Information report for AT2G41800
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- GO:0009505 — located in — plant-type cell wall
- GO:0051511 — acts upstream of or within — negative regulation of unidimensional cell growth
- GO:0009506 — located in — plasmodesma
- GO:1902066 — acts upstream of or within — regulation of cell wall pectin metabolic process
- GO:0003674 — enables — molecular_function
- teebe-1 — Unaffected primary root growth and lateral root density compared to wild type. Slight but significant decrease in pectin methylesterase activity and increase in both hypocotyl length and epidermal cell length.
Functional Keywords
Literature and News
- Cell cycle-regulated gene expression in Arabidopsis. DOI: 10.1074/jbc.M207570200 ; PMID: 12169696
- Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: a critical analysis. DOI: 10.1002/elps.200305608 ; PMID: 14595688
- Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis. DOI: 10.1104/pp.103.034736 ; PMID: 15047898
- A proteomic approach to apoplastic proteins involved in cell wall regeneration in protoplasts of Arabidopsis suspension-cultured cells. DOI: 10.1093/pcp/pci089 ; PMID: 15769804
- Genome-wide identification of genes expressed in Arabidopsis pistils specifically along the path of pollen tube growth. DOI: 10.1104/pp.105.060558 ; PMID: 15894741
- Arabidopsis cell wall proteome defined using multidimensional protein identification technology. DOI: 10.1002/pmic.200500046 ; PMID: 16287169
- Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. DOI: 10.1104/pp.106.081240 ; PMID: 16648215
- The cell wall DUF642 At2g41800 (TEB) protein is involved in hypocotyl cell elongation. DOI: 10.1016/j.plantsci.2016.10.007 ; PMID: 27968989
- Cell Wall Localization of Two DUF642 Proteins, BIIDXI and TEEBE, during Meloidogyne incognita Early Inoculation. DOI: 10.5423/PPJ.NT.05.2017.0101 ; PMID: 29238286
- Overview of the Role of Cell Wall DUF642 Proteins in Plant Development. DOI: 10.3390/ijms20133333 ; PMID: 31284602
- Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: a critical analysis. DOI: 10.1002/elps.200305608 ; PMID: 14595688
- Arabidopsis cell wall proteome defined using multidimensional protein identification technology. DOI: 10.1002/pmic.200500046 ; PMID: 16287169
Gene Resources
- UniProt: A0A654F106
- EMBL: CACRSJ010000105
- AlphaFoldDB: A0A654F106
- EnsemblPlants: AT2G41800.1
- Gramene: AT2G41800.1
- KEGG: ath:AT2G41800
- Orthologous matrix: HVFANFS
- ExpressionAtlas: AT2G41800
- InterPro: IPR006946, IPR008979, IPR052437
- PANTHER: PTHR31265, PTHR31265:SF23
- SUPFAM: SSF49785
- Gene3D: 2.60.120.260
Homologs
- Brassica napus BnaC02G0045000ZS, BnaA02G0040000ZS
- Brassica oleracea Bo2g010390
- Brassica rapa Bra023324
- Manihot esculenta MANES_16G119100
- Populus trichocarpa POPTR_006G250100v3, POPTR_018G031100v3
- Prunus persica PRUPE_1G472800
- Rosa chinensis RchiOBHm_Chr6g0298661
- Sesamum indicum SIN_1021602
- Vitis vinifera VIT_04s0008g05010
Sequences
cDNA Sequence
- >AT2G41800.1
GTTTTGTTGTTGTATATTTCCAAAAATGTACATGCTGCTGCTTCCTCTTTGTTTCTTATTTATAATATCTCATGTCAAGTGATAACTGATAAGTATAAAACCTCCTATATATAGCCCACAAGGTCCTCATTGATATAGGCGAACTAATTAATAAGACTTTAAAATGTCTCTCTATCACTCTCTTAGCATTTTCCTCCTCCTATCTCTCTGCCATGGCTCTTACAGTCTTCAACCACGTCGAGTTCCTCATCTAGACGGGATTCTCCCAAATGGAAACTTCGAGATAACCCCTCTCAAATCAAACATGAAGGGTCGACAAATAATCGGGGCTAACTCTCTTCCTCATTGGGAAATCGCCGGGCACGTGGAGCTAGTCTCCGGTGGACCTCAGCCTGGAGGATTCTATTTCCCCGTTCCACGTGGAGTCCACGCGGTTAGACTCGGAAACTTGGGCACCATCTCTCAGAACGTGAGGGTGAAGAGTGGTTTGGTCTACTCTCTAACGTTCGGAGCTACGAGGACTTGTGCTCAGGATGAGAACATCAAAGTCTCTGTGCCTGGTCAGGCCAATGAGCTTCCGCTCCAGACCGTCTTTAGCTCCGACGGTGGAGACACTTACGCTTGGGCTTTCAAGGCAACTTCTGATGTGGTTAAGGTCACTTTCCATAACCCTGGTGTTCAAGAAGACCGCACGTGTGGACCTCTCTTAGATGTTGTCGCAATCAAGGAGATTCTTCCTCTCCGGTATACCAGAGGAAACTTGGTGAAAAATGGAGGATTCGAGATCGGTCCACATGTTTTCGCTAATTTCTCAACCGGAATCTTGATTCCAGCAAGAATCCAAGACTTCATCTCTCCTCTTCCGGGATGGATCGTCGAATCCCTTAAACCAGTGAAGTATATCGATAGACGTCATTTCAAAGTTCCTTATGGACAAGGGGCCGTCGAGCTAGTTGCCGGAAGAGAAAGCGCAATAGCTCAGATCATCCGAACCATCGCTGGTAAAGCCTATATGCTCTCATTCGCGGTTGGTGATGCACAAAACGGTTGCCACGGGTCGATGATGGTGGAAGCGTTCGCAGGAAGAGAACCGTTTAAGCTTTCTTTTATGTCAGAAGGTAAAGGAGCGTTCAAAACAGGGCATTTTAGGTTTGTTGCTGATTCGGATCGAACGAGGCTAACGTTTTATAGTGCGTTTTATCATACAAAGCTTCATGACTTCGGCCATCTTTGTGGGCCTGTTCTTGATAGCGTTGTTGTTACCCTGGCCCGTTAACAATTTGTGGCTTTTAATTCTTATTAGACTGAATATTCGAAACACTATACTCTATTCGTAACGAATTTGTGGTTGCACTACATTTTGTTGTTTCTTGTCATTAGTCTTGTCACTCATACCAGTGATGCAGAAAATATTTATAATATGTATGGAAACTTTGTGGAAATTAAACTAAAATTAAAAAGAATGGTGAGATAGATTTCAATTTAATAATAATTTACATCTTTC
CDS Sequence
- >AT2G41800.1
ATGTCTCTCTATCACTCTCTTAGCATTTTCCTCCTCCTATCTCTCTGCCATGGCTCTTACAGTCTTCAACCACGTCGAGTTCCTCATCTAGACGGGATTCTCCCAAATGGAAACTTCGAGATAACCCCTCTCAAATCAAACATGAAGGGTCGACAAATAATCGGGGCTAACTCTCTTCCTCATTGGGAAATCGCCGGGCACGTGGAGCTAGTCTCCGGTGGACCTCAGCCTGGAGGATTCTATTTCCCCGTTCCACGTGGAGTCCACGCGGTTAGACTCGGAAACTTGGGCACCATCTCTCAGAACGTGAGGGTGAAGAGTGGTTTGGTCTACTCTCTAACGTTCGGAGCTACGAGGACTTGTGCTCAGGATGAGAACATCAAAGTCTCTGTGCCTGGTCAGGCCAATGAGCTTCCGCTCCAGACCGTCTTTAGCTCCGACGGTGGAGACACTTACGCTTGGGCTTTCAAGGCAACTTCTGATGTGGTTAAGGTCACTTTCCATAACCCTGGTGTTCAAGAAGACCGCACGTGTGGACCTCTCTTAGATGTTGTCGCAATCAAGGAGATTCTTCCTCTCCGGTATACCAGAGGAAACTTGGTGAAAAATGGAGGATTCGAGATCGGTCCACATGTTTTCGCTAATTTCTCAACCGGAATCTTGATTCCAGCAAGAATCCAAGACTTCATCTCTCCTCTTCCGGGATGGATCGTCGAATCCCTTAAACCAGTGAAGTATATCGATAGACGTCATTTCAAAGTTCCTTATGGACAAGGGGCCGTCGAGCTAGTTGCCGGAAGAGAAAGCGCAATAGCTCAGATCATCCGAACCATCGCTGGTAAAGCCTATATGCTCTCATTCGCGGTTGGTGATGCACAAAACGGTTGCCACGGGTCGATGATGGTGGAAGCGTTCGCAGGAAGAGAACCGTTTAAGCTTTCTTTTATGTCAGAAGGTAAAGGAGCGTTCAAAACAGGGCATTTTAGGTTTGTTGCTGATTCGGATCGAACGAGGCTAACGTTTTATAGTGCGTTTTATCATACAAAGCTTCATGACTTCGGCCATCTTTGTGGGCCTGTTCTTGATAGCGTTGTTGTTACCCTGGCCCGTTAA
Protein Sequence
- >AT2G41800.1
MSLYHSLSIFLLLSLCHGSYSLQPRRVPHLDGILPNGNFEITPLKSNMKGRQIIGANSLPHWEIAGHVELVSGGPQPGGFYFPVPRGVHAVRLGNLGTISQNVRVKSGLVYSLTFGATRTCAQDENIKVSVPGQANELPLQTVFSSDGGDTYAWAFKATSDVVKVTFHNPGVQEDRTCGPLLDVVAIKEILPLRYTRGNLVKNGGFEIGPHVFANFSTGILIPARIQDFISPLPGWIVESLKPVKYIDRRHFKVPYGQGAVELVAGRESAIAQIIRTIAGKAYMLSFAVGDAQNGCHGSMMVEAFAGREPFKLSFMSEGKGAFKTGHFRFVADSDRTRLTFYSAFYHTKLHDFGHLCGPVLDSVVVTLAR