Information report for AT2G39900
Gene Details
|
|
Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , pollen tube cell , pollen
Literature and News
- Coordinate repression of regulators of embryonic identity by PICKLE during germination in Arabidopsis. DOI: 10.1046/j.1365-313x.2003.01783.x ; PMID: 12834400
- Large-scale identification of leaf senescence-associated genes. DOI: 10.1046/j.1365-313x.2003.01908.x ; PMID: 14617064
- Genome-wide analysis of LIM gene family in Populus trichocarpa, Arabidopsis thaliana, and Oryza sativa. DOI: 10.1093/dnares/dsm013 ; PMID: 17573466
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. DOI: 10.1104/pp.108.126979 ; PMID: 18805951
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns and modes of regulation. DOI: 10.1105/tpc.110.075960 ; PMID: 20817848
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
Gene Resources
- UniProt: A0A178VU35
- EMBL: CACRSJ010000105, CACSHJ010000088, LR881467
- AlphaFoldDB: A0A178VU35
- EnsemblPlants: AT2G39900.1
- Gramene: AT2G39900.1
- KEGG: ath:AT2G39900
- Orthologous matrix: DKDRELY
- ExpressionAtlas: AT2G39900
- InterPro: IPR001781
- PANTHER: PTHR24206
- SUPFAM: SSF57716
- PROSITE: PS00478, PS50023
- Gene3D: 2.10.110.10
- OrthoDB: A0A178VU35
- Conserved Domain Database: cd09440, cd09441
Sequences
cDNA Sequence
- >AT2G39900.1
AAAAAAACCTTAATTTAGTGAGATAGAGAAGAGAAGAAACAGAATTGTTGTTGGTTTAACAAAAACCTAATCTTTCAATGATTAGCTGTTTAATTTGAAATTATAACAATAATTTAGACAGGCCAAAGTGGAACCCCACTGTCTCCACCAAAGCTCTAGATAAAAAAAAAAAAACGAAAGCGTTAGATATTTTTTATCAATCGTGCTCCGTAATCATTACCTTTCTTCTTCATCTTCATCTTCACGCAGCGACTTCTTTGATTCTCTCTTTTTATTCTCAGCTCCAATTTCAACCTGCATTTCTCTCTTCTCAATTTTGGGTTTCTTTTTTTGATATCTCATTTGATCAGATCGACGAAGAGAGGAAGAAGGTTTGAGCTGAGAGATCTTTGGAGGTAGAAAGAAGATCTCAAAAACGATGTCGTTTACAGGAACTCAGCAGAAATGCAGGGCGTGCGAGAAGACAGTGTACCCTGTGGAGCTTCTCTCAGCTGATGGAATCTCTTATCACAAGGCTTGCTTCAAATGCTCTCACTGCAAAAGCAGACTTCAACTGAGCAATTATTCATCAATGGAAGGAGTGGTGTATTGTAGGCCTCATTTTGAGCAGCTTTTCAAGGAGTCTGGTAGTTTCAGCAAGAACTTTCAGTCACCTGCAAAGCCATTGACTGATAAGCCAACCCCGGAGCTGAATAGGACACCTAGTCGACTTGCTGGTATGTTCTCTGGAACGCAAGACAAATGCGCTACTTGCACTAAAACCGTGTATCCTATCGAAAAGGTAACTGTGGAAAGCCAGTGTTACCATAAATCTTGCTTCAAGTGTTCTCATGGAGGCTGTCCGATATCTCCATCGAACTATGCAGCTCTAGAGGGAATATTGTACTGCAAGCACCATTTCGCTCAGCTTTTCAAGGAGAAAGGAAGTTACAATCATCTCATCAAATCTGCTTCCATCAAACGCGCTACTGCTGCTGCTACCGCAGCTGCTGCAGCTGTAGCAGCCGTTCCCGAATCTTGAATTCAAATTCTCTTTATTTTTGTGTATGTGCTGTGTTGTTTACATGTATTCGATATGATTCATGTTCTTTGTCTTCCATAATTGAACCAGGCATAAAATTCTCCCAGTTTTCTCTGAGTTTCTTGTTTGTGATACTACTACATCTATAATAACCGAGGACTTTTGGCTTTGATCTT
CDS Sequence
- >AT2G39900.1
ATGTCGTTTACAGGAACTCAGCAGAAATGCAGGGCGTGCGAGAAGACAGTGTACCCTGTGGAGCTTCTCTCAGCTGATGGAATCTCTTATCACAAGGCTTGCTTCAAATGCTCTCACTGCAAAAGCAGACTTCAACTGAGCAATTATTCATCAATGGAAGGAGTGGTGTATTGTAGGCCTCATTTTGAGCAGCTTTTCAAGGAGTCTGGTAGTTTCAGCAAGAACTTTCAGTCACCTGCAAAGCCATTGACTGATAAGCCAACCCCGGAGCTGAATAGGACACCTAGTCGACTTGCTGGTATGTTCTCTGGAACGCAAGACAAATGCGCTACTTGCACTAAAACCGTGTATCCTATCGAAAAGGTAACTGTGGAAAGCCAGTGTTACCATAAATCTTGCTTCAAGTGTTCTCATGGAGGCTGTCCGATATCTCCATCGAACTATGCAGCTCTAGAGGGAATATTGTACTGCAAGCACCATTTCGCTCAGCTTTTCAAGGAGAAAGGAAGTTACAATCATCTCATCAAATCTGCTTCCATCAAACGCGCTACTGCTGCTGCTACCGCAGCTGCTGCAGCTGTAGCAGCCGTTCCCGAATCTTGA
Protein Sequence
- >AT2G39900.1
MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRATAAATAAAAAVAAVPES