Information report for AT2G42940
Gene Details
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Functional Descriptions
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- GO:0010208 — involved in — pollen wall assembly
- GO:0010208 — acts upstream of or within — pollen wall assembly
- GO:0005515 — enables — protein binding
- GO:0031490 — enables — chromatin DNA binding
- GO:0010228 — involved in — vegetative to reproductive phase transition of meristem
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0005634 — located in — nucleus
- GO:0010228 — acts upstream of or within — vegetative to reproductive phase transition of meristem
- GO:0005634 — is active in — nucleus
- GO:0003680 — enables — minor groove of adenine-thymine-rich DNA binding
- GO:0040029 — acts upstream of or within — epigenetic regulation of gene expression
Functional Keywords
Literature and News
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Upregulation of an Arabidopsis RING-H2 gene, XERICO, confers drought tolerance through increased abscisic acid biosynthesis. DOI: 10.1111/j.1365-313X.2006.02782.x ; PMID: 16792696
- Global expression profiling applied to the analysis of Arabidopsis stamen development. DOI: 10.1104/pp.107.104422 ; PMID: 17905860
- A spatial dissection of the Arabidopsis floral transcriptome by MPSS. DOI: 10.1186/1471-2229-8-43 ; PMID: 18426585
- A matrix protein silences transposons and repeats through interaction with retinoblastoma-associated proteins. DOI: 10.1016/j.cub.2013.01.030 ; PMID: 23394836
- Flowering and genome integrity control by a nuclear matrix protein in Arabidopsis. DOI: 10.4161/nucl.25612 ; PMID: 23836195
- Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. DOI: 10.1073/pnas.1219277110 ; PMID: 24218605
- The tapetal AHL family protein TEK determines nexine formation in the pollen wall. DOI: 10.1038/ncomms4855 ; PMID: 24804694
- The AT-hook/PPC domain protein TEK negatively regulates floral repressors including MAF4 and MAF5. DOI: 10.4161/psb.25006 ; PMID: 23733063
- Arabidopsis AT-hook protein TEK positively regulates the expression of arabinogalactan proteins in controlling nexine layer formation in the pollen wall. DOI: 10.1093/mp/ssu114 ; PMID: 25336567
- DYT1 directly regulates the expression of TDF1 for tapetum development and pollen wall formation in Arabidopsis. DOI: 10.1111/tpj.12694 ; PMID: 25284309
- Arabidopsis AT-hook protein TEK positively regulates the expression of arabinogalactan proteins for Nexine formation. DOI: 10.1016/j.molp.2014.10.001 ; PMID: 25616387
- Grafting triggers differential responses between scion and rootstock. DOI: 10.1371/journal.pone.0124438 ; PMID: 25874958
- The temporal regulation of TEK contributes to pollen wall exine patterning. DOI: 10.1371/journal.pgen.1008807 ; PMID: 32407354
Gene Resources
- UniProt: A0A178VQG3
- EMBL: CACRSJ010000105, CACSHJ010000088, LR881467
- AlphaFoldDB: A0A178VQG3
- EnsemblPlants: AT2G42940.1
- Gramene: AT2G42940.1
- KEGG: ath:AT2G42940
- Orthologous matrix: GCDICET
- ExpressionAtlas: AT2G42940
- InterPro: IPR005175, IPR014476
- PANTHER: PTHR31100, PTHR31100:SF48
- SUPFAM: SSF117856
- PROSITE: PS51742
- Gene3D: 3.30.1330.80
- OrthoDB: A0A178VQG3
- SWISS-MODEL: A0A178VQG3
- Conserved Domain Database: cd11378
Homologs
- Brachypodium distachyon BRADI_3g11600v3
- Brassica napus GSBRNA2T00075489001, GSBRNA2T00139105001
- Daucus carota DCAR_006873
- Gossypium hirsutum Gohir.A07G145400, Gohir.D07G151600
- Manihot esculenta MANES_05G044200, MANES_01G265000
- Musa acuminata Ma01_g03590, Ma02_g05050
- Nicotiana attenuata A4A49_18941
- Populus trichocarpa POPTR_014G070800v3, POPTR_002G149300v3
- Sesamum indicum SIN_1013970
- Setaria viridis SEVIR_4G025200v2
- Solanum tuberosum PGSC0003DMG400003920
- Vitis vinifera VIT_15s0048g00780
- Zea mays GRMZM2G105498, GRMZM2G035077
Sequences
cDNA Sequence
- >AT2G42940.1
GCAAAATAAATTTGTTAACTATTAATCACAATTTTTGGTGACAACTTAACCATCTCCTACTCCTCACAATCATTCTTTTGGTGTCTCTACCATTTAATAATTCACCAAAATCTCCTTACTTAAACTCACAAACTCCTCACAAATTTTCTGAATCTTTCAGTTGAACATATAACAACATTCATAACAATGGCTGGAGGTACAGCTCTAACTCCAACCTCTGTAGGATCCAAGTCTGTTCCAATGAGGAACCATGAAGCAACAGAGAGAGGCAACACCAACAACAACCTGAGAGCATTACCCAAAGCCGTCCAACCGGTTTCATCAATCGAAGGAGAGATGGCTAAGAGGCCACGTGGCAGACCCGCTGGCTCCAAGAACAAACCCAAACCACCAATCATTGTGACTCACGACAGTCCAAATTCCCTCAGAGCTAACGCCGTTGAGATCAGCTCAGGTTGTGACATCTGTGAGACTTTATCGGATTTTGCAAGAAGGAAACAGAGAGGTCTCTGCATTCTCAGTGCCAATGGTTGTGTCACCAATGTGACATTAAGGCAACCAGCTTCATCAGGAGCAATTGTCACATTACACGGACGTTACGAGATCCTCTCATTGCTTGGATCAATCTTGCCTCCACCAGCACCACTTGGAATAACTGGTCTGACCATTTACTTAGCCGGACCTCAAGGACAGGTTGTTGGTGGAGGAGTGGTTGGTGGGCTAATCGCATCTGGTCCTGTTGTTCTCATGGCTGCATCTTTCATGAATGCTGTTTTTGATCGTCTTCCTATGGATGATGATGAAGCTGCCTCTATGCAGAACCAGCAGTACTACCAGAATGGAAGATCCCGTCCTTTAGATGACATTCATGGACTGCCTCAAAATCTGCTCACTAATGGAAACTCGGCTTCTGATATCTACTCTTGGGGGCCTGCGCAGCGTGTCATGTCGAAACCTTAATACTACTGCTCTAATCTCCACGTTTCATCATATCAAATGCCTTAATCTTATTATCTCATTTACCTTGGAATCAAAGATAAATGTGTCTGTAGGTTGAGAGAGAACCGTAAGTCTGGTTAAGAAACTGAAGCTTATCTCCCTTTGTAGTTTGTACCTGCAACAGTAAAAAGAAAAAACTGAAAAAAGCAAAAGTAAATGATTATGAATTTTAAGCACAATCCTCTAATTTAATACGAAAATATT
CDS Sequence
- >AT2G42940.1
ATGGCTGGAGGTACAGCTCTAACTCCAACCTCTGTAGGATCCAAGTCTGTTCCAATGAGGAACCATGAAGCAACAGAGAGAGGCAACACCAACAACAACCTGAGAGCATTACCCAAAGCCGTCCAACCGGTTTCATCAATCGAAGGAGAGATGGCTAAGAGGCCACGTGGCAGACCCGCTGGCTCCAAGAACAAACCCAAACCACCAATCATTGTGACTCACGACAGTCCAAATTCCCTCAGAGCTAACGCCGTTGAGATCAGCTCAGGTTGTGACATCTGTGAGACTTTATCGGATTTTGCAAGAAGGAAACAGAGAGGTCTCTGCATTCTCAGTGCCAATGGTTGTGTCACCAATGTGACATTAAGGCAACCAGCTTCATCAGGAGCAATTGTCACATTACACGGACGTTACGAGATCCTCTCATTGCTTGGATCAATCTTGCCTCCACCAGCACCACTTGGAATAACTGGTCTGACCATTTACTTAGCCGGACCTCAAGGACAGGTTGTTGGTGGAGGAGTGGTTGGTGGGCTAATCGCATCTGGTCCTGTTGTTCTCATGGCTGCATCTTTCATGAATGCTGTTTTTGATCGTCTTCCTATGGATGATGATGAAGCTGCCTCTATGCAGAACCAGCAGTACTACCAGAATGGAAGATCCCGTCCTTTAGATGACATTCATGGACTGCCTCAAAATCTGCTCACTAATGGAAACTCGGCTTCTGATATCTACTCTTGGGGGCCTGCGCAGCGTGTCATGTCGAAACCTTAA
Protein Sequence
- >AT2G42940.1
MAGGTALTPTSVGSKSVPMRNHEATERGNTNNNLRALPKAVQPVSSIEGEMAKRPRGRPAGSKNKPKPPIIVTHDSPNSLRANAVEISSGCDICETLSDFARRKQRGLCILSANGCVTNVTLRQPASSGAIVTLHGRYEILSLLGSILPPPAPLGITGLTIYLAGPQGQVVGGGVVGGLIASGPVVLMAASFMNAVFDRLPMDDDEAASMQNQQYYQNGRSRPLDDIHGLPQNLLTNGNSASDIYSWGPAQRVMSKP