Information report for AT2G43050
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0005576 — located in — extracellular region
- GO:0042545 — involved in — cell wall modification
- GO:0048316 — acts upstream of or within — seed development
- GO:0045490 — involved in — pectin catabolic process
- GO:0048589 — acts upstream of or within — developmental growth
- GO:0030599 — enables — pectinesterase activity
- GO:0046910 — enables — pectinesterase inhibitor activity
- GO:0071554 — acts upstream of or within — cell wall organization or biogenesis
- GO:0030154 — acts upstream of or within — cell differentiation
Literature and News
- Characterization of the pectin methylesterase-like gene AtPME3: a new member of a gene family comprising at least 12 genes in Arabidopsis thaliana. DOI: 10.1016/s0378-1119(98)00431-4 ; PMID: 9767082
- Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis. DOI: 10.1101/gad.969702 ; PMID: 12023303
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Quantitative trait loci associated with adventitious shoot formation in tissue culture and the program of shoot development in Arabidopsis. DOI: 10.1534/genetics.103.025213 ; PMID: 15342526
- CINNAMYL ALCOHOL DEHYDROGENASE-C and -D are the primary genes involved in lignin biosynthesis in the floral stem of Arabidopsis. DOI: 10.1105/tpc.105.030767 ; PMID: 15937231
- Delayed embryo development in the ARABIDOPSIS TREHALOSE-6-PHOSPHATE SYNTHASE 1 mutant is associated with altered cell wall structure, decreased cell division and starch accumulation. DOI: 10.1111/j.1365-313X.2006.02662.x ; PMID: 16553896
- Comprehensive expression profiling of the pectin methylesterase gene family during silique development in Arabidopsis thaliana. DOI: 10.1007/s00425-006-0261-9 ; PMID: 16622707
- Overexpression of pectin methylesterase inhibitors in Arabidopsis restricts fungal infection by Botrytis cinerea. DOI: 10.1104/pp.106.090803 ; PMID: 17277091
- Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. DOI: 10.1105/tpc.106.047688 ; PMID: 17337630
- HIGHLY METHYL ESTERIFIED SEEDS is a pectin methyl esterase involved in embryo development. DOI: 10.1104/pp.114.255604 ; PMID: 25572606
- The Plant Invertase/Pectin Methylesterase Inhibitor Superfamily. DOI: 10.3389/fpls.2022.863892 ; PMID: 35401607
- Comprehensive expression profiling of the pectin methylesterase gene family during silique development in Arabidopsis thaliana. DOI: 10.1007/s00425-006-0261-9 ; PMID: 16622707
Gene Resources
- UniProt: A0A178VVR7
- EMBL: CACRSJ010000105, CACSHJ010000088, LUHQ01000002
- AlphaFoldDB: A0A178VVR7
- EnsemblPlants: AT2G43050.1
- Gramene: AT2G43050.1
- KEGG: ath:AT2G43050
- Orthologous matrix: LYNIEEA
- ExpressionAtlas: AT2G43050
- InterPro: IPR000070, IPR006501, IPR011050
- PANTHER: PTHR31707
- SUPFAM: SSF101148, SSF51126
- PROSITE: PS00503
- Gene3D: 1.20.140.40, 2.160.20.10
- OrthoDB: A0A178VVR7
- SWISS-MODEL: A0A178VVR7
- Conserved Domain Database: cd15799
Homologs
- Actinidia chinensis CEY00_Acc31166
- Capsicum annuum T459_03324
- Cucumis melo MELO3C006208
- Cucumis sativus CsGy3G009820
- Gossypium hirsutum Gohir.D11G084500, Gohir.A11G079800
- Manihot esculenta MANES_05G047700, MANES_17G081100
- Nicotiana attenuata A4A49_41442
- Populus trichocarpa POPTR_002G145500v3
- Rosa chinensis RchiOBHm_Chr4g0409791
- Vitis vinifera VIT_06s0009g02560, VIT_06s0009g02630, VIT_15s0048g00510, VIT_06s0009g02590
Sequences
cDNA Sequence
- >AT2G43050.1
TCGTTTCTTAGTAAGAAATTAATTAACATCGACACAAATCAAAAATAGTAACGAACATAAAAATGTAACTATATATACATGTATCCTTAAGCTGCTGCTACTACAACAACTCGCTAATCATTAAGTTTCATAACTATAATGGCTTCATCATCATCAATATCAAATCACAAGATTCCAAACACACTAATGTTTTTGGTGATCGTAAACTTTTTGTACCTAATTCAAACTAATTCAGCTGTCAGTATCAGTTCCAATTCCAACTCCCACTTCTCAAGATTCTCGAGACATCGAAGCTCACCATCATCAAAAACCAAACAAGGGTTTCTTGCAACGGTCCAAGAGAGTATGAACCATGCTCTCTTGGCTCGTTCTCTTGCTTTCAACCTCACTCTTTCTCATCGAACCGTACAAACCCACACGTTCGATCCCATCCACGACTGCCTCGAGCTGCTCGACGACACACTTGACATGTTATCTCGCATCCATGCGGATAATGATGAAGAAGATGTCCATACATGGCTAAGCGCAGCACTCACGAACCAAGACACTTGTGAGCAGAGCCTTCAAGAAAAATCCGAGTCATACAAACACGGACTTGCGATGGATTTCGTCGCAAGAAACCTAACCGGTTTGTTGACTAGCTCGCTTGACTTGTTCGTATCCGTCAAGTCAAAACACCGGAAACTCTTATCGAAACAAGAGTATTTTCCGACGTTCGTTCCTTCGTCGGAGCAACGGAGGCTTCTAGAAGCTCCGGTGGAGGAGCTGAATGTTGATGCGGTGGTGGCTCCTGACGGAAGTGGGACACACAAAACCATAGGAGAAGCCTTGTTGTCTACGTCATTAGCGAGTAGTGGGGGCAGGACCAAAATATACCTAAAAGCCGGGACATATCATGAGAACATCAACATTCCGACGAAGCAGAAGAACGTTATGTTAGTTGGTGACGGGAAGGGTAAAACAGTCATTGTAGGTAGCAGAAGTAACAGAGGCGGCTGGACTACTTACAAAACTGCAACCGTCGCCGCTATGGGGGAAGGGTTCATAGCGCGGGACATGACATTCGTGAACAACGCCGGACCCAAATCGGAGCAAGCGGTGGCGCTCCGTGTCGGAGCAGATAAATCCGTCGTGCATCGATGCTCAGTGGAAGGATACCAAGATTCACTCTACACACACTCCAAACGACAATTCTATAGAGAGACGGATATCACCGGCACCGTCGATTTCATATTCGGAAACTCCGCCGTCGTATTTCAATCCTGCAACATCGCCGCACGGAAACCTTTACCGGGTCAGAGAAACTTCGTGACGGCGCAAGGACGGAGCAATCCGGGTCAAAACACCGGAATCGCGATTCAAAACTGCAGGATCACGGCGGAATCGATGACTTATCTTGGTCGGCCGTGGAAGGAGTATTCGAGGACGGTGGTGATGCAATCATTTATCGGCGGGTCGATTCATCCGTCGGGTTGGTCTCCTTGGTCGGGTGGTTTCGGTCTCAAATCTCTGTTTTACGGAGAATATGGGAATTCGGGTCCTGGATCATCGGTTTCGGGTCGGGTTAAATGGAGTGGGTGTCATCCGTCTTTGACGGTGACGGAAGCGGAAAAATTCACTGTGGCGAGTTTTATTGACGGGAATATATGGTTGCCGTCAACGGGCGTTAGTTTCGACCCAGGACTTGTGAATTGAGCTTTGTAATTAAAGCTCCTTTGATAAATAAATTCTTATATAGTTATTTATGTTGTGATTAAAGTAAGTAATGGTGTGGTATAATCTCTTTTCTTTTTTTATTATTTGTATATTTGGGTGTAACTAAAGAAAAAAAAAAAACAGTAAGTCCTCGAATAAAATCTGAATTTGTTGTAAGAATGGTTTGTATGTTTTACTAGATTTTAACCCGTGATATATAGCGGGGCTATACCTTTTTAAAAAAATAAAAATTAATTTGTTTAGTAGAT
CDS Sequence
- >AT2G43050.1
ATGGCTTCATCATCATCAATATCAAATCACAAGATTCCAAACACACTAATGTTTTTGGTGATCGTAAACTTTTTGTACCTAATTCAAACTAATTCAGCTGTCAGTATCAGTTCCAATTCCAACTCCCACTTCTCAAGATTCTCGAGACATCGAAGCTCACCATCATCAAAAACCAAACAAGGGTTTCTTGCAACGGTCCAAGAGAGTATGAACCATGCTCTCTTGGCTCGTTCTCTTGCTTTCAACCTCACTCTTTCTCATCGAACCGTACAAACCCACACGTTCGATCCCATCCACGACTGCCTCGAGCTGCTCGACGACACACTTGACATGTTATCTCGCATCCATGCGGATAATGATGAAGAAGATGTCCATACATGGCTAAGCGCAGCACTCACGAACCAAGACACTTGTGAGCAGAGCCTTCAAGAAAAATCCGAGTCATACAAACACGGACTTGCGATGGATTTCGTCGCAAGAAACCTAACCGGTTTGTTGACTAGCTCGCTTGACTTGTTCGTATCCGTCAAGTCAAAACACCGGAAACTCTTATCGAAACAAGAGTATTTTCCGACGTTCGTTCCTTCGTCGGAGCAACGGAGGCTTCTAGAAGCTCCGGTGGAGGAGCTGAATGTTGATGCGGTGGTGGCTCCTGACGGAAGTGGGACACACAAAACCATAGGAGAAGCCTTGTTGTCTACGTCATTAGCGAGTAGTGGGGGCAGGACCAAAATATACCTAAAAGCCGGGACATATCATGAGAACATCAACATTCCGACGAAGCAGAAGAACGTTATGTTAGTTGGTGACGGGAAGGGTAAAACAGTCATTGTAGGTAGCAGAAGTAACAGAGGCGGCTGGACTACTTACAAAACTGCAACCGTCGCCGCTATGGGGGAAGGGTTCATAGCGCGGGACATGACATTCGTGAACAACGCCGGACCCAAATCGGAGCAAGCGGTGGCGCTCCGTGTCGGAGCAGATAAATCCGTCGTGCATCGATGCTCAGTGGAAGGATACCAAGATTCACTCTACACACACTCCAAACGACAATTCTATAGAGAGACGGATATCACCGGCACCGTCGATTTCATATTCGGAAACTCCGCCGTCGTATTTCAATCCTGCAACATCGCCGCACGGAAACCTTTACCGGGTCAGAGAAACTTCGTGACGGCGCAAGGACGGAGCAATCCGGGTCAAAACACCGGAATCGCGATTCAAAACTGCAGGATCACGGCGGAATCGATGACTTATCTTGGTCGGCCGTGGAAGGAGTATTCGAGGACGGTGGTGATGCAATCATTTATCGGCGGGTCGATTCATCCGTCGGGTTGGTCTCCTTGGTCGGGTGGTTTCGGTCTCAAATCTCTGTTTTACGGAGAATATGGGAATTCGGGTCCTGGATCATCGGTTTCGGGTCGGGTTAAATGGAGTGGGTGTCATCCGTCTTTGACGGTGACGGAAGCGGAAAAATTCACTGTGGCGAGTTTTATTGACGGGAATATATGGTTGCCGTCAACGGGCGTTAGTTTCGACCCAGGACTTGTGAATTGA
Protein Sequence
- >AT2G43050.1
MASSSSISNHKIPNTLMFLVIVNFLYLIQTNSAVSISSNSNSHFSRFSRHRSSPSSKTKQGFLATVQESMNHALLARSLAFNLTLSHRTVQTHTFDPIHDCLELLDDTLDMLSRIHADNDEEDVHTWLSAALTNQDTCEQSLQEKSESYKHGLAMDFVARNLTGLLTSSLDLFVSVKSKHRKLLSKQEYFPTFVPSSEQRRLLEAPVEELNVDAVVAPDGSGTHKTIGEALLSTSLASSGGRTKIYLKAGTYHENINIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYKTATVAAMGEGFIARDMTFVNNAGPKSEQAVALRVGADKSVVHRCSVEGYQDSLYTHSKRQFYRETDITGTVDFIFGNSAVVFQSCNIAARKPLPGQRNFVTAQGRSNPGQNTGIAIQNCRITAESMTYLGRPWKEYSRTVVMQSFIGGSIHPSGWSPWSGGFGLKSLFYGEYGNSGPGSSVSGRVKWSGCHPSLTVTEAEKFTVASFIDGNIWLPSTGVSFDPGLVN