Information report for AT2G40620
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , pollen tube cell , pollen
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- bZIP transcription factors in Arabidopsis. DOI: 10.1016/s1360-1385(01)02223-3 ; PMID: 11906833
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs. DOI: 10.1093/nar/gkh653 ; PMID: 15226410
- Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks. DOI: 10.1093/molbev/msl022 ; PMID: 16731568
- An early response regulatory cluster induced by low temperature and hydrogen peroxide in seedlings of chilling-tolerant japonica rice. DOI: 10.1186/1471-2164-8-175 ; PMID: 17577400
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Analysis of functions of VIP1 and its close homologs in osmosensory responses of Arabidopsis thaliana. DOI: 10.1371/journal.pone.0103930 ; PMID: 25093810
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- A novel family of plant nuclear envelope-associated proteins. DOI: 10.1093/jxb/erw332 ; PMID: 27630107
- Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. DOI: 10.1016/j.devcel.2016.09.031 ; PMID: 27923776
- The G-Box Transcriptional Regulatory Code in Arabidopsis. DOI: 10.1104/pp.17.01086 ; PMID: 28864470
- Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. DOI: 10.1038/s41477-019-0378-z ; PMID: 30833711
- Transcriptional regulation of nitrogen-associated metabolism and growth. DOI: 10.1038/s41586-018-0656-3 ; PMID: 30356219
- Arabidopsis bZIP18 and bZIP52 Accumulate in Nuclei Following Heat Stress where They Regulate the Expression of a Similar Set of Genes. DOI: 10.3390/ijms22020530 ; PMID: 33430325
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- bZIP transcription factors in Arabidopsis. DOI: 10.1016/s1360-1385(01)02223-3 ; PMID: 11906833
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Gene Resources
- UniProt: A0A178VZR1
- EMBL: CACRSJ010000105, LR881467, LUHQ01000002
- AlphaFoldDB: A0A178VZR1
- EnsemblPlants: AT2G40620.1
- Gramene: AT2G40620.1
- KEGG: ath:AT2G40620
- Orthologous matrix: SEDDMLC
- ExpressionAtlas: AT2G40620
- InterPro: IPR004827, IPR044759, IPR046347
- PANTHER: PTHR13690, PTHR13690:SF103
- SUPFAM: SSF57959
- PROSITE: PS50217
- Gene3D: 1.20.5.170
- SWISS-MODEL: A0A178VZR1
- Conserved Domain Database: cd14703
Homologs
- Brassica napus GSBRNA2T00132841001, GSBRNA2T00123280001, GSBRNA2T00155098001, GSBRNA2T00024327001
- Brassica oleracea XP_013634112.1, XP_013636912.1
- Brassica rapa XP_009142704.1, XP_009141921.1
Sequences
cDNA Sequence
- >AT2G40620.1
AATTTATATGTTTCTATGTATATGTGAATAAGATCAAATGTAAAAAGAGAAGTATATGATTTGTGTGATCAAAAGACAGCTTGAAAGTTTGGATAGACGAAAACAAGGGTTAAAAAGATAAAAGATCTCACAAACGACGCTGTTTTGGAGCCTGTTCCGTGTTTTTTTGTGGCCATCATCATCACCTTCGGACACAACGTGATATCTGAATCTCTCCCTCTCTCTCTCTCTCTCTTTCGCTGTCCGATTCCGACAGATAGACAGAGGGCGCGAAACAGAGAGAAAATAAGAAGAAGAAGGACGATCCAGATATGGAGGATCCTTCTAACCCACAACCAAACCAGAGCAATCTCTCGCAATGCCCGCCTTTAGCCACAGCTCCGACACCTGCGCCAGTTCGTGGTCCGTACCACCGGAGAGCACATTCGGAGGTCCAATTCCGTCTCCCTGAAGATCTGGATCTCTCTGAACCATTCGGAGGATTCGATGAGCTTGGATCCGAAGATGATCTCTTTTGCTCATACATGGACATTGAGAAACTTGGATCCGGATCCGGATCCGCATCCGATTCGGCTGGTCCTTCTGCTCCTAGGTCTGATAACCCGTTTTCCGCTGAGAATGGAGGTGCGGAGGCTGGGAATTCGAGACCTCGACACAGGCATAGCCTCTCCGTTGATGGCTCTTCGACTTTGGAGTCAATTGAGGCTAAGAAAGCTATGGCTCCTGATAAGCTCGCTGAGCTTTGGGTCGTCGACCCTAAAAGAGCTAAAAGGATAATTGCTAATCGACAGTCTGCTGCTCGTTCGAAAGAGAGGAAGGCTCGGTATATCTTGGAGCTCGAGAGGAAAGTTCAGACCTTGCAAACTGAAGCTACTACCCTTTCAGCACAGTTGTCTTTGTTCCAGAGAGACACAACTGGTTTGTCATCTGAGAATACAGAGCTCAAGCTTCGTTTACAGGTCATGGAACAACAAGCTAAGTTGCGAGATGCACTGAACGAGCAACTGAAAAAGGAAGTTGAGAGGCTGAAATTCGCCACGGGAGAAGTCTCACCCGCGGATGCTTATAACCTCGGAATGGCACACATGCAATATCAGCAACAACCACAACAATCCTTCTTTCAACATCATCATCAGCAACAAACCGATGCTCAAAACCTGCAACAAATGACTCATCAGTTTCATCTCTTCCAGCCTAACAACAACCAGAACCAATCTTCTCGCACAAACCCTCCCACCGCTCATCAGCTTATGCATCACGCTACTTCTAATGCCCCGGCTCAATCTCATTCCTATTCAGAGGCAATGCATGAAGACCATCTTGGCCGGTTACAGGGGCTTGACATTAGCAGCTGTGGCAGAGGCTCAAACTTTGGTAGGTCTGACACCGTCAGTGAAAGCAGCAGCACTATGTGAGGCTGCCTTTCCCAGATTCCCCTTTGTCGATAAACCTATTCTTTCGCCCTCCCTTGAAATCTTTAGCTAAAAAGTAACATCTTCGTGACAGTCGGATTCATTTTTTATTCTGTAAAACTGGTTTTTTGGGGGGTTTTGGGGTTTCAACTTTAGAGACCACAGTTGTTTTAACTTGTCTGATTTCTCATTTCCTGATTCATCTTGTTCTCCTGGGGAGCTACTGAATTATAAACAGATCATATTTCTGTTTCTTTATGTTGTCATGATTCCCTAGTTGCTTTCGTCAATCATCCCTATGATAGATGGTTGAATTTGGATTTGGCTTTGGCTTGAACCAGATCAGAAAGTGTTTTGTTTTGCAGGTCTCCTAGCTACATCACTTTGTG
CDS Sequence
- >AT2G40620.1
ATGGAGGATCCTTCTAACCCACAACCAAACCAGAGCAATCTCTCGCAATGCCCGCCTTTAGCCACAGCTCCGACACCTGCGCCAGTTCGTGGTCCGTACCACCGGAGAGCACATTCGGAGGTCCAATTCCGTCTCCCTGAAGATCTGGATCTCTCTGAACCATTCGGAGGATTCGATGAGCTTGGATCCGAAGATGATCTCTTTTGCTCATACATGGACATTGAGAAACTTGGATCCGGATCCGGATCCGCATCCGATTCGGCTGGTCCTTCTGCTCCTAGGTCTGATAACCCGTTTTCCGCTGAGAATGGAGGTGCGGAGGCTGGGAATTCGAGACCTCGACACAGGCATAGCCTCTCCGTTGATGGCTCTTCGACTTTGGAGTCAATTGAGGCTAAGAAAGCTATGGCTCCTGATAAGCTCGCTGAGCTTTGGGTCGTCGACCCTAAAAGAGCTAAAAGGATAATTGCTAATCGACAGTCTGCTGCTCGTTCGAAAGAGAGGAAGGCTCGGTATATCTTGGAGCTCGAGAGGAAAGTTCAGACCTTGCAAACTGAAGCTACTACCCTTTCAGCACAGTTGTCTTTGTTCCAGAGAGACACAACTGGTTTGTCATCTGAGAATACAGAGCTCAAGCTTCGTTTACAGGTCATGGAACAACAAGCTAAGTTGCGAGATGCACTGAACGAGCAACTGAAAAAGGAAGTTGAGAGGCTGAAATTCGCCACGGGAGAAGTCTCACCCGCGGATGCTTATAACCTCGGAATGGCACACATGCAATATCAGCAACAACCACAACAATCCTTCTTTCAACATCATCATCAGCAACAAACCGATGCTCAAAACCTGCAACAAATGACTCATCAGTTTCATCTCTTCCAGCCTAACAACAACCAGAACCAATCTTCTCGCACAAACCCTCCCACCGCTCATCAGCTTATGCATCACGCTACTTCTAATGCCCCGGCTCAATCTCATTCCTATTCAGAGGCAATGCATGAAGACCATCTTGGCCGGTTACAGGGGCTTGACATTAGCAGCTGTGGCAGAGGCTCAAACTTTGGTAGGTCTGACACCGTCAGTGAAAGCAGCAGCACTATGTGA
Protein Sequence
- >AT2G40620.1
MEDPSNPQPNQSNLSQCPPLATAPTPAPVRGPYHRRAHSEVQFRLPEDLDLSEPFGGFDELGSEDDLFCSYMDIEKLGSGSGSASDSAGPSAPRSDNPFSAENGGAEAGNSRPRHRHSLSVDGSSTLESIEAKKAMAPDKLAELWVVDPKRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGLSSENTELKLRLQVMEQQAKLRDALNEQLKKEVERLKFATGEVSPADAYNLGMAHMQYQQQPQQSFFQHHHQQQTDAQNLQQMTHQFHLFQPNNNQNQSSRTNPPTAHQLMHHATSNAPAQSHSYSEAMHEDHLGRLQGLDISSCGRGSNFGRSDTVSESSSTM