Gene Details:
- Gene ID: AT2G42350
- Gene Symbol: ATL40
- Gene Name: Arabidopsis Tóxicos en Levadura 40
- Description: RING/U-box superfamily protein;(source:Araport11)
- TAIR Accession: locus:2053776
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
Gene Ontology:
- GO:0019438 — acts upstream of or within — aromatic compound biosynthetic process
- GO:0042742 — acts upstream of or within — defense response to bacterium
- GO:0044550 — acts upstream of or within — secondary metabolite biosynthetic process
- GO:1901362 — acts upstream of or within — organic cyclic compound biosynthetic process
- GO:0005634 — located in — nucleus
Function-related keywords:
Literature:
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- The transcriptional innate immune response to flg22. Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis. DOI: 10.1104/pp.103.036749 ; PMID: 15181213
- Elucidating the germination transcriptional program using small molecules. DOI: 10.1104/pp.107.110841 ; PMID: 18359847
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Sequences:
cDNA Sequence
- >AT2G42350.1
GTAAAGTCAACAATTTCCTTCGAAAATTTATGAGTATTCTGCTGCCTATTTTCTCACACCCACCAATCATATTGTATGTCCCTTGAATCCAAGTAATAGCTATGAAGAATAAACAAAAGTAGAAAAAATAATAAAAAACAATTTAATTACACAACATGAGATCCATTCAATCTATTAGTAACTTGTTATTAGATTATAGTAACCACTTTCTGTCTCTTGTTCTACCAAAACAAAACGCTTCATCATGAGCTCTAACAACAAAACTGATGATTCCGACGACCGTTCTTTCTGGCAAAACTCGACTTCTTACGATGCCAGCAGCAAGATTTTCCTCGTCACCACCGTTTCCTTCTCTATTATTATCATCATCGTGTTCGTTTATTATCTCTACGCAAAATTCGTTCTCCACCGTAGATCAGCCTTCCAAGACCTCTCCTTCTCTGTCGTTTCTCAGCCGCCAAAACGTGGCCTCGATTCTCTAGTCATCGCTTCTCTCCCAACGTTCGTGGTTGGAATCAAGAATGACGTGGCGGGTACGGAATGTGCGGTTTGTCTAAGCTTATTGGAGGAGAAAGATAATGCAAGGATGTTACCGAACTGCAAACACGTGTTCCACGTGTCTTGCGTTGACACGTGGCTCACCACGCAGTCCACTTGTCCCGTTTGTCGAACTGAAGCCGAGCCAAGTCATCCAAGGCTTGAGCCTGAGCCTAGGGAAGGGCCAGTTGGCGACTTTGCACCGCCGTTAGATTTCGCGGGGGTTGATAACAAAACCGGCGGATCATCGGTTTCGAGGTTAGACTCGTTCCGGAGGATTTTGACAAGGGAAAGATCTTCGAACAGGCGGGATCATTCTCGCGTTGACCAAGATCGTGAATTGGATATTGAAAGACAGTGAATTCAGTATATAGTATATACACACATACGCCGGTTAAAAAAAAAAAAGTATAAACACACATGCATCCATAATTAATCCTTAATTCATGAACCATAATACTTCTTCTTCCTTTTAACTTTTTATTCTTGTACTGAAATCTTTTGTATGTGTAAATATGAATGGCACACTTTTTGTATGTTACAGTAATTACAAAAACATTGTTGCTTATTGCTTAACGTGTGAAAAGGGGAAAAGAAAAAAAGAAAGTTGAACTTGTAACATACAATCGAGACAATTTTGTTATTAAGGTATATCTAATGCGTGTGTGCCCTACATAGACGACTCTTCTTCAAGTCAAACTTTGTGGTTCCCACACGTATCCTCACAGGCTCACACGTTTTAACCTTTAATTTTCGTATTTTC
CDS Sequence
- >AT2G42350.1
ATGAGCTCTAACAACAAAACTGATGATTCCGACGACCGTTCTTTCTGGCAAAACTCGACTTCTTACGATGCCAGCAGCAAGATTTTCCTCGTCACCACCGTTTCCTTCTCTATTATTATCATCATCGTGTTCGTTTATTATCTCTACGCAAAATTCGTTCTCCACCGTAGATCAGCCTTCCAAGACCTCTCCTTCTCTGTCGTTTCTCAGCCGCCAAAACGTGGCCTCGATTCTCTAGTCATCGCTTCTCTCCCAACGTTCGTGGTTGGAATCAAGAATGACGTGGCGGGTACGGAATGTGCGGTTTGTCTAAGCTTATTGGAGGAGAAAGATAATGCAAGGATGTTACCGAACTGCAAACACGTGTTCCACGTGTCTTGCGTTGACACGTGGCTCACCACGCAGTCCACTTGTCCCGTTTGTCGAACTGAAGCCGAGCCAAGTCATCCAAGGCTTGAGCCTGAGCCTAGGGAAGGGCCAGTTGGCGACTTTGCACCGCCGTTAGATTTCGCGGGGGTTGATAACAAAACCGGCGGATCATCGGTTTCGAGGTTAGACTCGTTCCGGAGGATTTTGACAAGGGAAAGATCTTCGAACAGGCGGGATCATTCTCGCGTTGACCAAGATCGTGAATTGGATATTGAAAGACAGTGA
Protein Sequence
- >AT2G42350.1
MSSNNKTDDSDDRSFWQNSTSYDASSKIFLVTTVSFSIIIIIVFVYYLYAKFVLHRRSAFQDLSFSVVSQPPKRGLDSLVIASLPTFVVGIKNDVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPSHPRLEPEPREGPVGDFAPPLDFAGVDNKTGGSSVSRLDSFRRILTRERSSNRRDHSRVDQDRELDIERQ