Information report for AT2G40060
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Functional Keywords
Literature and News
- Functional evidence for the identification of an Arabidopsis clathrin light chain polypeptide. DOI: 10.1016/s0014-5793(02)02439-0 ; PMID: 11943181
- Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. DOI: 10.1186/1471-2164-7-81 ; PMID: 16615871
- Dynamics of Arabidopsis dynamin-related protein 1C and a clathrin light chain at the plasma membrane. DOI: 10.1105/tpc.108.059428 ; PMID: 18502847
- Adaptin-like protein TPLATE and clathrin recruitment during plant somatic cytokinesis occurs via two distinct pathways. DOI: 10.1073/pnas.1017890108 ; PMID: 21187379
- Single-molecule analysis of PIP2;1 dynamics and partitioning reveals multiple modes of Arabidopsis plasma membrane aquaporin regulation. DOI: 10.1105/tpc.111.091454 ; PMID: 22010034
- A membrane microdomain-associated protein, Arabidopsis Flot1, is involved in a clathrin-independent endocytic pathway and is required for seedling development. DOI: 10.1105/tpc.112.095695 ; PMID: 22589463
- Clathrin light chains regulate clathrin-mediated trafficking, auxin signaling, and development in Arabidopsis. DOI: 10.1105/tpc.112.108373 ; PMID: 23424247
- The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants. DOI: 10.1016/j.cell.2014.01.039 ; PMID: 24529374
- Identification of Regulatory and Cargo Proteins of Endosomal and Secretory Pathways in Arabidopsis thaliana by Proteomic Dissection. DOI: 10.1074/mcp.M115.050286 ; PMID: 25900983
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Clathrin-Mediated Auxin Efflux and Maxima Regulate Hypocotyl Hook Formation and Light-Stimulated Hook Opening in Arabidopsis. DOI: 10.1016/j.molp.2015.09.018 ; PMID: 26458873
- Clathrin regulates blue light-triggered lateral auxin distribution and hypocotyl phototropism in Arabidopsis. DOI: 10.1111/pce.12854 ; PMID: 27770560
- A modified GFP facilitates counting membrane protein subunits by step-wise photobleaching in Arabidopsis. DOI: 10.1016/j.jplph.2017.03.009 ; PMID: 28380405
- A Functional Study of AUXILIN-LIKE1 and 2, Two Putative Clathrin Uncoating Factors in Arabidopsis. DOI: 10.1105/tpc.17.00785 ; PMID: 29511054
- The Inhibitor Endosidin 4 Targets SEC7 Domain-Type ARF GTPase Exchange Factors and Interferes with Subcellular Trafficking in Eukaryotes. DOI: 10.1105/tpc.18.00127 ; PMID: 30018156
- Enrichment of Phosphatidylinositol 4,5-Bisphosphate in the Extra-Invasive Hyphal Membrane Promotes Colletotrichum Infection of Arabidopsis thaliana. DOI: 10.1093/pcp/pcz058 ; PMID: 30989198
- Arabidopsis Flippases Cooperate with ARF GTPase Exchange Factors to Regulate the Trafficking and Polarity of PIN Auxin Transporters. DOI: 10.1105/tpc.19.00869 ; PMID: 32193204
- Non-steroidal Anti-inflammatory Drugs Target TWISTED DWARF1-Regulated Actin Dynamics and Auxin Transport-Mediated Plant Development. DOI: 10.1016/j.celrep.2020.108463 ; PMID: 33264621
- Mechanistic insights into an atypical interaction between ATG8 and SH3P2 in Arabidopsis thaliana. DOI: 10.1080/15548627.2021.1976965 ; PMID: 34657568
- Salicylic Acid Regulates Root Gravitropic Growth via Clathrin-Independent Endocytic Trafficking of PIN2 Auxin Transporter in Arabidopsis thaliana. DOI: 10.3390/ijms23169379 ; PMID: 36012641
- An emerging role of non-canonical conjugation of ATG8 proteins in plant response to heat stress. DOI: 10.1080/15548627.2023.2219161 ; PMID: 37246814
- Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. DOI: 10.1021/pr034025j ; PMID: 12938931
- Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. DOI: 10.1074/mcp.M600429-MCP200 ; PMID: 17317660
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178W0Q3
- EMBL: CACRSJ010000105, LR881467, LUHQ01000002
- AlphaFoldDB: A0A178W0Q3
- EnsemblPlants: AT2G40060.1
- Gramene: AT2G40060.1
- KEGG: ath:AT2G40060
- Orthologous matrix: CETNIAT
- ExpressionAtlas: AT2G40060
- InterPro: IPR000996
- PANTHER: PTHR10639, PTHR10639:SF38
- SWISS-MODEL: A0A178W0Q3
Homologs
- Lactuca sativa Lsat_1_v5_gn_9_17261, Lsat_1_v5_gn_2_39800
Sequences
cDNA Sequence
- >AT2G40060.1
AAGCCCATTAAGAAAAATGGAAATAAAAATAGTCACAAATCTCCGTTATTAATTTTTGCCATAAGCTTGAGAACACTTGAAAAGACAAGATTCGCGAGTTCTTCGTTCTGCCTTTTTTTTTTTTTTTGTGTGTTCGAGAGATGTCTGCCTTTGAAGACGATTCCTTCGTCATACTCAACGATGATGCGTCTGAGTCTGTTCCAGTCTCAGGCTCTTTTGACGCCACTGATTCTTTCTCAGCTTTCGACGGCTCACTCCAAGTCGAGGACTCCGTCGACGATGTTTTTGCAGCGCCGTCTTCTGACTACGGTGCTTACTCCAACGGTGACGGCATCTTCGGATCCAACGGGGATCACGACGGTCCTATCTTGCCACCACCGTCGGAGATGGAATCAGATGAGGGATTTGCTCTTAGAGAATGGAGAAGACAAAATGCAATTCAACTTGAGGAGAAGGAGAAGAGAGAAAAGGAATTGTTGAAGCAAATTATTGAGGAAGCTGATCAATACAAAGAAGAGTTTCATAAGAAGATTGAAGTAACTTGTGAAAACAACAAAGCAGCTAACAGAGAGAAGGAAAAGCTGTATCTGGAGAACCAAGAGAAGTTCTACGCGGAATCCAGCAAGAATTACTGGAAGGCAATAGCAGAGCTAGTTCCTAAAGAAGTTCCAACAATAGAGAAAAGGAGAGGAAAAAAAGAGCAACAAGATCCTAAGAAGCCAACAGTCTCTGTGATTCAAGGTCCAAAGCCCGGTAAGCCAACCGATCTAACAAGAATGAGACAAATATTGGTGAAGCTCAAACACAACCCACCTTCTCACCTGAAACTCACTTCTCAACCTCCATCGGAGGAGGCGGCTGCTCCTCCAAAGAATGTTCCCGAAACCAAGCCCACTGAGGCAGTTACTGCTGCTTAAAAACCTCCTTTGTTTTCTTATTCGTTGCTTACATCTGTGTGAATTCAGTCTTTGCATTTCATTATGTGTTATAAACAGCTGAGAGATTTTATGGTTCATGTGTGTTATTAACATAATTATGTCATATTGGAATGATAACTTTTTATGTTTTAGTCAGTTACCATTGAATAGTGGTTAATATCTCAAATCAATCGGTTAAAGGATCC
CDS Sequence
- >AT2G40060.1
ATGTCTGCCTTTGAAGACGATTCCTTCGTCATACTCAACGATGATGCGTCTGAGTCTGTTCCAGTCTCAGGCTCTTTTGACGCCACTGATTCTTTCTCAGCTTTCGACGGCTCACTCCAAGTCGAGGACTCCGTCGACGATGTTTTTGCAGCGCCGTCTTCTGACTACGGTGCTTACTCCAACGGTGACGGCATCTTCGGATCCAACGGGGATCACGACGGTCCTATCTTGCCACCACCGTCGGAGATGGAATCAGATGAGGGATTTGCTCTTAGAGAATGGAGAAGACAAAATGCAATTCAACTTGAGGAGAAGGAGAAGAGAGAAAAGGAATTGTTGAAGCAAATTATTGAGGAAGCTGATCAATACAAAGAAGAGTTTCATAAGAAGATTGAAGTAACTTGTGAAAACAACAAAGCAGCTAACAGAGAGAAGGAAAAGCTGTATCTGGAGAACCAAGAGAAGTTCTACGCGGAATCCAGCAAGAATTACTGGAAGGCAATAGCAGAGCTAGTTCCTAAAGAAGTTCCAACAATAGAGAAAAGGAGAGGAAAAAAAGAGCAACAAGATCCTAAGAAGCCAACAGTCTCTGTGATTCAAGGTCCAAAGCCCGGTAAGCCAACCGATCTAACAAGAATGAGACAAATATTGGTGAAGCTCAAACACAACCCACCTTCTCACCTGAAACTCACTTCTCAACCTCCATCGGAGGAGGCGGCTGCTCCTCCAAAGAATGTTCCCGAAACCAAGCCCACTGAGGCAGTTACTGCTGCTTAA
Protein Sequence
- >AT2G40060.1
MSAFEDDSFVILNDDASESVPVSGSFDATDSFSAFDGSLQVEDSVDDVFAAPSSDYGAYSNGDGIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQYKEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKAIAELVPKEVPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKLTSQPPSEEAAAPPKNVPETKPTEAVTAA