Information report for AT2G39880
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
Literature and News
- Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. DOI: 10.1046/j.1365-313x.1998.00278.x ; PMID: 9839469
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The R2R3-MYB gene family in Arabidopsis thaliana. DOI: 10.1016/s1369-5266(00)00199-0 ; PMID: 11597504
- Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. DOI: 10.1105/tpc.104.022830 ; PMID: 15258262
- Identification of conserved gene structures and carboxy-terminal motifs in the Myb gene family of Arabidopsis and Oryza sativa L. ssp. indica. DOI: 10.1186/gb-2004-5-7-r46 ; PMID: 15239831
- Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis. DOI: 10.1104/pp.106.082289 ; PMID: 16920880
- Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. DOI: 10.1016/j.cub.2010.01.051 ; PMID: 20226671
- Wide-scale screening of T-DNA lines for transcription factor genes affecting male gametophyte development in Arabidopsis. DOI: 10.1007/s00497-011-0178-8 ; PMID: 22101548
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- Characterization of Arabidopsis thaliana R2R3 S23 MYB Transcription Factors as Novel Targets of the Ubiquitin Proteasome-Pathway and Regulators of Salt Stress and Abscisic Acid Response. DOI: 10.3389/fpls.2021.629208 ; PMID: 34489986
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Gene Resources
- UniProt: A0A5S9X639
- EMBL: CACSHJ010000088, LR881467
- AlphaFoldDB: A0A5S9X639
- EnsemblPlants: AT2G39880.1
- Gramene: AT2G39880.1
- KEGG: ath:AT2G39880
- Orthologous matrix: IMSAHAV
- ExpressionAtlas: AT2G39880
- InterPro: IPR001005, IPR009057, IPR017930
- PANTHER: PTHR45614, PTHR45614:SF229
- SUPFAM: SSF46689
- PROSITE: PS50090, PS51294
- Gene3D: 1.10.10.60
- OrthoDB: A0A5S9X639
- SWISS-MODEL: A0A5S9X639
- Conserved Domain Database: cd00167
Homologs
- Brassica napus GSBRNA2T00012594001, GSBRNA2T00116801001, GSBRNA2T00037152001, GSBRNA2T00156044001
- Brassica oleracea XP_013633911.1, XP_013599758.1
- Brassica rapa XP_009143276.1, XP_009116273.1
- Raphanus raphanistrum RrC5096_p1
Sequences
cDNA Sequence
- >AT2G39880.1
GAGGACCCCGGTTGGTTTCATTTTTTTGAAATTTCAATTTTATTTCCGATGAACGGAGAAATCTCTCGTCCGCCGGAGCTAATATCGTCCCGGAATCCTTGCAAGAGTTTTGAAAATGCAATACACAAAGCAGTTGAGGCAGAGCTCGCCGAGCTAGCGAAAAGCGACGCGAACGGCGGCGGAAAGAGTAAAGTGAAAGGACCTTGGTTGCCGGAGCAAGATGAGGCTCTCACGAGGCTTGTGAAAATGTGTGGGCCGAGGAACTGGAATCTAATCTCCCGTGGAATCCCAGGTCGCTCTGGTAAATCTTGCCGATTACGTTGGTGTAATCAGCTCGATCCTATCCTCAAACGAAAACCTTTCTCTGATGAGGAGGAGCATATGATAATGTCTGCACAGGCGGTTCTTGGGAACAAATGGTCTGTGATTGCTAAACTCTTACCTGGGAGAACAGATAATGCCATTAAGAATCATTGGAACTCTAATCTTAGACGTAAACCAGCAGAACAATGGAAGATTCCTCTATTGATGTCTAATACAGAGATAGTATATCAACTGTATCCATCAATGGTCAGAAGGATATCAAACGCATCCCCCAAAGAACATCTACCTCAAGAAGAAGAAACCGGTGTATTAAGTGATGATAAAATGGATGATGAAGCAAAGGAGCCTCCTCGGGAGCAAAATAGTAAAACTGGTGTTTATCGTCCAGTGGCTCGAATGGGTGCTTTCAGTGTCTGTAAACCAGGATACATGGCTCCATGTGAGGGACCTTTGGTTCAAGCATCAAGACCTGACTCATTGGCTGGTAAATTTCTTCAGTCTCTTTGTTATGATCCTATTATCCCTTCAAAATGCGGTCACGGTTGCTGCAACCATCAAGACAGCACAACACTGTCATCATCGTCGGTGCTGGGATCAGAGTTTGTGGATTATGAGGAACATTCTTCTGCAGAGTTAGATAAAGAATTGATCTCTATATCAAATGACCTGAACAATACTGCTTGGATTAGGAGTGGGAAGGAAGCTGAACAGAGTTTGAAGGCTGATGATCAGTTTCGTCGTGAGTATGCTCACTCGAAATTTAGTGGAATGGTAAACAATGGTGTATCAAGTCAGATGGTGAGACAAGATTTAAGGGCTTTGAGCTAACGTTAGAGACAAAACATTCATTCAATATCTCTTTGTTAATTATATTCTTACCAGATCATAAAGATTGAAACTTTACAAGTACTAAGCTGGCATTTCCTGGGGAAATTCTTCAAGGCAAATAAAAAAATTCGAAAAAATGCATTTTTAGATAAAGTGAATGATTTTTATGTTTTTCGACAATTCGACTTCAATAGGATATGTTCATTTTGGGCATCTTCGTAGGAAGGATGTATG
CDS Sequence
- >AT2G39880.1
ATGAACGGAGAAATCTCTCGTCCGCCGGAGCTAATATCGTCCCGGAATCCTTGCAAGAGTTTTGAAAATGCAATACACAAAGCAGTTGAGGCAGAGCTCGCCGAGCTAGCGAAAAGCGACGCGAACGGCGGCGGAAAGAGTAAAGTGAAAGGACCTTGGTTGCCGGAGCAAGATGAGGCTCTCACGAGGCTTGTGAAAATGTGTGGGCCGAGGAACTGGAATCTAATCTCCCGTGGAATCCCAGGTCGCTCTGGTAAATCTTGCCGATTACGTTGGTGTAATCAGCTCGATCCTATCCTCAAACGAAAACCTTTCTCTGATGAGGAGGAGCATATGATAATGTCTGCACAGGCGGTTCTTGGGAACAAATGGTCTGTGATTGCTAAACTCTTACCTGGGAGAACAGATAATGCCATTAAGAATCATTGGAACTCTAATCTTAGACGTAAACCAGCAGAACAATGGAAGATTCCTCTATTGATGTCTAATACAGAGATAGTATATCAACTGTATCCATCAATGGTCAGAAGGATATCAAACGCATCCCCCAAAGAACATCTACCTCAAGAAGAAGAAACCGGTGTATTAAGTGATGATAAAATGGATGATGAAGCAAAGGAGCCTCCTCGGGAGCAAAATAGTAAAACTGGTGTTTATCGTCCAGTGGCTCGAATGGGTGCTTTCAGTGTCTGTAAACCAGGATACATGGCTCCATGTGAGGGACCTTTGGTTCAAGCATCAAGACCTGACTCATTGGCTGGTAAATTTCTTCAGTCTCTTTGTTATGATCCTATTATCCCTTCAAAATGCGGTCACGGTTGCTGCAACCATCAAGACAGCACAACACTGTCATCATCGTCGGTGCTGGGATCAGAGTTTGTGGATTATGAGGAACATTCTTCTGCAGAGTTAGATAAAGAATTGATCTCTATATCAAATGACCTGAACAATACTGCTTGGATTAGGAGTGGGAAGGAAGCTGAACAGAGTTTGAAGGCTGATGATCAGTTTCGTCGTGAGTATGCTCACTCGAAATTTAGTGGAATGGTAAACAATGGTGTATCAAGTCAGATGGTGAGACAAGATTTAAGGGCTTTGAGCTAA
Protein Sequence
- >AT2G39880.1
MNGEISRPPELISSRNPCKSFENAIHKAVEAELAELAKSDANGGGKSKVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDPILKRKPFSDEEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRKPAEQWKIPLLMSNTEIVYQLYPSMVRRISNASPKEHLPQEEETGVLSDDKMDDEAKEPPREQNSKTGVYRPVARMGAFSVCKPGYMAPCEGPLVQASRPDSLAGKFLQSLCYDPIIPSKCGHGCCNHQDSTTLSSSSVLGSEFVDYEEHSSAELDKELISISNDLNNTAWIRSGKEAEQSLKADDQFRREYAHSKFSGMVNNGVSSQMVRQDLRALS