Information report for AT2G42560
Gene Details
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Functional Descriptions
- GO:0005829 — located in — cytosol
- GO:0005634 — located in — nucleus
- GO:0009631 — acts upstream of or within — cold acclimation
- GO:0003674 — enables — molecular_function
Functional Keywords
Literature and News
- Patterns of protein oxidation in Arabidopsis seeds and during germination. DOI: 10.1104/pp.105.062778 ; PMID: 15908592
- Proteomic analysis and extensive protein identification from dry, germinating Arabidopsis seeds and young seedlings. DOI: 10.5483/bmbrep.2005.38.6.650 ; PMID: 16336779
- Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms. DOI: 10.1104/pp.106.082057 ; PMID: 16679420
- Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis. DOI: 10.1104/pp.106.082289 ; PMID: 16920880
- Proteomic and transcriptomic analysis of Arabidopsis seeds: molecular evidence for successive processing of seed proteins and its implication in the stress response to sulfur nutrition. DOI: 10.1111/j.1365-313X.2006.02900.x ; PMID: 17059406
- LEA (late embryogenesis abundant) proteins and their encoding genes in Arabidopsis thaliana. DOI: 10.1186/1471-2164-9-118 ; PMID: 18318901
- The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. DOI: 10.1105/tpc.114.127316 ; PMID: 25005920
- Folding of intrinsically disordered plant LEA proteins is driven by glycerol-induced crowding and the presence of membranes. DOI: 10.1111/febs.14023 ; PMID: 28109185
- Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. DOI: 10.1186/s12870-018-1255-z ; PMID: 29490615
- Stabilization of Dry Sucrose Glasses by Four LEA_4 Proteins from Arabidopsis thaliana. DOI: 10.3390/biom11050615 ; PMID: 33919135
Gene Resources
- UniProt: Q9SIN3
- EMBL: AC007087, CP002685
- AlphaFoldDB: Q9SIN3
- EnsemblPlants: AT2G42560.1
- Gramene: AT2G42560.1
- KEGG: ath:AT2G42560
- Orthologous matrix: YRANAQQ
- ExpressionAtlas: AT2G42560
- PANTHER: PTHR47877, PTHR47877:SF3
Sequences
cDNA Sequence
- >AT2G42560.1
CAACAAAGATAAAGAAAACAGAAAAAAGCATTATCAAACTATCATCTTGAAAGTAAAACTGTGTTTTTGGAAGTGATCGTTAGCATTAACAATGGCGTCAGAGCAAGCAAGGAGAGAAAACAAGGTGACGGAGAGAGAAGTTCAGGTGGAGAAAGACAGAGTCCCAAAGATGACGAGTCATTTCGAGTCCATGGCCGAAAAAGGCAAAGATTCCGACACACACAGGCATCAAACAGAAGGTGGTGGGACACAGTTCGTGTCTCTCTCAGACAAGGGGAGTAACATGCCGGTTTCTGATGAAGGAGAGGGAGAGACGAAGATGAAGAGGACTCAGATGCCTCACTCCGTTGGAAAATTCGTTACTAGCAGCGATTCAGGAACAGGGAAGAAGAAGGATGAGAAAGAGGAGCATGAGAAGGCGTCGCTAGAGGATATTCATGGGTATAGAGCCAATGCTCAGCAGAAGTCAATGGATAGTATAAAAGCAGCAGAGGAAAGGTATAACAAGGCTAAGGAGAGTTTGAGCCATAGTGGACAAGAAGCTCGTGGAGGAAGAGGTGAAGAAATGGTGGGAAAAGGGCGGGACAGTGGTGTCCGTGTTTCTCACGTTGGGGCTGTTGGTGGCGGTGGTGGAGGTGAGGAAAAAGAGAGTGGTGTACATGGCTTTCATGGGGAGAAAGCACGACATGCTGAGCTTTTGGCTGCCGGAGGTGAGGAGATGAGAGAACGTGAAGGTAAAGAATCAGCAGGTGGTGTTGGTGGTCGTAGCGTAAAAGATACGGTAGCCGAGAAAGGACAGCAAGCTAAGGAAAGTGTAGGAGAAGGTGCTCAGAAAGCGGGCAGTGCTACGAGTGAGAAAGCTCAGAGAGCTTCCGAGTATGCAACAGAGAAAGGAAAAGAAGCTGGAAATATGACAGCTGAACAGGCGGCGAGAGCAAAAGACTATGCTCTGCAGAAAGCTGTTGAAGCTAAAGAGACTGCGGCGGAGAAAGCTCAGAGAGCTTCCGAGTATATGAAGGAAACAGGAAGCACAGCGGCTGAACAGGCTGCGAGAGCTAAAGATTACACTCTTCAGAAAGCTGTGGAAGCTAAAGATGTTGCAGCTGAGAAAGCTCAGAGAGCTTCAGAATACATGACAGAGACAGGAAAACAAGCCGGAAATGTTGCAGCTCAGAAAGGGCAAGAGGCAGCTTCAATGACAGCAAAAGCTAAAGATTATACTGTTCAGAAAGCCGGTGAAGCAGCTGGGTACATAAAAGAAACGACAGTGGAAGGAGGAAAAGGAGCTGCACATTATGCAGGAGTGGCAGCTGAGAAAGCCGCTGCGGTTGGGTGGACAGCGGCACATTTCACCACGGAGAAAGTGGTGCAAGGGACGAAAGCGGTTGCAGGTACAGTGGAAGGTGCTGTGGGGTACGCAGGGCATAAGGCGGTGGAAGTAGGATCTAAGGCAGTGGACTTGACTAAGGAGAAAGCTGCAGTGGCTGCTGATACGGTGGTTGGGTATACGGCGAGGAAGAAAGAGGAAGCTCAACACAGAGACCAAGAGATGCATCAGGGAGGTGAGGAAGAAAAGCAACCAGGGTTTGTCTCAGGAGCAAGGAGAGACTTTGGAGAAGAGTACGGGGAAGAAAGAGGGAGTGAGAAAGATGTCTACGGCTATGGAGCAAAAGGAATACCCGGAGAAGGGAGGGGAGATGTTGGGGAGGCAGAGTACGGAAGAGGGAGTGAGAAAGATGTCTTCGGATATGGACCAAAAGGCACGGTCGAAGAAGCAAGGAGAGACGTTGGAGAAGAATACGGAGGAGGAAGAGGCAGTGAGAGATATGTTGAAGAAGAAGGGGTTGGAGCGGGAGGGGTGCTTGGGGCAATCGGCGAGACTATAGCTGAGATTGCACAGACGACAAAGAACATAGTGATTGGTGATGCGCCTGTGAGGACACATGAGCATGGAACTACTGATCCTGACTATATGAGACGGGAACATGGACAACGTTGAAAAGTAATGTATAATGGAGAAATGTTTTGGTGTGTTTTTGCTTTACTTAAAAAGGTCTTTTGTTTTTTTGTATGTAAATAACAAGAAGCTCTGTTTGACAGAGTTTTGTGGTAAATAACAAAAAAAGTTCTGTTTCTGTTAAGAAGTTTGAAGAATATATTAGTGGTTTCCTTTG
CDS Sequence
- >AT2G42560.1
ATGGCGTCAGAGCAAGCAAGGAGAGAAAACAAGGTGACGGAGAGAGAAGTTCAGGTGGAGAAAGACAGAGTCCCAAAGATGACGAGTCATTTCGAGTCCATGGCCGAAAAAGGCAAAGATTCCGACACACACAGGCATCAAACAGAAGGTGGTGGGACACAGTTCGTGTCTCTCTCAGACAAGGGGAGTAACATGCCGGTTTCTGATGAAGGAGAGGGAGAGACGAAGATGAAGAGGACTCAGATGCCTCACTCCGTTGGAAAATTCGTTACTAGCAGCGATTCAGGAACAGGGAAGAAGAAGGATGAGAAAGAGGAGCATGAGAAGGCGTCGCTAGAGGATATTCATGGGTATAGAGCCAATGCTCAGCAGAAGTCAATGGATAGTATAAAAGCAGCAGAGGAAAGGTATAACAAGGCTAAGGAGAGTTTGAGCCATAGTGGACAAGAAGCTCGTGGAGGAAGAGGTGAAGAAATGGTGGGAAAAGGGCGGGACAGTGGTGTCCGTGTTTCTCACGTTGGGGCTGTTGGTGGCGGTGGTGGAGGTGAGGAAAAAGAGAGTGGTGTACATGGCTTTCATGGGGAGAAAGCACGACATGCTGAGCTTTTGGCTGCCGGAGGTGAGGAGATGAGAGAACGTGAAGGTAAAGAATCAGCAGGTGGTGTTGGTGGTCGTAGCGTAAAAGATACGGTAGCCGAGAAAGGACAGCAAGCTAAGGAAAGTGTAGGAGAAGGTGCTCAGAAAGCGGGCAGTGCTACGAGTGAGAAAGCTCAGAGAGCTTCCGAGTATGCAACAGAGAAAGGAAAAGAAGCTGGAAATATGACAGCTGAACAGGCGGCGAGAGCAAAAGACTATGCTCTGCAGAAAGCTGTTGAAGCTAAAGAGACTGCGGCGGAGAAAGCTCAGAGAGCTTCCGAGTATATGAAGGAAACAGGAAGCACAGCGGCTGAACAGGCTGCGAGAGCTAAAGATTACACTCTTCAGAAAGCTGTGGAAGCTAAAGATGTTGCAGCTGAGAAAGCTCAGAGAGCTTCAGAATACATGACAGAGACAGGAAAACAAGCCGGAAATGTTGCAGCTCAGAAAGGGCAAGAGGCAGCTTCAATGACAGCAAAAGCTAAAGATTATACTGTTCAGAAAGCCGGTGAAGCAGCTGGGTACATAAAAGAAACGACAGTGGAAGGAGGAAAAGGAGCTGCACATTATGCAGGAGTGGCAGCTGAGAAAGCCGCTGCGGTTGGGTGGACAGCGGCACATTTCACCACGGAGAAAGTGGTGCAAGGGACGAAAGCGGTTGCAGGTACAGTGGAAGGTGCTGTGGGGTACGCAGGGCATAAGGCGGTGGAAGTAGGATCTAAGGCAGTGGACTTGACTAAGGAGAAAGCTGCAGTGGCTGCTGATACGGTGGTTGGGTATACGGCGAGGAAGAAAGAGGAAGCTCAACACAGAGACCAAGAGATGCATCAGGGAGGTGAGGAAGAAAAGCAACCAGGGTTTGTCTCAGGAGCAAGGAGAGACTTTGGAGAAGAGTACGGGGAAGAAAGAGGGAGTGAGAAAGATGTCTACGGCTATGGAGCAAAAGGAATACCCGGAGAAGGGAGGGGAGATGTTGGGGAGGCAGAGTACGGAAGAGGGAGTGAGAAAGATGTCTTCGGATATGGACCAAAAGGCACGGTCGAAGAAGCAAGGAGAGACGTTGGAGAAGAATACGGAGGAGGAAGAGGCAGTGAGAGATATGTTGAAGAAGAAGGGGTTGGAGCGGGAGGGGTGCTTGGGGCAATCGGCGAGACTATAGCTGAGATTGCACAGACGACAAAGAACATAGTGATTGGTGATGCGCCTGTGAGGACACATGAGCATGGAACTACTGATCCTGACTATATGAGACGGGAACATGGACAACGTTGA
Protein Sequence
- >AT2G42560.1
MASEQARRENKVTEREVQVEKDRVPKMTSHFESMAEKGKDSDTHRHQTEGGGTQFVSLSDKGSNMPVSDEGEGETKMKRTQMPHSVGKFVTSSDSGTGKKKDEKEEHEKASLEDIHGYRANAQQKSMDSIKAAEERYNKAKESLSHSGQEARGGRGEEMVGKGRDSGVRVSHVGAVGGGGGGEEKESGVHGFHGEKARHAELLAAGGEEMREREGKESAGGVGGRSVKDTVAEKGQQAKESVGEGAQKAGSATSEKAQRASEYATEKGKEAGNMTAEQAARAKDYALQKAVEAKETAAEKAQRASEYMKETGSTAAEQAARAKDYTLQKAVEAKDVAAEKAQRASEYMTETGKQAGNVAAQKGQEAASMTAKAKDYTVQKAGEAAGYIKETTVEGGKGAAHYAGVAAEKAAAVGWTAAHFTTEKVVQGTKAVAGTVEGAVGYAGHKAVEVGSKAVDLTKEKAAVAADTVVGYTARKKEEAQHRDQEMHQGGEEEKQPGFVSGARRDFGEEYGEERGSEKDVYGYGAKGIPGEGRGDVGEAEYGRGSEKDVFGYGPKGTVEEARRDVGEEYGGGRGSERYVEEEGVGAGGVLGAIGETIAEIAQTTKNIVIGDAPVRTHEHGTTDPDYMRREHGQR