Information report for AT2G41660
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020132 — columella root cap cell — célula de la columela del caliptra de la raíz (Spanish, exact), 柱軸根冠細胞 (Japanese, exact)
- GO:0032541 — located in — cortical endoplasmic reticulum
- GO:0003674 — enables — molecular_function
- GO:0005739 — located in — mitochondrion
- GO:0005789 — located in — endoplasmic reticulum membrane
- GO:0005783 — located in — endoplasmic reticulum
- GO:0009658 — acts upstream of or within — chloroplast organization
- GO:0010274 — involved in — hydrotropism
- GO:0016020 — located in — membrane
- GO:0005737 — located in — cytoplasm
- miz1 — Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.
Functional Keywords
Literature and News
- Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis. DOI: 10.1104/pp.010207 ; PMID: 12481096
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- CONSTITUTIVELY PHOTOMORPHOGENIC1 is required for the UV-B response in Arabidopsis. DOI: 10.1105/tpc.105.040097 ; PMID: 16829591
- Arabidopsis SHORT INTEGUMENTS 2 is a mitochondrial DAR GTPase. DOI: 10.1534/genetics.106.060657 ; PMID: 16849600
- A gene essential for hydrotropism in roots. DOI: 10.1073/pnas.0609929104 ; PMID: 17360591
- GNOM-mediated vesicular trafficking plays an essential role in hydrotropism of Arabidopsis roots. DOI: 10.1104/pp.108.131003 ; PMID: 19052151
- Hormonal regulation of lateral root development in Arabidopsis modulated by MIZ1 and requirement of GNOM activity for MIZ1 function. DOI: 10.1104/pp.111.186270 ; PMID: 21940997
- MIZ1, an essential protein for root hydrotropism, is associated with the cytoplasmic face of the endoplasmic reticulum membrane in Arabidopsis root cells. DOI: 10.1016/j.febslet.2012.01.008 ; PMID: 22285304
- Light and abscisic acid signalling are integrated by MIZ1 gene expression and regulate hydrotropic response in roots of Arabidopsis thaliana. DOI: 10.1111/j.1365-3040.2012.02493.x ; PMID: 22321255
- Plastids are major regulators of light signaling in Arabidopsis. DOI: 10.1104/pp.112.193599 ; PMID: 22383539
- Overexpression of MIZU-KUSSEI1 enhances the root hydrotropic response by retaining cell viability under hydrostimulated conditions in Arabidopsis thaliana. DOI: 10.1093/pcp/pcs129 ; PMID: 23012350
- Molecular mechanisms of hydrotropism in seedling roots of Arabidopsis thaliana (Brassicaceae). DOI: 10.3732/ajb.1200419 ; PMID: 23263156
- Root hydrotropism: an update. DOI: 10.3732/ajb.1200306 ; PMID: 23258371
- MIZ1-regulated hydrotropism functions in the growth and survival of Arabidopsis thaliana under natural conditions. DOI: 10.1093/aob/mct098 ; PMID: 23658369
- Comparative Analysis of Arabidopsis Ecotypes Reveals a Role for Brassinosteroids in Root Hydrotropism. DOI: 10.1104/pp.17.01563 ; PMID: 29439211
- Hydrotropism: how roots search for water. DOI: 10.1093/jxb/ery034 ; PMID: 29529239
- MIZ1 regulates ECA1 to generate a slow, long-distance phloem-transmitted Ca(2+) signal essential for root water tracking in Arabidopsis. DOI: 10.1073/pnas.1804130115 ; PMID: 30012618
- Plasma Membrane-Associated Ca2+-Binding Protein PCaP1 is Involved in Root Hydrotropism of Arabidopsis thaliana. DOI: 10.1093/pcp/pcz042 ; PMID: 30828737
- Asymmetric distribution of cytokinins determines root hydrotropism in Arabidopsis thaliana. DOI: 10.1038/s41422-019-0239-3 ; PMID: 31601978
- Comparative analysis reveals gravity is involved in the MIZ1-regulated root hydrotropism. DOI: 10.1093/jxb/eraa409 ; PMID: 32905588
- MIZU-KUSSEI1 (MIZ1) and GNOM/MIZ2 control not only positive hydrotropism but also phototropism in Arabidopsis roots. DOI: 10.1093/jxb/erad193 ; PMID: 37220914
Gene Resources
- UniProt: A0A178VY97
- EMBL: CACRSJ010000105, LR881467, LUHQ01000002
- AlphaFoldDB: A0A178VY97
- EnsemblPlants: AT2G41660.1
- Gramene: AT2G41660.1
- KEGG: ath:AT2G41660
- Orthologous matrix: LFHEPAW
- ExpressionAtlas: AT2G41660
- InterPro: IPR006460
- PANTHER: PTHR31696, PTHR31696:SF71
Homologs
- Actinidia chinensis Achn166681, Achn021921
- Daucus carota DCAR_006602
- Fragaria vesca mrna26188.1-v1.0-hybrid
- Oryza sativa OsMIZ1
- Vitis vinifera GSVIVT01009566001
Sequences
cDNA Sequence
- >AT2G41660.1
CAACTGCATATGGTATATATATATGCCTAATTAATAATTTTTGTCTCCAAAAATGTACTTTATAAAATAAGCTAATGAAAACATATATTGCAAAAGATAATCAATACACATGCGTATGGATCCAGGATGTGCGTATTGGTAACAAGTAATATACTGTACTAAATTACTAATACTTATATTGTTAAACTAACTCTATGTTTTCTAGCTGATAATGTTATCCTTAATAAACTAACAATATATGTTTAATTTTATGGGGGCCTCCCAAATGATAAGCAATAAATATTGATGCAAAATGTGTATAAATACACACACAAATCGGCCACACCTCTTGAACACTCATCATCACTTTGGTCGGCCGCTTTCTTCCTTCCTTCCTCCTCAAATAATCTACACATATATAACATCCCTCTTAGTTTCTCTGTGGATCCATTGAGACATATATCATAAGTAACAATGGTGCCATACCAAGAACTCACTCTTCAGAGAAGCTTCAGCTACAACTCAAGAAAGATCAATCCAGTGACTTCTCCGGCGCGTAGCTCACACGTTCGTTCTCCTTCTTCCTCCGCCTTAATCCCAAGCATACCTGAGCACGAACTCTTCCTCGTTCCTTGCCGGAGATGCTCCTATGTCCCTCTCTCCTCCTCATCGTCGGCCTCTCACAATATCGGGAAATTTCACTTGAAGTTTTCTTTGCTCTTGCGTTCTTTCATCAACATCATTAACATCCCCGCTTGCAAAATGCTCTCTCTTCCCTCTCCGCCGTCTTCTTCTTCCAGCGTCTCTAACCAACTGATCTCACTCGTTACCGGTGGATCCTCTTCTCTCGGGAGAAGAGTCACCGGGACTCTGTACGGACACAAAAGAGGCCACGTCACGTTTTCGGTCCAGTACAACCAAAGATCCGACCCGGTCTTGCTCCTCGACCTGGCCATGTCAACGGCAACTCTCGTCAAAGAGATGTCGTCGGGGCTCGTCAGGATCGCGTTGGAGTGCGAGAAGCGTCATCGATCAGGTACGAAGCTTTTCCAAGAGCCCAAATGGACGATGTACTGCAACGGGAGGAAGTGCGGCTACGCTGTGTCACGTGGCGGCGCGTGTACTGATACAGATTGGCGCGTGTTGAACACGGTATCTAGGGTTACTGTTGGAGCCGGAGTTATTCCGACGCCGAAAACTATTGATGACGTGTCCGGTGTTGGTAGTGGAACGGAGCTTGGTGAGTTGTTGTATATGAGAGGCAAATTTGAACGAGTCGTTGGGAGCCGTGACTCGGAGGCGTTTTACATGATGAACCCGGACAAAAACGGAGGTCCAGAACTCAGTATTTTTCTTCTTAGAATATAATAAAGAATAAAATGGTTTTTAAAGAGAATTTGACTTCTTAAAAGTTTGAAAATGTCTTTAAATGACGTATTATTATGTATATGTAATATGATTGCAATGTTGTGTCATGAGATATATGTAAGCGATATTGATATGAAAGAAAGAGAGAGGGGCCTAGAGTATGATAAGGTTTTGTTTTTCTAGTTGTTTATTTGATGTGTGGTATTTTTGTATCTTTGTTATTGATCAATAAGAAGAAAAGAAGGATTTGATTATTATTAGTTTGTGGTTGCTTATATGCAAGGCATGAAGATCCCCACATGGTCCGTCATGATTAATGCCAAATTTAAGATTCTTGTTGTCTTTTATTATAATCTCTGTTTAATTTG
CDS Sequence
- >AT2G41660.1
ATGGTGCCATACCAAGAACTCACTCTTCAGAGAAGCTTCAGCTACAACTCAAGAAAGATCAATCCAGTGACTTCTCCGGCGCGTAGCTCACACGTTCGTTCTCCTTCTTCCTCCGCCTTAATCCCAAGCATACCTGAGCACGAACTCTTCCTCGTTCCTTGCCGGAGATGCTCCTATGTCCCTCTCTCCTCCTCATCGTCGGCCTCTCACAATATCGGGAAATTTCACTTGAAGTTTTCTTTGCTCTTGCGTTCTTTCATCAACATCATTAACATCCCCGCTTGCAAAATGCTCTCTCTTCCCTCTCCGCCGTCTTCTTCTTCCAGCGTCTCTAACCAACTGATCTCACTCGTTACCGGTGGATCCTCTTCTCTCGGGAGAAGAGTCACCGGGACTCTGTACGGACACAAAAGAGGCCACGTCACGTTTTCGGTCCAGTACAACCAAAGATCCGACCCGGTCTTGCTCCTCGACCTGGCCATGTCAACGGCAACTCTCGTCAAAGAGATGTCGTCGGGGCTCGTCAGGATCGCGTTGGAGTGCGAGAAGCGTCATCGATCAGGTACGAAGCTTTTCCAAGAGCCCAAATGGACGATGTACTGCAACGGGAGGAAGTGCGGCTACGCTGTGTCACGTGGCGGCGCGTGTACTGATACAGATTGGCGCGTGTTGAACACGGTATCTAGGGTTACTGTTGGAGCCGGAGTTATTCCGACGCCGAAAACTATTGATGACGTGTCCGGTGTTGGTAGTGGAACGGAGCTTGGTGAGTTGTTGTATATGAGAGGCAAATTTGAACGAGTCGTTGGGAGCCGTGACTCGGAGGCGTTTTACATGATGAACCCGGACAAAAACGGAGGTCCAGAACTCAGTATTTTTCTTCTTAGAATATAA
Protein Sequence
- >AT2G41660.1
MVPYQELTLQRSFSYNSRKINPVTSPARSSHVRSPSSSALIPSIPEHELFLVPCRRCSYVPLSSSSSASHNIGKFHLKFSLLLRSFINIINIPACKMLSLPSPPSSSSSVSNQLISLVTGGSSSLGRRVTGTLYGHKRGHVTFSVQYNQRSDPVLLLDLAMSTATLVKEMSSGLVRIALECEKRHRSGTKLFQEPKWTMYCNGRKCGYAVSRGGACTDTDWRVLNTVSRVTVGAGVIPTPKTIDDVSGVGSGTELGELLYMRGKFERVVGSRDSEAFYMMNPDKNGGPELSIFLLRI