Information report for AT2G41945
Gene Details
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Functional Descriptions
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0005634 — located in — nucleus
- GO:0010431 — acts upstream of or within — seed maturation
- GO:0003674 — enables — molecular_function
- SALK_022583 — Heterozygotes segregate for collapsed seeds which arrest at the bent cotyledon stage. Homozygous seeds can be rescued if cultured before desiccation.
Functional Keywords
Literature and News
- Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. DOI: 10.1006/jmbi.2000.4315 ; PMID: 11152613
- Retarded Embryo Development 1 (RED1) regulates embryo development, seed maturation and plant growth in Arabidopsis. DOI: 10.1016/j.jgg.2016.04.009 ; PMID: 27477025
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
Gene Resources
- UniProt: A8MQP4
- EMBL: CP002685
- AlphaFoldDB: A8MQP4
- EnsemblPlants: AT2G41945.2
- Gramene: AT2G41945.2
- KEGG: ath:AT2G41945
- ExpressionAtlas: AT2G41945
- PANTHER: PTHR34459, PTHR34459:SF2
- OrthoDB: A8MQP4
Sequences
cDNA Sequence
- >AT2G41945.2
GTGGAGAAGGAACATTCTCGGAGAGAAGAGAGACGGTGATCGGAGAGAAAGAGAGGATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGCTGAGTTTGCACCGTTTGGTCCTTCCCCGTAATATAGACAGCGACTGTCCTGTTCCGCGACTAAAGACTTAAGGCCTTGGGGCATATGGACTTCATTCAAAGTCTGTTCACTGGAGGCAATAAGAAGAAACATGGTCATGTGCCGTGGCTTGTAACCAGTATTTTTATTTTCTTATTATATTTTGAGCATTGTGGTATATGGGGAGAGAGAGAGAGAGATGAACAAGGAAATATGGTAGACAGCTTGTAGTTGATGATTCTCTTTGAACTGCCCAAAAAAAGGTTAGAAAAGAAA - >AT2G41945.3
GTGGAGAAGGAACATTCTCGGAGAGAAGAGAGACGGTGATCGGAGAGAAAGAGAGGATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGCTGAGTTTGCACCGTTTGGTCCTTCCCCGTAATATAGACAGCGACTGTCCTGTTCCGCGACTAAAGACTTAAGGCCTTGGGGCATATGGACTTCATTCAAAGTCTGTTCACTGGAGGCAATAAGAAGAAACATGGTCATGTGCCGTGGCTTGTAACCAGTATTTTTATTTTCTTATTATATTTTGAGCATTGTGGTATATGGGGAGAGAGAGAGAGAGATGAACAAGGAAATATGGTAGACAGCTTGTAGTTGATGATTCTCTTTGAACTGCCCAAAAAAAGGTTAGAAAAGAAA - >AT2G41945.1
GTGGAGAAGGAACATTCTCGGAGAGAAGAGAGACGGTGATCGGAGAGAAAGAGAGGATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGCTGAGTTTGCACCGTTTGGTCCTTCCCCGTAATATAGACAGCGACTGTCCTGTTCCGCGACTAAAGACTTAAGGCCTTGGGGCATATGGACTTCATTCAAAGTCTGTTCACTGGAGGCAATAAGAAGAAACATGGTCATGTGCCGTGGCTTGTAACCAGTATTTTTATTTTCTTATTATATTTTGAGCATTGTGGTATATGGGGAGAGAGAGAGAGAGATGAACAAGGAAATATGGTAGACAGCTTGTAGTTGATGATTCTCTTTGAACTGCCCAAAAAAAGGTTAGAAAAGAAA
CDS Sequence
- >AT2G41945.2
ATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGCTGAGTTTGCACCGTTTGGTCCTTCCCCGTAA - >AT2G41945.3
ATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGCTGAGTTTGCACCGTTTGGTCCTTCCCCGTAA - >AT2G41945.1
ATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCGACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCTAATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCTGGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTATCTTCAAAATCGGTTTTCCGGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCTTCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAGGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGTGCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGAACTCAGAAAGAAGAGGCTGAGTTTGCACCGTTTGGTCCTTCCCCGTAA
Protein Sequence
- >AT2G41945.2
MGTRQVYEEKLRRGNLDYDPTMNPGLGSARCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGGYALPKFAQLTVTSYYASSSASHYGISMLTRRIEEAHLSRTQKEEAEFAPFGPSP - >AT2G41945.3
MGTRQVYEEKLRRGNLDYDPTMNPGLGSARCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGGYALPKFAQLTVTSYYASSSASHYGISMLTRRIEEAHLSRTQKEEAEFAPFGPSP - >AT2G41945.1
MGTRQVYEEKLRRGNLDYDPTMNPGLGSARCPRCLSLLNPNSEKGEWTITPVLHDAAAVAGSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGGYALPKFAQLTVTSYYASSSASHYGISMLTRRIEEAHLSRTQKEEAEFAPFGPSP