Information report for AT2G43100
Gene Details
|
|
Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- GO:0019761 — involved in — glucosinolate biosynthetic process
- GO:0003861 — enables — 3-isopropylmalate dehydratase activity
- GO:0009507 — located in — chloroplast
- GO:0009098 — involved in — leucine biosynthetic process
- GO:0009536 — located in — plastid
- GO:0009570 — located in — chloroplast stroma
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , vascular leaf , stamen , sepal , flower , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure
Literature and News
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Dissection of floral induction pathways using global expression analysis. DOI: 10.1242/dev.00842 ; PMID: 14573523
- Retrograde plastid redox signals in the expression of nuclear genes for chloroplast proteins of Arabidopsis thaliana. DOI: 10.1074/jbc.M406358200 ; PMID: 15561727
- A spatial dissection of the Arabidopsis floral transcriptome by MPSS. DOI: 10.1186/1471-2229-8-43 ; PMID: 18426585
- The impact of the absence of aliphatic glucosinolates on insect herbivory in Arabidopsis. DOI: 10.1371/journal.pone.0002068 ; PMID: 18446225
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Omics-based approaches to methionine side chain elongation in Arabidopsis: characterization of the genes encoding methylthioalkylmalate isomerase and methylthioalkylmalate dehydrogenase. DOI: 10.1093/pcp/pcp079 ; PMID: 19493961
- Functional specification of Arabidopsis isopropylmalate isomerases in glucosinolate and leucine biosynthesis. DOI: 10.1093/pcp/pcq113 ; PMID: 20663849
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- Metabolic and transcriptomic changes induced in Arabidopsis by the rhizobacterium Pseudomonas fluorescens SS101. DOI: 10.1104/pp.112.207324 ; PMID: 23073694
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- as Well as Plastid Type-Specific Expression Define the Roles of Distinct Small Subunits of Isopropylmalate Isomerase. DOI: 10.3389/fpls.2020.00808 ; PMID: 32612621
- The plastidic bile acid transporter 5 is required for the biosynthesis of methionine-derived glucosinolates in Arabidopsis thaliana. DOI: 10.1105/tpc.109.066399 ; PMID: 19542295
Gene Resources
- UniProt: A0A178VZE1
- EMBL: CACRSJ010000105, CACSHJ010000088, LUHQ01000002
- AlphaFoldDB: A0A178VZE1
- EnsemblPlants: AT2G43100.1
- Gramene: AT2G43100.1
- KEGG: ath:AT2G43100
- Orthologous matrix: FAYARMM
- ExpressionAtlas: AT2G43100
- InterPro: IPR000573, IPR015928, IPR033940
- PANTHER: PTHR43345, PTHR43345:SF7
- SUPFAM: SSF52016
- Gene3D: 3.20.19.10
- OrthoDB: A0A178VZE1
- SWISS-MODEL: A0A178VZE1
- Conserved Domain Database: cd01577
Sequences
cDNA Sequence
- >AT2G43100.1
CGTGAACTCTCTCACTCACTCAACAAAGTAAAGAAACAATGGCGTATTCTCTTCCTACATTTCCCCAAGCCTTACCTTGCTCGTCAACCAAAACTTCTTCCTCCTTGGCTACCTTCCGATCTCCTTTCTTAAGATTCAATGGTTCCACTTCCTTAATCCCCTCCTCTATCTCCATCACTTCACGTGGCACATCCTCCCCGACCATCATCCCACGTGCTGCCGCCTCAGAATCCGACTCTAACGAAGCCCTAGCCAACACAACCTTCCACGGCCTCTGCTATGTCTTGAAAGACAACATAGACACCGACCAGATCATCCCAGCAGGAGCCGCTTGCACCTTCCCATCGAACCAGCAAGAGCGTGATGAGATCGCCGCTCACGCTCTCTCTGGTCTACCAGACTTCCACAAAACACGGTTCATTGAGCCAGGAGAGAACAGATCAAAGTACTCAATCATAATCGGCGGCGAAAACTTTGGTTGCGGATCGTCACGTGAACATGCTCCGGTCTGTCTTGGAGCAGCTGGAGCTAAAGCCATAGTTGCTGAGTCTTACGCAAGAATCTTTTTCCGTAACTCGGTTGCTACAGGAGAGGTGTTTCCGCTCGAGTCAGAGGTTAGAGTCTGTGAGGAGTGTAAGACAGGAGATACGGTGACGATCGAGCTGAGTGATAGTGGTGGTTTATTGACTAATCACACGACCGGTAAAAACTATAAGCTGAAGTCGATCGGTGATGCTGGACCGGTTATTGATGCTGGTGGTATTTTTGCTTATGCGAGGATGATGGGAATGATTCCATCATTAGCTTAATCCTCTTCCATAACCATGATGGTGTTCTTGTATGCATAACTATTTGATGAATATTTGTGTTTTAGAGTTTTCTATTTTCTTAACTTTTTTATGTTTGTTTGATTTGGTATTGTTGTTGTTACCTAAAGAATAAGAAATCAAAAGCAAAATAGACCGACATGTTCCAAGATATGTGAATATGGTGAGTGTTTACTAAATTATGCGAATATTGTTGTTGCAACCTTATTTTCTTCCAAGTTGGGCATCAATTTCCCTTTTTGGGCTTAGTCTTCTTTTGTTTGTAAATTTAGTTTGTTTTAGTTTATTGTTGGCCCATTTCTGTAGGGTTTGGCCCGTTAAGTAAGTACCATGTAAACCCAGAAAATTTACAACGAAAACCCTTTAGCAAA
CDS Sequence
- >AT2G43100.1
ATGGCGTATTCTCTTCCTACATTTCCCCAAGCCTTACCTTGCTCGTCAACCAAAACTTCTTCCTCCTTGGCTACCTTCCGATCTCCTTTCTTAAGATTCAATGGTTCCACTTCCTTAATCCCCTCCTCTATCTCCATCACTTCACGTGGCACATCCTCCCCGACCATCATCCCACGTGCTGCCGCCTCAGAATCCGACTCTAACGAAGCCCTAGCCAACACAACCTTCCACGGCCTCTGCTATGTCTTGAAAGACAACATAGACACCGACCAGATCATCCCAGCAGGAGCCGCTTGCACCTTCCCATCGAACCAGCAAGAGCGTGATGAGATCGCCGCTCACGCTCTCTCTGGTCTACCAGACTTCCACAAAACACGGTTCATTGAGCCAGGAGAGAACAGATCAAAGTACTCAATCATAATCGGCGGCGAAAACTTTGGTTGCGGATCGTCACGTGAACATGCTCCGGTCTGTCTTGGAGCAGCTGGAGCTAAAGCCATAGTTGCTGAGTCTTACGCAAGAATCTTTTTCCGTAACTCGGTTGCTACAGGAGAGGTGTTTCCGCTCGAGTCAGAGGTTAGAGTCTGTGAGGAGTGTAAGACAGGAGATACGGTGACGATCGAGCTGAGTGATAGTGGTGGTTTATTGACTAATCACACGACCGGTAAAAACTATAAGCTGAAGTCGATCGGTGATGCTGGACCGGTTATTGATGCTGGTGGTATTTTTGCTTATGCGAGGATGATGGGAATGATTCCATCATTAGCTTAA
Protein Sequence
- >AT2G43100.1
MAYSLPTFPQALPCSSTKTSSSLATFRSPFLRFNGSTSLIPSSISITSRGTSSPTIIPRAAASESDSNEALANTTFHGLCYVLKDNIDTDQIIPAGAACTFPSNQQERDEIAAHALSGLPDFHKTRFIEPGENRSKYSIIIGGENFGCGSSREHAPVCLGAAGAKAIVAESYARIFFRNSVATGEVFPLESEVRVCEECKTGDTVTIELSDSGGLLTNHTTGKNYKLKSIGDAGPVIDAGGIFAYARMMGMIPSLA