Gene Details:
- Gene ID: AT2G43080
- Gene Symbol: AT-P4H-1
- Gene Name: P4H isoform 1
- Description: P4H isoform 1;(source:Araport11)
- TAIR Accession: locus:2041001
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Gene Ontology:
- GO:0004656 — enables — procollagen-proline 4-dioxygenase activity
- GO:0005506 — enables — iron ion binding
- GO:0005576 — located in — extracellular region
- GO:0005794 — located in — Golgi apparatus
- GO:0005783 — is active in — endoplasmic reticulum
- GO:0000137 — located in — Golgi cis cisterna
- GO:0031418 — enables — L-ascorbic acid binding
Function-related keywords:
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , pollen tube cell , pollen
Literature:
- Cloning and characterization of a low molecular weight prolyl 4-hydroxylase from Arabidopsis thaliana. Effective hydroxylation of proline-rich, collagen-like, and hypoxia-inducible transcription factor alpha-like peptides. DOI: 10.1074/jbc.M201865200 ; PMID: 11976332
- Automated identification of putative methyltransferases from genomic open reading frames. DOI: 10.1074/mcp.M300037-MCP200 ; PMID: 12872006
- Characterization of a second Arabidopsis thaliana prolyl 4-hydroxylase with distinct substrate specificity. DOI: 10.1074/jbc.M411109200 ; PMID: 15528200
- Response diversity of Arabidopsis thaliana ecotypes in elevated [CO2] in the field. DOI: 10.1007/s11103-006-9041-y ; PMID: 16941220
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Prolyl-4-hydroxylase (AtP4H1) mediates and mimics low oxygen response in Arabidopsis thaliana. DOI: 10.1007/s10142-009-0118-y ; PMID: 19277739
- Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. DOI: 10.1105/tpc.19.00081 ; PMID: 31266899
- Cloning and characterization of a low molecular weight prolyl 4-hydroxylase from Arabidopsis thaliana. Effective hydroxylation of proline-rich, collagen-like, and hypoxia-inducible transcription factor alpha-like peptides. DOI: 10.1074/jbc.M201865200 ; PMID: 11976332
- Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. DOI: 10.1105/tpc.19.00081 ; PMID: 31266899
Sequences:
cDNA Sequence
- >AT2G43080.2
GGAAAGAAGAAAGAAAAAGGCCTTTGTTTTTTTAAAGAGAAGAGAAGATCTCTGAGAAGAAACTCCTCTGACGTTTTTTCTCCACCCAAATCTCTCTCAACTCTCAAGCTCCTCTCTTTTTCTTCCTTCTGCAACAACAACAACTGTTACTGATCTCTCTCTCTCTCTCCCAAGTTTTTATTTTATTTTGATCGGAGATCGAGATCAGCTAGACATGGCTCCTGCCATGAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCGGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACGGAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATCTACGAGATGTCTCCCGGTGGGCAAATGACAAAGATGCAGAATTGTTACGGATTGGCAATGTCAAGCCTGAAGTAGTCAGTTGGTCCCCTCGAATTATTGTGCTTCATGACTTTCTCAGTCCGGAGGAATGTGAATACCTAAAAGCAATCGCCCGGCCTCGCCTTCAAGTTTCCACTGTTGTTGATGTAAAAACCGGAAAGGGAGTTAAAAGTGACGTGAGGACAAGCTCCGGAATGTTTCTAACTCATGTAGAAAGAAGTTATCCAATAATACAGGCAATTGAAAAGCGAATTGCAGTCTTTTCTCAAGTACCAGCGGAAAATGGAGAACTTATTCAAGTTCTAAGTGCAGATATGAGCCGCAGCAGTTTTACAAACCACATCACGATTACTTTGCTGACACTTTCAATCTAAAGCGTGGTGGTCAGCGCGTAGCAACTATGCTTATGTATCTAACTGATGACGTCGAAGGAGGAGAAACTTATTTCCCTTTGGCTGGTGATGGTGATTGCACCTGTGGTGGCAAAATCATGAAAGGCATCTCTGTTAAACCCACCAAAGGAGACGCAGTTCTCTTCTGGAGCATGGGACTCGACGGACAGTCAGATCCTAGGAGCATACATGGAGGATGTGAAGTTCTGTCTGGAGAAAAGTGGTCTGCTACTAAATGGATGAGGCAAAAAGCTACTTCTTGAAGAACTACTTAAAACTTTTTAAAACAAAAAGAAACCACAGGGACTTATATTGAAAAATGTCATAGTATCTCAGAGTTTTGATTTACTCTCTTTTTGACCCTTCAATTTTAGAATTTATCATTTACATACGTAAATCAATATGAATGTGTTTTACATTTTAACCTCTCCAACAAATTCTAAATTACTGTTAGCATATAACTGACACAGAAAACAATTACTGTTACAAA - >AT2G43080.1
GGAAAGAAGAAAGAAAAAGGCCTTTGTTTTTTTAAAGAGAAGAGAAGATCTCTGAGAAGAAACTCCTCTGACGTTTTTTCTCCACCCAAATCTCTCTCAACTCTCAAGCTCCTCTCTTTTTCTTCCTTCTGCAACAACAACAACTGTTACTGATCTCTCTCTCTCTCTCCCAAGTTTTTATTTTATTTTGATCGGAGATCGAGATCAGCTAGACATGGCTCCTGCCATGAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCGGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACGGAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATCTACGAGATGTCTCCCGGTGGGCAAATGACAAAGATGCAGAATTGTTACGGATTGGCAATGTCAAGCCTGAAGTAGTCAGTTGGTCCCCTCGAATTATTGTGCTTCATGACTTTCTCAGTCCGGAGGAATGTGAATACCTAAAAGCAATCGCCCGGCCTCGCCTTCAAGTTTCCACTGTTGTTGATGTAAAAACCGGAAAGGGAGTTAAAAGTGACGTGAGGACAAGCTCCGGAATGTTTCTAACTCATGTAGAAAGAAGTTATCCAATAATACAGGCAATTGAAAAGCGAATTGCAGTCTTTTCTCAAGTACCAGCGGAAAATGGAGAACTTATTCAAGTTCTAAGTGCAGATATGAGCCGCAGCAGTTTTACAAACCACATCACGATTACTTTGCTGACACTTTCAATCTAAAGCGTGGTGGTCAGCGCGTAGCAACTATGCTTATGTATCTAACTGATGACGTCGAAGGAGGAGAAACTTATTTCCCTTTGGCTGGTGATGGTGATTGCACCTGTGGTGGCAAAATCATGAAAGGCATCTCTGTTAAACCCACCAAAGGAGACGCAGTTCTCTTCTGGAGCATGGGACTCGACGGACAGTCAGATCCTAGGAGCATACATGGAGGATGTGAAGTTCTGTCTGGAGAAAAGTGGTCTGCTACTAAATGGATGAGGCAAAAAGCTACTTCTTGAAGAACTACTTAAAACTTTTTAAAACAAAAAGAAACCACAGGGACTTATATTGAAAAATGTCATAGTATCTCAGAGTTTTGATTTACTCTCTTTTTGACCCTTCAATTTTAGAATTTATCATTTACATACGTAAATCAATATGAATGTGTTTTACATTTTAACCTCTCCAACAAATTCTAAATTACTGTTAGCATATAACTGACACAGAAAACAATTACTGTTACAAA
CDS Sequence
- >AT2G43080.2
ATGGCTCCTGCCATGAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCGGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACGGAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATCTACGAGATGTCTCCCGGTGGGCAAATGACAAAGATGCAGAATTGTTACGGATTGGCAATGTCAAGCCTGAAGTAGTCAGTTGGTCCCCTCGAATTATTGTGCTTCATGACTTTCTCAGTCCGGAGGAATGTGAATACCTAAAAGCAATCGCCCGGCCTCGCCTTCAAGTTTCCACTGTTGTTGATGTAAAAACCGGAAAGGGAGTTAAAAGTGACGTGAGGACAAGCTCCGGAATGTTTCTAACTCATGTAGAAAGAAGTTATCCAATAATACAGGCAATTGAAAAGCGAATTGCAGTCTTTTCTCAAGTACCAGCGGAAAATGGAGAACTTATTCAAGTTCTAAGTGCAGATATGAGCCGCAGCAGTTTTACAAACCACATCACGATTACTTTGCTGACACTTTCAATCTAA - >AT2G43080.1
ATGGCTCCTGCCATGAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCGGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACGGAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATCTACGAGATGTCTCCCGGTGGGCAAATGACAAAGATGCAGAATTGTTACGGATTGGCAATGTCAAGCCTGAAGTAGTCAGTTGGTCCCCTCGAATTATTGTGCTTCATGACTTTCTCAGTCCGGAGGAATGTGAATACCTAAAAGCAATCGCCCGGCCTCGCCTTCAAGTTTCCACTGTTGTTGATGTAAAAACCGGAAAGGGAGTTAAAAGTGACGTGAGGACAAGCTCCGGAATGTTTCTAACTCATGTAGAAAGAAGTTATCCAATAATACAGGCAATTGAAAAGCGAATTGCAGTCTTTTCTCAAGTACCAGCGGAAAATGGAGAACTTATTCAAGTTCTAAGTGCAGATATGAGCCGCAGCAGTTTTACAAACCACATCACGATTACTTTGCTGACACTTTCAATCTAA
Protein Sequence
- >AT2G43080.2
MAPAMKIVFGLLTFVTVGMVIGSLLQLAFINRLEDSYGTGFPSLRGLRGQNTRYLRDVSRWANDKDAELLRIGNVKPEVVSWSPRIIVLHDFLSPEECEYLKAIARPRLQVSTVVDVKTGKGVKSDVRTSSGMFLTHVERSYPIIQAIEKRIAVFSQVPAENGELIQVLSADMSRSSFTNHITITLLTLSI - >AT2G43080.1
MAPAMKIVFGLLTFVTVGMVIGSLLQLAFINRLEDSYGTGFPSLRGLRGQNTRYLRDVSRWANDKDAELLRIGNVKPEVVSWSPRIIVLHDFLSPEECEYLKAIARPRLQVSTVVDVKTGKGVKSDVRTSSGMFLTHVERSYPIIQAIEKRIAVFSQVPAENGELIQVLSADMSRSSFTNHITITLLTLSI