Information report for AT2G42360
Gene Details
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Functional Descriptions
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- GO:0004842 — enables — ubiquitin-protein transferase activity
Functional Keywords
Literature and News
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Expression profiling of the host response to bacterial infection: the transition from basal to induced defence responses in RPM1-mediated resistance. DOI: 10.1046/j.1365-313x.2003.01653.x ; PMID: 12609040
- The transcriptional innate immune response to flg22. Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis. DOI: 10.1104/pp.103.036749 ; PMID: 15181213
- Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. DOI: 10.1104/pp.104.052423 ; PMID: 15644464
- Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. DOI: 10.1104/pp.105.067983 ; PMID: 16339806
- Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection. DOI: 10.1111/j.1365-313X.2006.02849.x ; PMID: 16925600
- A high-performance, small-scale microarray for expression profiling of many samples in Arabidopsis-pathogen studies. DOI: 10.1111/j.1365-313X.2006.02972.x ; PMID: 17181774
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Iron-dependent modifications of the flower transcriptome, proteome, metabolome, and hormonal content in an Arabidopsis ferritin mutant. DOI: 10.1093/jxb/ert112 ; PMID: 23682113
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
- Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. DOI: 10.1104/pp.104.052423 ; PMID: 15644464
Gene Resources
- UniProt: A0A178VW35
- EMBL: CACRSJ010000105, CACSHJ010000088, LR881467
- AlphaFoldDB: A0A178VW35
- EnsemblPlants: AT2G42360.1
- Gramene: AT2G42360.1
- KEGG: ath:AT2G42360
- Orthologous matrix: DDRDHYW
- ExpressionAtlas: AT2G42360
- InterPro: IPR001841, IPR013083
- PANTHER: PTHR46539, PTHR46539:SF29
- SUPFAM: SSF57850
- PROSITE: PS50089
- Gene3D: 3.30.40.10
- OrthoDB: A0A178VW35
- SWISS-MODEL: A0A178VW35
- Conserved Domain Database: cd16461
Homologs
- Arachis hypogaea arahy.Tifrunner.gnm1.ann1.466F5F, arahy.Tifrunner.gnm1.ann1.WB8Z1Y
- Citrullus lanatus Cla97C10G184660
- Cucumis melo MELO3C013708
- Gossypium arboreum Cotton_A_03388_BGI-A2_v1.0
- Lotus japonicus Lj1g0003826
- Manihot esculenta MANES_02G115400, MANES_01G156900
- Musa acuminata GSMUA_Achr7P25320_001, Ma08_g13730
- Nicotiana attenuata A4A49_24378
- Oryza sativa NBIP1, RAE3, OsATL53
- Prunus persica PRUPE_7G185500
- Solanum lycopersicum Solyc00g007220.3
- Solanum tuberosum PGSC0003DMG400038556
Sequences
cDNA Sequence
- >AT2G42360.1
GTGAAATCATAATAGGCAAATTCAGTCCACAAATTTTTTACGTAGGATTTTGATATTTTCCACTCTTTATATATACAGTCTATAATCTTCAAACCTATCACCTATAAATAATCTACAATCTACCATTTAGTCAACAATGGTGAAATTTCTAAACCCTCGTGAAAGTCTACCTATCTCCCAAAGTTTCTAATTCTATCTACTTCACATTTTTCTCCACCCACCAACTAAAGTATAAGCCTTGGAAAAACAATCAAAATAAGAAATTCTATAAGTCCTTTATTCCTTATATAATAAATCATAAGTTAGTAAACTCTTTTGTTCACTTTTCTTTTGCATCCACCGAAGAAAAACCAGCTTCACAATGAGCTCCAACGACAGAGATCATCGCAGGTTCAACTCTGACCACCACTCATTCTGGCCTAATCCGTCTACTTACGATCTTAACAGCAAGATCATGCTTGCCGCAGTGGCTTCTTTATCTGGAGTTATCCTCATCGTCTTCGCTCTTCATCTTTACGCAAGATTCGTTCTCCGACGCCGTAGAGAAGCTTTCCGTGGCCTCCCCGTCATTTTCCGCCACCCTTTTGAGATGCCTAAGCGTGGCCTCAATCCCACAGTCATCGCTTCTCTCCCTACTTTCACTGTTGGAGCCACTGATGGCGTGGCTGCCTCCGCTACTGAATGCGCAGTGTGTCTAAGCGTGTTAAAGGAGCAAGACAAGGCGAGAGAGTTGCCCAACTGCAAGCACATCTTCCACGTCGACTGTGTTGACACGTGGCTCACCACTTGCTCCACTTGTCCTGTTTGTCGGACTGAAGTTGAGCCAAGACCGAGACTTGAGCCTGAGCCAAGGGAAGGACCAGTCGGTACTGCACCGCAGTTGTTGGTGGAAACCAGGCTGAACTTGACTGTAGAAGCCGCATCCTCTTCTTCCTCAGATAACAAAACAGTTGTATCCCCGGCTTCGCGATTAAATTCGTTTAGGAAAATCTTGACGAGGGAAAGATCTTCGAACAGGATCAACCATTCTTGTCCTGACCAAGATCGTGTGGCAGATCTTGAGAGACATTGAGTCGACATATAGATACATATTATGCATATAAATCATATACACATATCGATAATCTTTAATTTATACAATATCCTCCTTTCTTTTTTACTATATCATGCTCTGTTTTTGGTTTTAGATAGTTTTGTGTAACGGAACACTAAATATATGTTAGTCAAAAGATACATCTGGTGCAG
CDS Sequence
- >AT2G42360.1
ATGAGCTCCAACGACAGAGATCATCGCAGGTTCAACTCTGACCACCACTCATTCTGGCCTAATCCGTCTACTTACGATCTTAACAGCAAGATCATGCTTGCCGCAGTGGCTTCTTTATCTGGAGTTATCCTCATCGTCTTCGCTCTTCATCTTTACGCAAGATTCGTTCTCCGACGCCGTAGAGAAGCTTTCCGTGGCCTCCCCGTCATTTTCCGCCACCCTTTTGAGATGCCTAAGCGTGGCCTCAATCCCACAGTCATCGCTTCTCTCCCTACTTTCACTGTTGGAGCCACTGATGGCGTGGCTGCCTCCGCTACTGAATGCGCAGTGTGTCTAAGCGTGTTAAAGGAGCAAGACAAGGCGAGAGAGTTGCCCAACTGCAAGCACATCTTCCACGTCGACTGTGTTGACACGTGGCTCACCACTTGCTCCACTTGTCCTGTTTGTCGGACTGAAGTTGAGCCAAGACCGAGACTTGAGCCTGAGCCAAGGGAAGGACCAGTCGGTACTGCACCGCAGTTGTTGGTGGAAACCAGGCTGAACTTGACTGTAGAAGCCGCATCCTCTTCTTCCTCAGATAACAAAACAGTTGTATCCCCGGCTTCGCGATTAAATTCGTTTAGGAAAATCTTGACGAGGGAAAGATCTTCGAACAGGATCAACCATTCTTGTCCTGACCAAGATCGTGTGGCAGATCTTGAGAGACATTGA
Protein Sequence
- >AT2G42360.1
MSSNDRDHRRFNSDHHSFWPNPSTYDLNSKIMLAAVASLSGVILIVFALHLYARFVLRRRREAFRGLPVIFRHPFEMPKRGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVETRLNLTVEAASSSSSDNKTVVSPASRLNSFRKILTRERSSNRINHSCPDQDRVADLERH