Information report for AT2G40080
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- CS2107356 — long hypocotyl, Early flowering
- CS2107357 — long hypocotyle, Earliy flowering
- CS68093 — Reduced sensitivity to continuous red light during de-etiolation. Longer hypocotyls when grown in continuous red light for 4 days, and reduced expansion of cotyledon area and slightly elongated petioles compared to wild-type.
- CS9879 — early flowering in non-inductive photoperiods
- SAIL_424_B07 — Very early flowering under short days.Slight early flowering under long days.
- elf4-101 — No visible phenotype under constant far-red light conditions.
- elf4-101 — Reduced sensitivity to constant red light during de-etiolation. Have longer hypocotyls than Col siblings when grown in continuous red light for 4 days. Reduced expansion of cotyledon area, slightly elongated petioles.
- elf4-101 — Under FRc conditions, the length mutant hypocotyls is similar to that of wild-type plants. Under Rc conditions, the hypocotyl length is increased compared to wild type and the cotyledon area is smaller.
- elf4-102 — No visible phenotype under constant far-red light conditions.
- elf4-102 — Reduced sensitivity to constant red light during de-etiolation. Have longer hypocotyls than Col siblings when grown in continuous red light for 4 days. Reduced expansion of cotyledon area, slightly elongated petioles.
Functional Keywords
Literature and News
- The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana. DOI: 10.1038/nature00954 ; PMID: 12214234
- HUA2 is required for the expression of floral repressors in Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2004.02300.x ; PMID: 15659097
- Conservation and divergence of circadian clock operation in a stress-inducible Crassulacean acid metabolism species reveals clock compensation against stress. DOI: 10.1104/pp.104.054577 ; PMID: 15734916
- EARLY FLOWERING 4 functions in phytochrome B-regulated seedling de-etiolation. DOI: 10.1104/pp.103.030007 ; PMID: 14605220
- Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. DOI: 10.1104/pp.105.061408 ; PMID: 15908595
- ELF4 is a phytochrome-regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY. DOI: 10.1111/j.1365-313X.2005.02531.x ; PMID: 16212608
- Gene profiling of the red light signalling pathways in roots. DOI: 10.1093/jxb/erl086 ; PMID: 16908503
- Functional profiling reveals that only a small number of phytochrome-regulated early-response genes in Arabidopsis are necessary for optimal deetiolation. DOI: 10.1105/tpc.106.042200 ; PMID: 16891401
- Comparative overviews of clock-associated genes of Arabidopsis thaliana and Oryza sativa. DOI: 10.1093/pcp/pcl043 ; PMID: 17132630
- ELF4 is required for oscillatory properties of the circadian clock. DOI: 10.1104/pp.107.096206 ; PMID: 17384164
- Pea LATE BLOOMER1 is a GIGANTEA ortholog with roles in photoperiodic flowering, deetiolation, and transcriptional regulation of circadian clock gene homologs. DOI: 10.1104/pp.107.096818 ; PMID: 17468223
- Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering. DOI: 10.1104/pp.108.124917 ; PMID: 18676661
- Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis. DOI: 10.1104/pp.108.127639 ; PMID: 18799658
- DIE NEUTRALIS and LATE BLOOMER 1 contribute to regulation of the pea circadian clock. DOI: 10.1105/tpc.109.067223 ; PMID: 19843842
- Karrikins enhance light responses during germination and seedling development in Arabidopsis thaliana. DOI: 10.1073/pnas.0911635107 ; PMID: 20351290
- Integrating ELF4 into the circadian system through combined structural and functional studies. DOI: 10.2976/1.3218766 ; PMID: 20357892
- Light inputs shape the Arabidopsis circadian system. DOI: 10.1111/j.1365-313X.2011.04505.x ; PMID: 21255161
- Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. DOI: 10.1038/ncb2219 ; PMID: 21499259
- The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. DOI: 10.1038/nature10182 ; PMID: 21753751
- Light at night resynchronizes the evening-phased rhythms of TOC1 and ELF4 in Phaseolus vulgaris. DOI: 10.1016/j.plantsci.2011.12.014 ; PMID: 22284718
- GIGANTEA and EARLY FLOWERING 4 in Arabidopsis exhibit differential phase-specific genetic influences over a diurnal cycle. DOI: 10.1093/mp/sss005 ; PMID: 22328721
- EARLY FLOWERING4 recruitment of EARLY FLOWERING3 in the nucleus sustains the Arabidopsis circadian clock. DOI: 10.1105/tpc.111.093807 ; PMID: 22327739
- ELF3 recruitment to the PRR9 promoter requires other Evening Complex members in the Arabidopsis circadian clock. DOI: 10.4161/psb.18766 ; PMID: 22307044
- ELF4 regulates GIGANTEA chromatin access through subnuclear sequestration. DOI: 10.1016/j.celrep.2013.02.021 ; PMID: 23523352
- Ambient temperature signal feeds into the circadian clock transcriptional circuitry through the EC night-time repressor in Arabidopsis thaliana. DOI: 10.1093/pcp/pcu030 ; PMID: 24500967
- Light and the circadian clock mediate time-specific changes in sensitivity to UV-B stress under light/dark cycles. DOI: 10.1093/jxb/eru339 ; PMID: 25147271
- ELF3-PIF4 interaction regulates plant growth independently of the Evening Complex. DOI: 10.1016/j.cub.2014.10.070 ; PMID: 25557667
- Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways. DOI: 10.1074/mcp.M114.047183 ; PMID: 26091701
- Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure. DOI: 10.1098/rsob.150042 ; PMID: 26468131
- Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry. DOI: 10.1074/mcp.M115.054064 ; PMID: 26545401
- FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. DOI: 10.3389/fpls.2016.00175 ; PMID: 26941752
- Data on the identification of protein interactors with the Evening Complex and PCH1 in Arabidopsis using tandem affinity purification and mass spectrometry (TAP-MS). DOI: 10.1016/j.dib.2016.05.014 ; PMID: 27274533
- Variability in a Short Tandem Repeat Mediates Complex Epistatic Interactions in Arabidopsis thaliana. DOI: 10.1534/genetics.116.193359 ; PMID: 27866166
- COR27 and COR28 encode nighttime repressors integrating Arabidopsis circadian clock and cold response. DOI: 10.1111/jipb.12512 ; PMID: 27990760
- Functional Characterization of a Putative Glycine max ELF4 in Transgenic Arabidopsis and Its Role during Flowering Control. DOI: 10.3389/fpls.2017.00618 ; PMID: 28473844
- The evening complex coordinates environmental and endogenous signals in Arabidopsis. DOI: 10.1038/nplants.2017.87 ; PMID: 28650433
- Circadian control of ORE1 by PRR9 positively regulates leaf senescence in Arabidopsis. DOI: 10.1073/pnas.1722407115 ; PMID: 30065116
- HOS15 Interacts with the Histone Deacetylase HDA9 and the Evening Complex to Epigenetically Regulate the Floral Activator GIGANTEA. DOI: 10.1105/tpc.18.00721 ; PMID: 30606777
- Response of the Circadian Clock and Diel Starch Turnover to One Day of Low Light or Low CO(2). DOI: 10.1104/pp.18.01418 ; PMID: 30670603
- Arabidopsis JMJD5/JMJ30 Acts Independently of LUX ARRHYTHMO Within the Plant Circadian Clock to Enable Temperature Compensation. DOI: 10.3389/fpls.2019.00057 ; PMID: 30774641
- Arabidopsis ELF4-like proteins EFL1 and EFL3 influence flowering time. DOI: 10.1016/j.gene.2019.03.047 ; PMID: 30917931
- Luciferase-Based Screen for Post-translational Control Factors in the Regulation of the Pseudo-Response Regulator PRR7. DOI: 10.3389/fpls.2019.00667 ; PMID: 31191580
- Molecular mechanisms of Evening Complex activity in Arabidopsis. DOI: 10.1073/pnas.1920972117 ; PMID: 32165537
- The evening complex is central to the difference between the circadian clocks of Arabidopsis thaliana shoots and roots. DOI: 10.1111/ppl.13108 ; PMID: 32303120
- A mobile ELF4 delivers circadian temperature information from shoots to roots. DOI: 10.1038/s41477-020-0634-2 ; PMID: 32284549
- A prion-like domain in ELF3 functions as a thermosensor in Arabidopsis. DOI: 10.1038/s41586-020-2644-7 ; PMID: 32848244
- Subcellular Localization of GIGANTEA Regulates the Timing of Leaf Senescence and Flowering in Arabidopsis. DOI: 10.3389/fpls.2020.589707 ; PMID: 33329652
- Molecular and functional dissection of EARLY-FLOWERING 3 (ELF3) and ELF4 in Arabidopsis. DOI: 10.1016/j.plantsci.2020.110786 ; PMID: 33487361
- Phytochrome A elevates plant circadian-clock components to suppress shade avoidance in deep-canopy shade. DOI: 10.1073/pnas.2108176118 ; PMID: 34187900
- Firefly Luciferase Complementation-Based Analysis of Dynamic Protein-Protein Interactions Under Diurnal and Circadian Conditions in Arabidopsis. DOI: 10.1007/978-1-0716-1912-4_16 ; PMID: 34674178
- Cellular localization of Arabidopsis EARLY FLOWERING3 is responsive to light quality. DOI: 10.1093/plphys/kiac072 ; PMID: 35191492
- WHIRLY1 recruits the histone deacetylase HDA15 repressing leaf senescence and flowering in Arabidopsis. DOI: 10.1111/jipb.13272 ; PMID: 35510566
- Transcriptome Meta-Analysis Associated Targeting Hub Genes and Pathways of Drought and Salt Stress Responses in Cotton (Gossypium hirsutum): A Network Biology Approach. DOI: 10.3389/fpls.2022.818472 ; PMID: 35548277
- REVEILLE 7 inhibits the expression of the circadian clock gene EARLY FLOWERING 4 to fine-tune hypocotyl growth in response to warm temperatures. DOI: 10.1111/jipb.13284 ; PMID: 35603836
- A competition-attenuation mechanism modulates thermoresponsive growth at warm temperatures in plants. DOI: 10.1111/nph.18442 ; PMID: 36028981
- Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis. DOI: 10.1104/pp.108.127639 ; PMID: 18799658
Gene Resources
- UniProt: A0A5S9X658
- EMBL: CACRSJ010000105, CACSHJ010000088
- AlphaFoldDB: A0A5S9X658
- EnsemblPlants: AT2G40080.1
- Gramene: AT2G40080.1
- KEGG: ath:AT2G40080
- Orthologous matrix: VCQHRSK
- ExpressionAtlas: AT2G40080
- InterPro: IPR009741, IPR040462
- PANTHER: PTHR33469, PTHR33469:SF5
- OrthoDB: A0A5S9X658
- SWISS-MODEL: A0A5S9X658
Homologs
- Brassica oleracea Bo4g188760, Bo4g025580, Bo3g034670, Bo4g025620
- Brassica rapa Bra017035, Bra000165, Bra004991
- Cucumis sativus CsGy5G007930
- Gossypium hirsutum Gohir.A10G236100, Gohir.A06G163700, Gohir.D06G169600
- Manihot esculenta MANES_07G129600
Sequences
cDNA Sequence
- >AT2G40080.1
TTACTATAAATATCTGATTTCTCTCGACTTTGACGAAAATCAAAAAGAGAGAAAAACACAATTAAAAATTATTATGAAGAGGAACGGCGAGACGAAACGGCGGAGGAACGTGGCGGAGGAGGCAGAGCAGGGAGAGGATCCGGCGATGTGGGAGAATCTTGACCGGAATTTCAGACAAGTGCAATCAGTTTTAGACAGAAACAGATCACTGATTCAACAAGTCAACGACAATCACCAATCGAGAATGGCTGATAACATGTCGAAGAACGTTGCTTTGATTCAAGAACTCAACGGAAACATTTCCAAGGTTGTTAACATGTATTCTGATCTCAATACTAGTTTCTCGTCGGGCTTTCACGGTGGGAAGAACGGTCACGATGGTGGTGGTGCTGCCGGAACTAGAGCTTAATGAACCGGAATCAAATTGTTTCTTCTTAGTTGGACCGGCCGGTTTGAGAATTTTGAATCTGTCCGGTTCAAGCTATGATATAAAGTAAATGTTTAGTTTTTGTATTGCAATGATGATTGTCGTTAGAATAATCCGTGGGAGCAAACCCATCTCTATTGGGGTTATTTTAGTTATGGTTTTGAGTCTTTTTCAATGTGTCTCTACTGCAATCTCTCTAATGATTATAATAATAATTGATACAGTATTAGATT
CDS Sequence
- >AT2G40080.1
ATGAAGAGGAACGGCGAGACGAAACGGCGGAGGAACGTGGCGGAGGAGGCAGAGCAGGGAGAGGATCCGGCGATGTGGGAGAATCTTGACCGGAATTTCAGACAAGTGCAATCAGTTTTAGACAGAAACAGATCACTGATTCAACAAGTCAACGACAATCACCAATCGAGAATGGCTGATAACATGTCGAAGAACGTTGCTTTGATTCAAGAACTCAACGGAAACATTTCCAAGGTTGTTAACATGTATTCTGATCTCAATACTAGTTTCTCGTCGGGCTTTCACGGTGGGAAGAACGGTCACGATGGTGGTGGTGCTGCCGGAACTAGAGCTTAA
Protein Sequence
- >AT2G40080.1
MKRNGETKRRRNVAEEAEQGEDPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVNMYSDLNTSFSSGFHGGKNGHDGGGAAGTRA