Gene Details:

  • Gene ID: AT2G42830
  • Gene Symbol: AGL5, SHP2
  • Gene Name: AGAMOUS-like 5, SHATTERPROOF 2
  • Description: K-box region and MADS-box transcription factor family protein;(source:Araport11)
  • TAIR Accession: locus:2052420
  • Genome: Araport11_genome_release
  • Species: Arabidopsis thaliana

Transcripts:

Plant Ontology Annotations:

  • PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
  • PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
  • PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
  • PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
  • PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
  • PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
  • PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
  • PO:0000084  — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)

Gene Ontology:

  • GO:0000978  — enables — RNA polymerase II cis-regulatory region sequence-specific DNA binding
  • GO:0003700  — enables — DNA-binding transcription factor activity
  • GO:0048481  — acts upstream of or within — plant ovule development
  • GO:0005515  — enables — protein binding
  • GO:0048440  — acts upstream of or within — carpel development
  • GO:0045944  — involved in — positive regulation of transcription by RNA polymerase II
  • GO:0000981  — enables — DNA-binding transcription factor activity, RNA polymerase II-specific
  • GO:0005634  — located in — nucleus
  • GO:0000976  — enables — transcription cis-regulatory region binding
  • GO:0006357  — involved in — regulation of transcription by RNA polymerase II
  • GO:0046983  — enables — protein dimerization activity

Germplasm Phenotype:

  • CS3843  — double mutant; produces indehiscent siliques, in which valve margin cells expand at a faster rate after fertilization than valve cells; lignification in valve margin cell is reduced, especially at the fruit base; valve margins are less constricted, resulting in the absence of dehiscence zones in mature siliques.
  • CS3844  — double mutant; produces indehiscent siliques, in which valve margin cells expand at a faster rate after fertilization than valve cells; lignification in valve margin cell is reduced, especially at the fruit base; valve margins are less constricted, resulting in the absence of dehiscence zones in mature siliques.
  • CS3845  — siliques from shp2-1 single mutant are dehiscent as wt; double shp1-1 shp2-1 mutant produces indehiscent siliques, in which valve margin cells expand at a faster rate after fertilization than valve cells; lignification in valve margin cell is reduced, especially at the fruit base; valve margins are less constricted, resulting in the absence of dehiscence zones in mature siliques
  • CS3846  — siliques from shp2-1 single mutant are dehiscent as wt; double shp1-1 shp2-1 mutant produces indehiscent siliques, in which valve margin cells expand at a faster rate after fertilization than valve cells; lignification in valve margin cell is reduced, especially at the fruit base; valve margins are less constricted, resulting in the absence of dehiscence zones in mature siliques

Literature:

Sequences:

cDNA Sequence
  • >AT2G42830.1
    AAATGTTAGAAGTAATGGTCCATGTTCTTTCTTTCTTTTTCCTTCTATAACACTTCAGTTTGAAAAAAAACTACCAAACCTTCTGTTTTCTGCAAATGGGTTTTTAAATACTTCCAAAGAAATATTCCTCTAAAAGAAATTATAAACCAAAACAGAAACCAAAAACAAAAAATAAAGTTGAAGCAGCAGTTAAGTGGTACTGAGATAATAAGAATAGTATCTTTAGGCCAATGAACAAATTAACTCTCTCATAATTCATCTTCCCATCCTCACTTCTCTTTCTTTCTGATCATAATTAATCTTGCTAAGCCAGCTAGGGCTTATAGAAATGGAGGGTGGTGCGAGTAATGAAGTAGCAGAGAGCAGCAAGAAGATAGGGAGAGGGAAGATAGAGATAAAGAGGATAGAGAACACTACGAATCGTCAAGTCACTTTCTGCAAACGACGCAATGGTTTACTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGACGCTGAGGTTGCTCTTGTCATCTTCTCCACTCGAGGCCGTCTCTACGAGTACGCCAACAACAGTGTGAGAGGAACAATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGACCATCACCGAAGCTAATACTCAGTACTATCAGCAAGAGGCGTCTAAACTCCGGAGACAGATTCGGGACATTCAGAATTTGAACAGACACATTCTTGGTGAATCTCTTGGTTCCTTGAACTTTAAGGAACTCAAGAACCTTGAAAGTAGGCTTGAGAAAGGAATCAGTCGTGTCCGATCCAAGAAGCACGAGATGTTAGTTGCAGAGATTGAATACATGCAAAAAAGGGAAATCGAGCTGCAAAACGATAACATGTATCTCCGCTCCAAGATTACTGAAAGAACAGGTCTACAGCAACAAGAATCGAGTGTGATACATCAAGGGACAGTTTACGAGTCGGGTGTTACTTCTTCTCACCAGTCGGGGCAGTATAACCGGAATTATATTGCGGTTAACCTTCTTGAACCGAATCAGAATTCCTCCAACCAAGACCAACCACCTCTGCAACTTGTTTGATTCAGTCTAACATAAGCTTCTTTCCTCAGCCTGAGATCGATCTTATGCATATATATATTCATGTTACACTTACTGTCAAAAAACTTAAAATGCAGATGGTAACGATTTGAGAGGGACCTAATAATTTACATATATCTTGATTATGTAAGTTAAGGCTAAGACAAGAGATCCAAAAATAAAATGGGATTTATTGCTAGTTAGTGTTGC
  • >AT2G42830.2
    AAATGTTAGAAGTAATGGTCCATGTTCTTTCTTTCTTTTTCCTTCTATAACACTTCAGTTTGAAAAAAAACTACCAAACCTTCTGTTTTCTGCAAATGGGTTTTTAAATACTTCCAAAGAAATATTCCTCTAAAAGAAATTATAAACCAAAACAGAAACCAAAAACAAAAAATAAAGTTGAAGCAGCAGTTAAGTGGTACTGAGATAATAAGAATAGTATCTTTAGGCCAATGAACAAATTAACTCTCTCATAATTCATCTTCCCATCCTCACTTCTCTTTCTTTCTGATCATAATTAATCTTGCTAAGCCAGCTAGGGCTTATAGAAATGGAGGGTGGTGCGAGTAATGAAGTAGCAGAGAGCAGCAAGAAGATAGGGAGAGGGAAGATAGAGATAAAGAGGATAGAGAACACTACGAATCGTCAAGTCACTTTCTGCAAACGACGCAATGGTTTACTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGACGCTGAGGTTGCTCTTGTCATCTTCTCCACTCGAGGCCGTCTCTACGAGTACGCCAACAACAGTGTGAGAGGAACAATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGACCATCACCGAAGCTAATACTCAGTACTATCAGCAAGAGGCGTCTAAACTCCGGAGACAGATTCGGGACATTCAGAATTTGAACAGACACATTCTTGGTGAATCTCTTGGTTCCTTGAACTTTAAGGAACTCAAGAACCTTGAAAGTAGGCTTGAGAAAGGAATCAGTCGTGTCCGATCCAAGAAGCACGAGATGTTAGTTGCAGAGATTGAATACATGCAAAAAAGGGAAATCGAGCTGCAAAACGATAACATGTATCTCCGCTCCAAGATTACTGAAAGAACAGGTCTACAGCAACAAGAATCGAGTGTGATACATCAAGGGACAGTTTACGAGTCGGGTGTTACTTCTTCTCACCAGTCGGGGCAGTATAACCGGAATTATATTGCGGTTAACCTTCTTGAACCGAATCAGAATTCCTCCAACCAAGACCAACCACCTCTGCAACTTGTTTGATTCAGTCTAACATAAGCTTCTTTCCTCAGCCTGAGATCGATCTTATGCATATATATATTCATGTTACACTTACTGTCAAAAAACTTAAAATGCAGATGGTAACGATTTGAGAGGGACCTAATAATTTACATATATCTTGATTATGTAAGTTAAGGCTAAGACAAGAGATCCAAAAATAAAATGGGATTTATTGCTAGTTAGTGTTGC
CDS Sequence
  • >AT2G42830.1
    ATGGAGGGTGGTGCGAGTAATGAAGTAGCAGAGAGCAGCAAGAAGATAGGGAGAGGGAAGATAGAGATAAAGAGGATAGAGAACACTACGAATCGTCAAGTCACTTTCTGCAAACGACGCAATGGTTTACTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGACGCTGAGGTTGCTCTTGTCATCTTCTCCACTCGAGGCCGTCTCTACGAGTACGCCAACAACAGTGTGAGAGGAACAATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGACCATCACCGAAGCTAATACTCAGTACTATCAGCAAGAGGCGTCTAAACTCCGGAGACAGATTCGGGACATTCAGAATTTGAACAGACACATTCTTGGTGAATCTCTTGGTTCCTTGAACTTTAAGGAACTCAAGAACCTTGAAAGTAGGCTTGAGAAAGGAATCAGTCGTGTCCGATCCAAGAAGCACGAGATGTTAGTTGCAGAGATTGAATACATGCAAAAAAGGGAAATCGAGCTGCAAAACGATAACATGTATCTCCGCTCCAAGATTACTGAAAGAACAGGTCTACAGCAACAAGAATCGAGTGTGATACATCAAGGGACAGTTTACGAGTCGGGTGTTACTTCTTCTCACCAGTCGGGGCAGTATAACCGGAATTATATTGCGGTTAACCTTCTTGAACCGAATCAGAATTCCTCCAACCAAGACCAACCACCTCTGCAACTTGTTTGA
  • >AT2G42830.2
    ATGGAGGGTGGTGCGAGTAATGAAGTAGCAGAGAGCAGCAAGAAGATAGGGAGAGGGAAGATAGAGATAAAGAGGATAGAGAACACTACGAATCGTCAAGTCACTTTCTGCAAACGACGCAATGGTTTACTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGACGCTGAGGTTGCTCTTGTCATCTTCTCCACTCGAGGCCGTCTCTACGAGTACGCCAACAACAGTGTGAGAGGAACAATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGACCATCACCGAAGCTAATACTCAGTACTATCAGCAAGAGGCGTCTAAACTCCGGAGACAGATTCGGGACATTCAGAATTTGAACAGACACATTCTTGGTGAATCTCTTGGTTCCTTGAACTTTAAGGAACTCAAGAACCTTGAAAGTAGGCTTGAGAAAGGAATCAGTCGTGTCCGATCCAAGAAGCACGAGATGTTAGTTGCAGAGATTGAATACATGCAAAAAAGGGAAATCGAGCTGCAAAACGATAACATGTATCTCCGCTCCAAGATTACTGAAAGAACAGGTCTACAGCAACAAGAATCGAGTGTGATACATCAAGGGACAGTTTACGAGTCGGGTGTTACTTCTTCTCACCAGTCGGGGCAGTATAACCGGAATTATATTGCGGTTAACCTTCTTGAACCGAATCAGAATTCCTCCAACCAAGACCAACCACCTCTGCAACTTGTTTGA
Protein Sequence
  • >AT2G42830.1
    MEGGASNEVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQQESSVIHQGTVYESGVTSSHQSGQYNRNYIAVNLLEPNQNSSNQDQPPLQLV
  • >AT2G42830.2
    MEGGASNEVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQQESSVIHQGTVYESGVTSSHQSGQYNRNYIAVNLLEPNQNSSNQDQPPLQLV