Information report for AT2G40880
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
Literature and News
- Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. DOI: 10.1105/tpc.13.1.61 ; PMID: 11158529
- Classification of genes differentially expressed during water-deficit stress in Arabidopsis thaliana: an analysis using microarray and differential expression data. DOI: 10.1093/aob/mcf104 ; PMID: 12102506
- Transcriptome analysis of sulfur depletion in Arabidopsis thaliana: interlacing of biosynthetic pathways provides response specificity. DOI: 10.1046/j.1365-313x.2003.01657.x ; PMID: 12609038
- AtCYS1, a cystatin from Arabidopsis thaliana, suppresses hypersensitive cell death. DOI: 10.1046/j.1432-1033.2003.03630.x ; PMID: 12787025
- Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. DOI: 10.1104/pp.104.039370 ; PMID: 15235117
- The fast and transient transcriptional network of gravity and mechanical stimulation in the Arabidopsis root apex. DOI: 10.1104/pp.104.044594 ; PMID: 15347791
- Comparison of gene expression in segregating families identifies genes and genomic regions involved in a novel adaptation, zinc hyperaccumulation. DOI: 10.1111/j.1365-294X.2006.02981.x ; PMID: 16911220
- Two cysteine proteinase inhibitors from Arabidopsis thaliana, AtCYSa and AtCYSb, increasing the salt, drought, oxidation and cold tolerance. DOI: 10.1007/s11103-008-9357-x ; PMID: 18523728
- A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: confirmed actors and newcomers. DOI: 10.1186/1471-2229-8-94 ; PMID: 18796151
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Nitrogen remobilization during leaf senescence: lessons from Arabidopsis to crops. DOI: 10.1093/jxb/erw365 ; PMID: 27707774
- Protease activity and phytocystatin expression in Arabidopsis thaliana upon Heterodera schachtii infection. DOI: 10.1016/j.plaphy.2016.10.021 ; PMID: 27816823
- Transcriptome analysis of sulfur depletion in Arabidopsis thaliana: interlacing of biosynthetic pathways provides response specificity. DOI: 10.1046/j.1365-313x.2003.01657.x ; PMID: 12609038
- Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. DOI: 10.1104/pp.104.039370 ; PMID: 15235117
- Comparison of gene expression in segregating families identifies genes and genomic regions involved in a novel adaptation, zinc hyperaccumulation. DOI: 10.1111/j.1365-294X.2006.02981.x ; PMID: 16911220
Gene Resources
- UniProt: A0A178VXG7
- EMBL: CACRSJ010000105, CACSHJ010000088, LR881467
- AlphaFoldDB: A0A178VXG7
- EnsemblPlants: AT2G40880.1
- Gramene: AT2G40880.1
- KEGG: ath:AT2G40880
- Orthologous matrix: WHRICFR
- ExpressionAtlas: AT2G40880
- InterPro: IPR000010, IPR018073, IPR027214
- PANTHER: PTHR11413, PTHR11413:SF107
- SUPFAM: SSF54403
- PROSITE: PS00287
- Gene3D: 3.10.450.10
- OrthoDB: A0A178VXG7
- SWISS-MODEL: A0A178VXG7
- Conserved Domain Database: cd00042
Homologs
- Rosa chinensis RchiOBHm_Chr5g0040441, RchiOBHm_Chr4g0409301, RchiOBHm_Chr5g0001251
Sequences
cDNA Sequence
- >AT2G40880.1
GTAACGTAAAAGATACCGACATGGCCAAAACCTACGAATCTGAAATTTGAAGAAGCATAAGTTTGTCTATTAAAGATGGAATCAAAGACGTTCTGGATCGTTACTCTTCTTCTCTGTGGAACAATTCAATTAGCGATTTGCAGATCAGAAGAGAAAAGCACAGAGAAGACGATGATGCTAGGAGGCGTTCATGATCTCCGAGGAAATCAGAACAGTGGAGAGATCGAGAGTCTCGCTCGATTTGCCATTCAAGAACATAACAAACAACAGAACAAAATTCTTGAGTTCAAGAAGATTGTCAAAGCAAGGGAGCAGGTAGTTGCAGGAACGATGTACCACTTAACCCTAGAAGCAAAAGAAGGTGATCAGACTAAGAATTTTGAAGCCAAAGTGTGGGTGAAGCCATGGATGAACTTCAAACAGTTGCAGGAGTTCAAGGAATCATCTTCTTGAATTTCACTTGTTCAAGTTAATGATTACAAATGCTCTGAGAGTAATTAATTATATGTGTGTAAAATACTTTGCTATATGCGAAACCTAAAAAGTTAATGTAATCAAGAAACTTGTTCTTATGTCCTGCAAATATCTTTGTATGTTTGTTTCCTGTTTATTCTTATGTTTCAAGTTACAACATTGCACTGATTG
CDS Sequence
- >AT2G40880.1
ATGGAATCAAAGACGTTCTGGATCGTTACTCTTCTTCTCTGTGGAACAATTCAATTAGCGATTTGCAGATCAGAAGAGAAAAGCACAGAGAAGACGATGATGCTAGGAGGCGTTCATGATCTCCGAGGAAATCAGAACAGTGGAGAGATCGAGAGTCTCGCTCGATTTGCCATTCAAGAACATAACAAACAACAGAACAAAATTCTTGAGTTCAAGAAGATTGTCAAAGCAAGGGAGCAGGTAGTTGCAGGAACGATGTACCACTTAACCCTAGAAGCAAAAGAAGGTGATCAGACTAAGAATTTTGAAGCCAAAGTGTGGGTGAAGCCATGGATGAACTTCAAACAGTTGCAGGAGTTCAAGGAATCATCTTCTTGA
Protein Sequence
- >AT2G40880.1
MESKTFWIVTLLLCGTIQLAICRSEEKSTEKTMMLGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLEAKEGDQTKNFEAKVWVKPWMNFKQLQEFKESSS