Information report for AT2G39990
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
Literature and News
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- The plant-specific database. Classification of Arabidopsis proteins based on their phylogenetic profile. DOI: 10.1104/pp.104.043687 ; PMID: 15326280
- High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. DOI: 10.1111/j.1365-313X.2004.02281.x ; PMID: 15610358
- Molecular and functional characterization of Arabidopsis Cullin 3A. DOI: 10.1111/j.1365-313X.2004.02302.x ; PMID: 15659098
- Retrograde plastid redox signals in the expression of nuclear genes for chloroplast proteins of Arabidopsis thaliana. DOI: 10.1074/jbc.M406358200 ; PMID: 15561727
- Proteomic analysis and extensive protein identification from dry, germinating Arabidopsis seeds and young seedlings. DOI: 10.5483/bmbrep.2005.38.6.650 ; PMID: 16336779
- Functional equivalence of translation factor eIF5B from Candida albicans and Saccharomyces cerevisiae. DOI: S1016-8478(23)17567-4 ; PMID: 18414002
- GCN2-dependent phosphorylation of eukaryotic translation initiation factor-2alpha in Arabidopsis. DOI: 10.1093/jxb/ern169 ; PMID: 18603615
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- The Arabidopsis eukaryotic translation initiation factor 3, subunit F (AteIF3f), is required for pollen germination and embryogenesis. DOI: 10.1111/j.1365-313X.2010.04237.x ; PMID: 20444226
- The GCN2 homologue in Arabidopsis thaliana interacts with uncharged tRNA and uses Arabidopsis eIF2α molecules as direct substrates. DOI: 10.1111/j.1438-8677.2012.00606.x ; PMID: 22672016
- The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants. DOI: 10.1016/j.cell.2014.01.039 ; PMID: 24529374
- The inhibition of protein translation mediated by AtGCN1 is essential for cold tolerance in Arabidopsis thaliana. DOI: 10.1111/pce.12826 ; PMID: 27577186
- Arabidopsis ILITHYIA protein is necessary for proper chloroplast biogenesis and root development independent of eIF2α phosphorylation. DOI: 10.1016/j.jplph.2018.04.003 ; PMID: 29680783
- Arabidopsis GCN2 kinase contributes to ABA homeostasis and stomatal immunity. DOI: 10.1038/s42003-019-0544-x ; PMID: 31428690
- Light Activates the Translational Regulatory Kinase GCN2 via Reactive Oxygen Species Emanating from the Chloroplast. DOI: 10.1105/tpc.19.00751 ; PMID: 32079667
- Light-Dependent Activation of the GCN2 Kinase Under Cold and Salt Stress Is Mediated by the Photosynthetic Status of the Chloroplast. DOI: 10.3389/fpls.2020.00431 ; PMID: 32411155
- General Control Non-derepressible 1 (AtGCN1) Is Important for Flowering Time, Plant Growth, Seed Development, and the Transcription/Translation of Specific Genes in Arabidopsis. DOI: 10.3389/fpls.2021.630311 ; PMID: 33868334
- Phosphorylation of the alpha-subunit of plant eukaryotic initiation factor 2 prevents its association with polysomes but does not considerably suppress protein synthesis. DOI: 10.1016/j.plantsci.2022.111190 ; PMID: 35193739
- Modulation of GCN2 activity under excess light stress by osmoprotectants and amino acids. DOI: 10.1080/15592324.2022.2115747 ; PMID: 36093942
- Analysis of the Arabidopsis nuclear proteome and its response to cold stress. DOI: 10.1046/j.1365-313x.2003.01907.x ; PMID: 14617066
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
Gene Resources
- UniProt: A0A654F0F3
- EMBL: CACRSJ010000105, LR881467
- AlphaFoldDB: A0A654F0F3
- EnsemblPlants: AT2G39990.1
- Gramene: AT2G39990.1
- KEGG: ath:AT2G39990
- Orthologous matrix: EYFVHFH
- ExpressionAtlas: AT2G39990
- InterPro: IPR000555, IPR024969, IPR027531
- PANTHER: PTHR10540, PTHR10540:SF6
- PROSITE: PS50249
- Gene3D: 3.40.140.10
- SWISS-MODEL: A0A654F0F3
- Conserved Domain Database: cd08064
Sequences
cDNA Sequence
- >AT2G39990.1
TGTAGATGTTAAATTATGAGAAAAACACAATTTCACTTTCACAGTGTATAATATTCAAAATTCAATGATAAACACACACACAAAAACGTTATAAAAAACCCAAACCGACGATGAGTAACCAAACCGATGTATAAAACGACATTGCCTTTCTCTGTTTTTTGTGTTCAACAAATTTCATTAAGAGAAAGAAGGGAAGTGTTTGAATGAGTATTCATTCATTAGTCCAAGAAAAACATTTAATGGGCCTGTTTGTAGGCCCACTGGCACATAACCTATCTTCTGTATCATTGATGCCTTCTCCTACCTTCCTCTGACGCTCACATCGGAAACCCTAAATCTCCACTCTCTCGCGCCTTTTACCCCTTCTCAGAATCTTAACCATGGCGGCGACGAGCGAGCACACCATCTTGCAATTTGTGTCTCCGTCATCAACGGCGTCCGCTACAACCTCTGTACTCACGGCGAGGATCCACCCTCTCGTTATCTTTAACGTCTGTGATTGCTTCGTGAGACGTCCTGACTCAGCTGAACGAGTCATCGGAACTCTCCTCGGATCTATCTTACCTGACGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTCACAATGAATCATCCGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTTCACACCTTAAGGTGAATTCAAAGGAAACTATTGTCGGCTGGTATTCAACTGGTGCTGGGGTTAATGGCGGTAGTTCGCTGATTCATGATTTCTATGCTAGAGAAGTACCCAACCCAATTCACCTAACTGTGGATACTGGGTTTACTAATGGTGAGGGTACTATCAAAGCTTTTGTCTCTTCAAACCTCTCACTCGGTGATCGACAACTCGTTGCACATTTTCAAGAGATTCCTGTTGATCTCCGCATGGTTGATGCTGAGAGAGTCGGATTCGATGTACTTAAGGCAACATCTGTTGACAAACTCCCAAATGACTTGGAAGGAATGGAGTTAACAATGGAGAGGCTGTTAACTCTAATCAACGATGTCTACAAATATGTTGACAGTGTCGTGGGAGGTCAAATAGCTCCAGACAACAACATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAGGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTATAATAAGCTTGGAAACACAAGGTTTTGCTAAAAATGGGGAATGCTGCTTTTTTGGTTTCGAATTTTCTTTTAACAAGTTTATGTAAGAATCAGCTTCTTGTTGTAGTGTTCCTAAATTGCAAGTTTAAGAAAGACAAAATGCTCTGTTTCGTGAATTAAGGTCTTTAAAAGGGATTTTTAGTTGGTGTGCCTAATTTTAAACAATATACATATAAATGAGCTTTGTTCTTTTTTTATTTGCCACTTGTTGCGCCTAATCTTTATCACTGGAGATATTTATGCTCAGAATTTTGG
CDS Sequence
- >AT2G39990.1
ATGGCGGCGACGAGCGAGCACACCATCTTGCAATTTGTGTCTCCGTCATCAACGGCGTCCGCTACAACCTCTGTACTCACGGCGAGGATCCACCCTCTCGTTATCTTTAACGTCTGTGATTGCTTCGTGAGACGTCCTGACTCAGCTGAACGAGTCATCGGAACTCTCCTCGGATCTATCTTACCTGACGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTCACAATGAATCATCCGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTTCACACCTTAAGGTGAATTCAAAGGAAACTATTGTCGGCTGGTATTCAACTGGTGCTGGGGTTAATGGCGGTAGTTCGCTGATTCATGATTTCTATGCTAGAGAAGTACCCAACCCAATTCACCTAACTGTGGATACTGGGTTTACTAATGGTGAGGGTACTATCAAAGCTTTTGTCTCTTCAAACCTCTCACTCGGTGATCGACAACTCGTTGCACATTTTCAAGAGATTCCTGTTGATCTCCGCATGGTTGATGCTGAGAGAGTCGGATTCGATGTACTTAAGGCAACATCTGTTGACAAACTCCCAAATGACTTGGAAGGAATGGAGTTAACAATGGAGAGGCTGTTAACTCTAATCAACGATGTCTACAAATATGTTGACAGTGTCGTGGGAGGTCAAATAGCTCCAGACAACAACATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAGGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTATAA
Protein Sequence
- >AT2G39990.1
MAATSEHTILQFVSPSSTASATTSVLTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDVLKATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNIGRFIADAVASLPKLPPQVFDNLVNDSLQDQLLLLYLSSITRTQLSLAEKLNTAAQML