTCAGCCGCTGGAGCTACCCGTGATTTCTCCTCTCTTGGCCCTCAAACCCACCATCATCCGCCACCGCAGCGGCAGCAGCAGCATCAGCAGAATCCCAACCTCGTCGGCCATTATTTACCGGGCGAGCCATCTTCCATCGGATTCGATTCCAACGCTTCTTCTTCGTCTTCTTTGTTCCGACACAGAAGCTCTCCGGCTGGATTCTACGACCAACATCTTCCCACTGATCCCAACGGTAACTTTTTCGTTTCTTTATTTTTCCAACTTTTTTTTCACCCCACCAAAGAGTTCTCCTCCTAATTAATTGGATTTAATTAGTGCTGAATCTAGTCGACATAATTTACATATTATACAATTATACACATATCAAGAATTTTTTTTTTAAGTGTTCAACTTTTTTTGCACATTAAAAAATTTGTTACAACATTTAATAAATATATGTTTCCTATAAGTTAGACAAATTTGGTATAGAAAAAAAAACAAAATTAAAATTCCATATTAGTATTCGAAAACATTTTAAAAAATGAATATGTTATTTTACATCGATAAAGTCGGCAAGTAAATTGGTGTAGCACGTAAGTTTTGACTTACTGTAATCTAAACCATGTAGTCTTGGTTTTGTTTCGATGACTTAAGTAATTTGTCTATAGGTTGGAATTTGTTTGGTTTCCCTCCATACGACTTTTGTTTTGTTTTAATTAAAGACCAATAAGTATCAACCACGTAATTGAAAACCTAATACACATGTAGTTCTCAAAATATATCTATTTGCTTTAGTCAATACTTAATCTATCTCTAGATCTTATACACACCTTTCTCTTTCAGCTTATGTCTGAAGAGATTAACCATGGTTGATCTTAGTCATATGTATACATGTGTACACACGTATATATACATGCATGAATAATCAAATACGTATTTCCAATAGTGGCAAGTTGTTTATTTTAATAATGCAATATAAAACACACACTTGCCAAAAGTATATGTTAAAAAACGAATCGTTACAAAAAGAAATAAAAGTATAGTCCACTTGGAAATAATATATCCATCCCACTTGCTCTTTTTCTTCTGACAAAGCAGCCATGATGGCCTACCCCTGCTGACATGGCTTGATCATGGTCACTATTTTGATTTTTGGATACGCCTACTTGTCATTATATATAATAAGCTTTATTACTATAGTGTTAGTTGCAAGTAATAATTTATATTATTTTTGTGCAATTTGATCTTCGGTTCATTGCATATGTCCGGTTCACATTCCCTGTAATCCATGTGCGAGCCCCAAGAAATTTTACCCCCTCTTGCATTATTATATACATACTACTTTGTATAGTATATGATAGTAATTGGAATTCGAATGGTGAATATTTCTAAGATTCTTTTTCAGGAATCCTTATTCTCTACCAAATTGGCGATAATTAAAATATATATAAGTAGAGAGACTAGAGACAAAGGAAGGGGTCCTCGAGTTTCGAAGACGACCCATTCTCTTCTTATTTTGTACTAAAGATTTTTAAAATCAAACTGGTTATTAAAATACTGAGATAACAAGTTATAAACCTACATTACATTCTTTCTTTCTCTTTCAATCTAAATTTGTTGATGGAAGAAGGAACAGGTTTTTCTCTAGGACGGCCAAACGGAGGCTACGGCGGAGGAGGAGAGCAAGGGCCGTCGAGGTTGAAGTCGGAGCTGAGATTCTCTAGTGGGAGTAGTAGCCATCAAGAACATAATTCTCTACCGCGAATCTCGGAGGTTGAAGCGGCTGCAGCGGCTAGAAACGGTGTCGCATCAAGTAGTATGAGTTTTGGAAATAATCGTACTAACAATTGGGACAACTCGTCTTCTCATATCAGTTTCACCATTGATCAACCCGGAAAACGGTCCAAGAACTCCGACTTTTTCACCTTAGAAACTCAGTATAGCATGCCGCAAACAACTCTGGAAATGGCGACAATGGAGAACTTGATGAACATCCCAGAGGACTCGGTGCCTTGTAGGGCTAGAGCCAAGCGCGGCTTCGCGACTCACCCACGCAGCATTGCTGAAAGGGAGAGAAGAACGAGGATAAGCGGGAAGCTGAAGAAGCTACAAGAACTTGTGCCTAATATGGACAAGCAAACGAGCTACGCAGATATGTTGGATTTGGCTGTTGAGCATATCAAAGGTCTTCAGCACCAAGTAGAGTCACTGGAAAAGGGAATGGAGAGATGTACTTGTGGGGCATGCAAGAAGCGATGATGAATGATATTGTTCCAAGTATGATGCAATAAAGTATAGAAGAAAAGGAGATCACTTACGAACCAAATTCTAAGACAGAAAGAAACATAGCAAAAAGGAGTTATTTTGGAGGTCTAAAGAAAGTGATGATGGATTAATGAAGGCTGGTTTTGTTACTCTCTGAAAGTCTTGACCTTTATTATAACTTAAAATTCGATCAATCGATTTTTTTTTTCCTGTTTTCCTCAAAGTTGGTTAATTTTAGCTTAGAGCAAAACCCATTATTTGAGATTGAAAGAGATGCGCGTTTGTGTGTGTGAATATAATCCTACGTTTTGAATTTTGATCTGTGAATAAAAATCTCAGAAAAACATCAGGAGGATCATAGTTGTTTTCAACAAATGTATATAAAATAAAACCTTAATTGAACCAAATTCATTATTTCAA - >AT2G43140.2
TATAGTATTAATTAATAACTACTCAAAGTCTCTTTCTCTCAAACCCTCTCCTCAAGATTTTTTCCTAAGCATCAGATTAGCTTTTGTAGGGTTTTTCTTTTCCGGTTTCATGTACCCTCCTAATTCCTCTAAGTCCACCGCTCATGACGGCGGCGGCGATGCCGACACCAATCAATATGACTCAGCCGCTGGAGCTACCCGTGATTTCTCCTCTCTTGGCCCTCAAACCCACCATCATCCGCCACCGCAGCGGCAGCAGCAGCATCAGCAGAATCCCAACCTCGTCGGCCATTATTTACCGGGCGAGCCATCTTCCATCGGATTCGATTCCAACGCTTCTTCTTCGTCTTCTTTGTTCCGACACAGAAGCTCTCCGGCTGGATTCTACGACCAACATCTTCCCACTGATCCCAACGGTAACTTTTTCGTTTCTTTATTTTTCCAACTTTTTTTTCACCCCACCAAAGAGTTCTCCTCCTAATTAATTGGATTTAATTAGTGCTGAATCTAGTCGACATAATTTACATATTATACAATTATACACATATCAAGAATTTTTTTTTTAAGTGTTCAACTTTTTTTGCACATTAAAAAATTTGTTACAACATTTAATAAATATATGTTTCCTATAAGTTAGACAAATTTGGTATAGAAAAAAAAACAAAATTAAAATTCCATATTAGTATTCGAAAACATTTTAAAAAATGAATATGTTATTTTACATCGATAAAGTCGGCAAGTAAATTGGTGTAGCACGTAAGTTTTGACTTACTGTAATCTAAACCATGTAGTCTTGGTTTTGTTTCGATGACTTAAGTAATTTGTCTATAGGTTGGAATTTGTTTGGTTTCCCTCCATACGACTTTTGTTTTGTTTTAATTAAAGACCAATAAGTATCAACCACGTAATTGAAAACCTAATACACATGTAGTTCTCAAAATATATCTATTTGCTTTAGTCAATACTTAATCTATCTCTAGATCTTATACACACCTTTCTCTTTCAGCTTATGTCTGAAGAGATTAACCATGGTTGATCTTAGTCATATGTATACATGTGTACACACGTATATATACATGCATGAATAATCAAATACGTATTTCCAATAGTGGCAAGTTGTTTATTTTAATAATGCAATATAAAACACACACTTGCCAAAAGTATATGTTAAAAAACGAATCGTTACAAAAAGAAATAAAAGTATAGTCCACTTGGAAATAATATATCCATCCCACTTGCTCTTTTTCTTCTGACAAAGCAGCCATGATGGCCTACCCCTGCTGACATGGCTTGATCATGGTCACTATTTTGATTTTTGGATACGCCTACTTGTCATTATATATAATAAGCTTTATTACTATAGTGTTAGTTGCAAGTAATAATTTATATTATTTTTGTGCAATTTGATCTTCGGTTCATTGCATATGTCCGGTTCACATTCCCTGTAATCCATGTGCGAGCCCCAAGAAATTTTACCCCCTCTTGCATTATTATATACATACTACTTTGTATAGTATATGATAGTAATTGGAATTCGAATGGTGAATATTTCTAAGATTCTTTTTCAGGAATCCTTATTCTCTACCAAATTGGCGATAATTAAAATATATATAAGTAGAGAGACTAGAGACAAAGGAAGGGGTCCTCGAGTTTCGAAGACGACCCATTCTCTTCTTATTTTGTACTAAAGATTTTTAAAATCAAACTGGTTATTAAAATACTGAGATAACAAGTTATAAACCTACATTACATTCTTTCTTTCTCTTTCAATCTAAATTTGTTGATGGAAGAAGGAACAGGTTTTTCTCTAGGACGGCCAAACGGAGGCTACGGCGGAGGAGGAGAGCAAGGGCCGTCGAGGTTGAAGTCGGAGCTGAGATTCTCTAGTGGGAGTAGTAGCCATCAAGAACATAATTCTCTACCGCGAATCTCGGAGGTTGAAGCGGCTGCAGCGGCTAGAAACGGTGTCGCATCAAGTAGTATGAGTTTTGGAAATAATCGTACTAACAATTGGGACAACTCGTCTTCTCATATCAGTTTCACCATTGATCAACCCGGAAAACGGTCCAAGAACTCCGACTTTTTCACCTTAGAAACTCAGTATAGCATGCCGCAAACAACTCTGGAAATGGCGACAATGGAGAACTTGATGAACATCCCAGAGGACTCGGTGCCTTGTAGGGCTAGAGCCAAGCGCGGCTTCGCGACTCACCCACGCAGCATTGCTGAAAGGGAGAGAAGAACGAGGATAAGCGGGAAGCTGAAGAAGCTACAAGAACTTGTGCCTAATATGGACAAGCAAACGAGCTACGCAGATATGTTGGATTTGGCTGTTGAGCATATCAAAGGTCTTCAGCACCAAGTAGAGTCACTGGAAAAGGGAATGGAGAGATGTACTTGTGGGGCATGCAAGAAGCGATGATGAATGATATTGTTCCAAGTATGATGCAATAAAGTATAGAAGAAAAGGAGATCACTTACGAACCAAATTCTAAGACAGAAAGAAACATAGCAAAAAGGAGTTATTTTGGAGGTCTAAAGAAAGTGATGATGGATTAATGAAGGCTGGTTTTGTTACTCTCTGAAAGTCTTGACCTTTATTATAACTTAAAATTCGATCAATCGATTTTTTTTTTCCTGTTTTCCTCAAAGTTGGTTAATTTTAGCTTAGAGCAAAACCCATTATTTGAGATTGAAAGAGATGCGCGTTTGTGTGTGTGAATATAATCCTACGTTTTGAATTTTGATCTGTGAATAAAAATCTCAGAAAAACATCAGGAGGATCATAGTTGTTTTCAACAAATGTATATAAAATAAAACCTTAATTGAACCAAATTCATTATTTCAA
CDS Sequence
- >AT2G43140.1
ATGGAAGAAGGAACAGGTTTTTCTCTAGGACGGCCAAACGGAGGCTACGGCGGAGGAGGAGAGCAAGGGCCGTCGAGGTTGAAGTCGGAGCTGAGATTCTCTAGTGGGAGTAGTAGCCATCAAGAACATAATTCTCTACCGCGAATCTCGGAGGTTGAAGCGGCTGCAGCGGCTAGAAACGGTGTCGCATCAAGTAGTATGAGTTTTGGAAATAATCGTACTAACAATTGGGACAACTCGTCTTCTCATATCAGTTTCACCATTGATCAACCCGGAAAACGGTCCAAGAACTCCGACTTTTTCACCTTAGAAACTCAGTATAGCATGCCGCAAACAACTCTGGAAATGGCGACAATGGAGAACTTGATGAACATCCCAGAGGACTCGGTGCCTTGTAGGGCTAGAGCCAAGCGCGGCTTCGCGACTCACCCACGCAGCATTGCTGAAAGGGAGAGAAGAACGAGGATAAGCGGGAAGCTGAAGAAGCTACAAGAACTTGTGCCTAATATGGACAAGCAAACGAGCTACGCAGATATGTTGGATTTGGCTGTTGAGCATATCAAAGGTCTTCAGCACCAAGTAGAGTCACTGGAAAAGGGAATGGAGAGATGTACTTGTGGGGCATGCAAGAAGCGATGA - >AT2G43140.2
ATGGAAGAAGGAACAGGTTTTTCTCTAGGACGGCCAAACGGAGGCTACGGCGGAGGAGGAGAGCAAGGGCCGTCGAGGTTGAAGTCGGAGCTGAGATTCTCTAGTGGGAGTAGTAGCCATCAAGAACATAATTCTCTACCGCGAATCTCGGAGGTTGAAGCGGCTGCAGCGGCTAGAAACGGTGTCGCATCAAGTAGTATGAGTTTTGGAAATAATCGTACTAACAATTGGGACAACTCGTCTTCTCATATCAGTTTCACCATTGATCAACCCGGAAAACGGTCCAAGAACTCCGACTTTTTCACCTTAGAAACTCAGTATAGCATGCCGCAAACAACTCTGGAAATGGCGACAATGGAGAACTTGATGAACATCCCAGAGGACTCGGTGCCTTGTAGGGCTAGAGCCAAGCGCGGCTTCGCGACTCACCCACGCAGCATTGCTGAAAGGGAGAGAAGAACGAGGATAAGCGGGAAGCTGAAGAAGCTACAAGAACTTGTGCCTAATATGGACAAGCAAACGAGCTACGCAGATATGTTGGATTTGGCTGTTGAGCATATCAAAGGTCTTCAGCACCAAGTAGAGTCACTGGAAAAGGGAATGGAGAGATGTACTTGTGGGGCATGCAAGAAGCGATGA
Protein Sequence
- >AT2G43140.1
MEEGTGFSLGRPNGGYGGGGEQGPSRLKSELRFSSGSSSHQEHNSLPRISEVEAAAAARNGVASSSMSFGNNRTNNWDNSSSHISFTIDQPGKRSKNSDFFTLETQYSMPQTTLEMATMENLMNIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVESLEKGMERCTCGACKKR - >AT2G43140.2
MEEGTGFSLGRPNGGYGGGGEQGPSRLKSELRFSSGSSSHQEHNSLPRISEVEAAAAARNGVASSSMSFGNNRTNNWDNSSSHISFTIDQPGKRSKNSDFFTLETQYSMPQTTLEMATMENLMNIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVESLEKGMERCTCGACKKR