Information report for AT2G42120
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0019219 — acts upstream of or within — regulation of nucleobase-containing compound metabolic process
- GO:0005634 — located in — nucleus
- GO:0048316 — acts upstream of or within — seed development
- GO:0016070 — acts upstream of or within — RNA metabolic process
- GO:0019538 — acts upstream of or within — protein metabolic process
- GO:0051301 — acts upstream of or within — cell division
- GO:0043625 — part of — delta DNA polymerase complex
- GO:0003677 — enables — DNA binding
- GO:1903046 — acts upstream of or within — meiotic cell cycle process
- GO:0006271 — involved in — DNA strand elongation involved in DNA replication
- GO:0009888 — acts upstream of or within — tissue development
- GO:0022607 — acts upstream of or within — cellular component assembly
- GO:0003887 — enables — DNA-directed DNA polymerase activity
- GO:0010468 — acts upstream of or within — regulation of gene expression
Functional Keywords
Literature and News
- A genome-wide identification of E2F-regulated genes in Arabidopsis. DOI: 10.1046/j.1365-313x.2003.01662.x ; PMID: 12609051
- Genome-wide identification of potential plant E2F target genes. DOI: 10.1104/pp.105.066290 ; PMID: 16126853
- Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice. DOI: 10.1104/pp.107.101105 ; PMID: 17556508
- The Second Subunit of DNA Polymerase Delta Is Required for Genomic Stability and Epigenetic Regulation. DOI: 10.1104/pp.15.01976 ; PMID: 27208288
Gene Resources
- UniProt: F4IM00
- EMBL: CP002685
- AlphaFoldDB: F4IM00
- EnsemblPlants: AT2G42120.1
- Gramene: AT2G42120.1
- ExpressionAtlas: AT2G42120
- InterPro: IPR007185, IPR024826, IPR040663
- PANTHER: PTHR10416, PTHR10416:SF0
- Gene3D: 2.40.50.430, 3.60.21.50
- SWISS-MODEL: F4IM00
- Conserved Domain Database: cd07387
Sequences
cDNA Sequence
- >AT2G42120.1
GCCAAAGTTGAAAGTTGAAACCTTTTCTCAGAATTTTCTGCTCAGTTCTGAGTTTTTTTTTCCCGCCATGGAAATCGACTCCGAGAAAATTCACGAAAGGAAGCAATCCGATTACAATTCGCTGCAGGATGAGAGATTCGAGATACAGAAGGAGATGTACAGAGGTCAGCAATACAGTCAGATTTACTTTGCTCGTCTTCATCTCATGAGAACACTTCTCTACTCTCTTGCTCCTACTTGGAAATCTCATTTGCCTGTGTGTAAGGTTTTGGGACTTGAAAAAGGAAAAGAATGCATAATTGTGGGAACCTTGTTCAAACACATGAAGCTTAAACCTTGTGTTCTCGATGAATATTCTAAAGAGAGGTCAGTTACTCCGCTTGTTAAACCACATAACTTTATGCATCCTGATGATAATCTGATCCTCGAAGACGAGAGTGGGAGAGTTAAGCTTGCTGGTTCCGCACTTTCACCTGCGATTTATGTGACAGGTGTTGTTGTTGCACTGCATGGGAAGGAAACTAATGCTGGTGAATTCTTTGTTGAGGATGTACTAGAAGCTGGTTTACCACCTCAGATTGAGCGGCCTATCGATCTACAGGAAGATAAATATGTCGTGTTATTGTCGGGCCTTTGTATTGGAAGCAAATCGGCTAATCCCCTGCAGTTTCAGCTTCTTGTTGACCATATAACTGGGCATCTCGGAGATGAGGAGGAACAAGGCCTTGCAGCACAGATAGTTCATGTAGTAATTGCTGGAAACTCTTTTGAATTTCCCCGCAAACTCATTAATGGCCAGAACTTGGCCTCGAAAGATCAATCGACACTGTATGAGCCCATCAAAGAGCTTGATATCATGTTAAGCCAGATAGCTGCAGGAGTTTCAGTAGATATCATGCCAGGCACGAATGATCCAGCTAACTTCGCATTGCCTCAGCAGCCTCTGAATAGATGTCTTTTCCCTGGATCTTCACCTTATAACACCTTCAGATCATGTACAAATCCTCACTCATTTGATGTCGATAATATCAGATTTCTTGGAACTTCTGGTCAGAACATCGATGACCTTGGCAAGTACTCAGAGGCTAAGAGCAAGCTTGATTTTGTGGAAAGAACGCTGAGGTGGAGACATCTTGCCCCAACTGCACCTAATACACTCGGTTGTTATCCTTTCACCGATAGAGACCCTTTCTTGATTGAAACCTGCCCGCATGTCTACTTCGTCGGGAATCAAGATAAATATGACAACCGTTTGATAAAGGGGTCAGAAGGGCAGCTTGTCCGGTTGATCTGCATTCCTAAGTTCTGTGAGACCGGTATTGCTGTTGCGGTGAACCTAAGAAATCTGGAATGTCACACTTTAAGCTTTAGCACTCAGATAAACCAATCATAACATTGAGTTGCTACTTTGGTAGATTATTTCCTGTCTTGAAGATGTAATGTTGAGCTTTTTCAGTAACACACTCCTATGTTCTAACCAAATGTTTGTTAAAAATCCTTTTTCTTGAGTGGAACTTC - >AT2G42120.2
GCCAAAGTTGAAAGTTGAAACCTTTTCTCAGAATTTTCTGCTCAGTTCTGAGTTTTTTTTTCCCGCCATGGAAATCGACTCCGAGAAAATTCACGAAAGGAAGCAATCCGATTACAATTCGCTGCAGGATGAGAGATTCGAGATACAGAAGGAGATGTACAGAGGTCAGCAATACAGTCAGATTTACTTTGCTCGTCTTCATCTCATGAGAACACTTCTCTACTCTCTTGCTCCTACTTGGAAATCTCATTTGCCTGTGTGTAAGGTTTTGGGACTTGAAAAAGGAAAAGAATGCATAATTGTGGGAACCTTGTTCAAACACATGAAGCTTAAACCTTGTGTTCTCGATGAATATTCTAAAGAGAGGTCAGTTACTCCGCTTGTTAAACCACATAACTTTATGCATCCTGATGATAATCTGATCCTCGAAGACGAGAGTGGGAGAGTTAAGCTTGCTGGTTCCGCACTTTCACCTGCGATTTATGTGACAGGTGTTGTTGTTGCACTGCATGGGAAGGAAACTAATGCTGGTGAATTCTTTGTTGAGGATGTACTAGAAGCTGGTTTACCACCTCAGATTGAGCGGCCTATCGATCTACAGGAAGATAAATATGTCGTGTTATTGTCGGGCCTTTGTATTGGAAGCAAATCGGCTAATCCCCTGCAGTTTCAGCTTCTTGTTGACCATATAACTGGGCATCTCGGAGATGAGGAGGAACAAGGCCTTGCAGCACAGATAGTTCATGTAGTAATTGCTGGAAACTCTTTTGAATTTCCCCGCAAACTCATTAATGGCCAGAACTTGGCCTCGAAAGATCAATCGACACTGTATGAGCCCATCAAAGAGCTTGATATCATGTTAAGCCAGATAGCTGCAGGAGTTTCAGTAGATATCATGCCAGGCACGAATGATCCAGCTAACTTCGCATTGCCTCAGCAGCCTCTGAATAGATGTCTTTTCCCTGGATCTTCACCTTATAACACCTTCAGATCATGTACAAATCCTCACTCATTTGATGTCGATAATATCAGATTTCTTGGAACTTCTGGTCAGAACATCGATGACCTTGGCAAGTACTCAGAGGCTAAGAGCAAGCTTGATTTTGTGGAAAGAACGCTGAGGTGGAGACATCTTGCCCCAACTGCACCTAATACACTCGGTTGTTATCCTTTCACCGATAGAGACCCTTTCTTGATTGAAACCTGCCCGCATGTCTACTTCGTCGGGAATCAAGATAAATATGACAACCGTTTGATAAAGGGGTCAGAAGGGCAGCTTGTCCGGTTGATCTGCATTCCTAAGTTCTGTGAGACCGGTATTGCTGTTGCGGTGAACCTAAGAAATCTGGAATGTCACACTTTAAGCTTTAGCACTCAGATAAACCAATCATAACATTGAGTTGCTACTTTGGTAGATTATTTCCTGTCTTGAAGATGTAATGTTGAGCTTTTTCAGTAACACACTCCTATGTTCTAACCAAATGTTTGTTAAAAATCCTTTTTCTTGAGTGGAACTTC
CDS Sequence
- >AT2G42120.1
ATGGAAATCGACTCCGAGAAAATTCACGAAAGGAAGCAATCCGATTACAATTCGCTGCAGGATGAGAGATTCGAGATACAGAAGGAGATGTACAGAGGTCAGCAATACAGTCAGATTTACTTTGCTCGTCTTCATCTCATGAGAACACTTCTCTACTCTCTTGCTCCTACTTGGAAATCTCATTTGCCTGTGTGTAAGGTTTTGGGACTTGAAAAAGGAAAAGAATGCATAATTGTGGGAACCTTGTTCAAACACATGAAGCTTAAACCTTGTGTTCTCGATGAATATTCTAAAGAGAGGTCAGTTACTCCGCTTGTTAAACCACATAACTTTATGCATCCTGATGATAATCTGATCCTCGAAGACGAGAGTGGGAGAGTTAAGCTTGCTGGTTCCGCACTTTCACCTGCGATTTATGTGACAGGTGTTGTTGTTGCACTGCATGGGAAGGAAACTAATGCTGGTGAATTCTTTGTTGAGGATGTACTAGAAGCTGGTTTACCACCTCAGATTGAGCGGCCTATCGATCTACAGGAAGATAAATATGTCGTGTTATTGTCGGGCCTTTGTATTGGAAGCAAATCGGCTAATCCCCTGCAGTTTCAGCTTCTTGTTGACCATATAACTGGGCATCTCGGAGATGAGGAGGAACAAGGCCTTGCAGCACAGATAGTTCATGTAGTAATTGCTGGAAACTCTTTTGAATTTCCCCGCAAACTCATTAATGGCCAGAACTTGGCCTCGAAAGATCAATCGACACTGTATGAGCCCATCAAAGAGCTTGATATCATGTTAAGCCAGATAGCTGCAGGAGTTTCAGTAGATATCATGCCAGGCACGAATGATCCAGCTAACTTCGCATTGCCTCAGCAGCCTCTGAATAGATGTCTTTTCCCTGGATCTTCACCTTATAACACCTTCAGATCATGTACAAATCCTCACTCATTTGATGTCGATAATATCAGATTTCTTGGAACTTCTGGTCAGAACATCGATGACCTTGGCAAGTACTCAGAGGCTAAGAGCAAGCTTGATTTTGTGGAAAGAACGCTGAGGTGGAGACATCTTGCCCCAACTGCACCTAATACACTCGGTTGTTATCCTTTCACCGATAGAGACCCTTTCTTGATTGAAACCTGCCCGCATGTCTACTTCGTCGGGAATCAAGATAAATATGACAACCGTTTGATAAAGGGGTCAGAAGGGCAGCTTGTCCGGTTGATCTGCATTCCTAAGTTCTGTGAGACCGGTATTGCTGTTGCGGTGAACCTAAGAAATCTGGAATGTCACACTTTAAGCTTTAGCACTCAGATAAACCAATCATAA - >AT2G42120.2
ATGGAAATCGACTCCGAGAAAATTCACGAAAGGAAGCAATCCGATTACAATTCGCTGCAGGATGAGAGATTCGAGATACAGAAGGAGATGTACAGAGGTCAGCAATACAGTCAGATTTACTTTGCTCGTCTTCATCTCATGAGAACACTTCTCTACTCTCTTGCTCCTACTTGGAAATCTCATTTGCCTGTGTGTAAGGTTTTGGGACTTGAAAAAGGAAAAGAATGCATAATTGTGGGAACCTTGTTCAAACACATGAAGCTTAAACCTTGTGTTCTCGATGAATATTCTAAAGAGAGGTCAGTTACTCCGCTTGTTAAACCACATAACTTTATGCATCCTGATGATAATCTGATCCTCGAAGACGAGAGTGGGAGAGTTAAGCTTGCTGGTTCCGCACTTTCACCTGCGATTTATGTGACAGGTGTTGTTGTTGCACTGCATGGGAAGGAAACTAATGCTGGTGAATTCTTTGTTGAGGATGTACTAGAAGCTGGTTTACCACCTCAGATTGAGCGGCCTATCGATCTACAGGAAGATAAATATGTCGTGTTATTGTCGGGCCTTTGTATTGGAAGCAAATCGGCTAATCCCCTGCAGTTTCAGCTTCTTGTTGACCATATAACTGGGCATCTCGGAGATGAGGAGGAACAAGGCCTTGCAGCACAGATAGTTCATGTAGTAATTGCTGGAAACTCTTTTGAATTTCCCCGCAAACTCATTAATGGCCAGAACTTGGCCTCGAAAGATCAATCGACACTGTATGAGCCCATCAAAGAGCTTGATATCATGTTAAGCCAGATAGCTGCAGGAGTTTCAGTAGATATCATGCCAGGCACGAATGATCCAGCTAACTTCGCATTGCCTCAGCAGCCTCTGAATAGATGTCTTTTCCCTGGATCTTCACCTTATAACACCTTCAGATCATGTACAAATCCTCACTCATTTGATGTCGATAATATCAGATTTCTTGGAACTTCTGGTCAGAACATCGATGACCTTGGCAAGTACTCAGAGGCTAAGAGCAAGCTTGATTTTGTGGAAAGAACGCTGAGGTGGAGACATCTTGCCCCAACTGCACCTAATACACTCGGTTGTTATCCTTTCACCGATAGAGACCCTTTCTTGATTGAAACCTGCCCGCATGTCTACTTCGTCGGGAATCAAGATAAATATGACAACCGTTTGATAAAGGGGTCAGAAGGGCAGCTTGTCCGGTTGATCTGCATTCCTAAGTTCTGTGAGACCGGTATTGCTGTTGCGGTGAACCTAAGAAATCTGGAATGTCACACTTTAAGCTTTAGCACTCAGATAAACCAATCATAA
Protein Sequence
- >AT2G42120.1
MEIDSEKIHERKQSDYNSLQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSHLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLINGQNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRNLECHTLSFSTQINQS - >AT2G42120.2
MEIDSEKIHERKQSDYNSLQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSHLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLINGQNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRNLECHTLSFSTQINQS