Gene Details:

• Gene ID: AT2G41540
• Gene Symbol: GPDHC1
• Gene Name:
• Description: 6-phosphogluconate dehydrogenase family protein;(source:Araport11)
• TAIR Accession: locus:2062734
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT2G41540.1     AT2G41540.2     AT2G41540.3     AT2G41540.4

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0009001  — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)

Gene Ontology:

• GO:0046168  — involved in — glycerol-3-phosphate catabolic process
• GO:0006116  — involved in — NADH oxidation
• GO:0006072  — involved in — glycerol-3-phosphate metabolic process
• GO:0047952  — enables — glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
• GO:0005737  — located in — cytoplasm
• GO:0009331  — part of — glycerol-3-phosphate dehydrogenase complex
• GO:0005829  — located in — cytosol
• GO:0005829  — is active in — cytosol
• GO:0051287  — enables — NAD binding
• GO:0005975  — involved in — carbohydrate metabolic process

Germplasm Phenotype:

• gpdhc1-1  — Increased levels of malate in mutant (close to twice that in wildtype). Significant decrease in citrate levels and oxaloacetate.
• gpdhc1-1  — Lower germination rates when grown on plates containing ABA and salt.
• gpdhc1-1  — No aberrant phenotype when grown under normal conditions; except a slightly earlier flowering initiation.
• gpdhc1-2  — Increased levels of malate in mutant (close to twice that in wildtype). Significant decrease in citrate levels and oxaloacetate.
• gpdhc1-2  — Lower germination rates when grown on plates containing ABA and salt.
• gpdhc1-2  — No aberrant phenotype when grown under normal conditions; except a slightly earlier flowering initiation.

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen ,  fruit ,  root ,  vascular leaf ,  flower

Literature:

• Arabidopsis genes involved in acyl lipid metabolism. A 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a web-based database.   DOI:  10.1104/pp.103.022988 ;  PMID:  12805597
• Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant.   DOI:  10.1105/tpc.019000 ;  PMID:  14973164
• WIN1, a transcriptional activator of epidermal wax accumulation in Arabidopsis.   DOI:  10.1073/pnas.0305574101 ;  PMID:  15070782
• Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis.   DOI:  10.1104/pp.103.034736 ;  PMID:  15047898
• Cuticular lipid composition, surface structure, and gene expression in Arabidopsis stem epidermis.   DOI:  10.1104/pp.105.070805 ;  PMID:  16299169
• Involvement of a glycerol-3-phosphate dehydrogenase in modulating the NADH/NAD+ ratio provides evidence of a mitochondrial glycerol-3-phosphate shuttle in Arabidopsis.   DOI:  10.1105/tpc.105.039750 ;  PMID:  16415206
• The transcription factor WIN1/SHN1 regulates Cutin biosynthesis in Arabidopsis thaliana.   DOI:  10.1105/tpc.106.047076 ;  PMID:  17449808
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Acyl-lipid metabolism.   DOI:  10.1199/tab.0161 ;  PMID:  23505340
• Glycerol affects root development through regulation of multiple pathways in Arabidopsis.   DOI:  10.1371/journal.pone.0086269 ;  PMID:  24465999
• SUGAR-DEPENDENT6 encodes a mitochondrial flavin adenine dinucleotide-dependent glycerol-3-p dehydrogenase, which is required for glycerol catabolism and post germinative seedling growth in Arabidopsis.   DOI:  10.1104/pp.108.123703 ;  PMID:  18599644

Sequences: