Information report for AT2G39720
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
Literature and News
- Widespread occurrence of a highly conserved RING-H2 zinc finger motif in the model plant Arabidopsis thaliana. DOI: 10.1016/s0014-5793(98)01143-0 ; PMID: 9781696
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice. DOI: 10.1016/s0168-9525(02)02796-8 ; PMID: 12446138
- Genome-wide gene expression profiling in Arabidopsis thaliana reveals new targets of abscisic acid and largely impaired gene regulation in the abi1-1 mutant. DOI: 10.1242/jcs.00175 ; PMID: 12432076
- Transcriptional profiling of imbibed Brassica napus seed. DOI: 10.1016/j.ygeno.2005.07.006 ; PMID: 16125897
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- Suppression of Arabidopsis RING-DUF1117 E3 ubiquitin ligases, AtRDUF1 and AtRDUF2, reduces tolerance to ABA-mediated drought stress. DOI: 10.1016/j.bbrc.2012.02.131 ; PMID: 22405823
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Gene Resources
- UniProt: A0A178W067
- EMBL: LUHQ01000002
- AlphaFoldDB: A0A178W067
- EnsemblPlants: AT2G39720.1, AT2G39720.2
- Gramene: AT2G39720.1, AT2G39720.2
- KEGG: ath:AT2G39720
- Orthologous matrix: TRSFSMF
- ExpressionAtlas: AT2G39720
- InterPro: IPR001841, IPR010543, IPR013083
- PANTHER: PTHR15710, PTHR15710:SF93
- SUPFAM: SSF57850
- PROSITE: PS50089
- Gene3D: 3.30.40.10
- SWISS-MODEL: A0A178W067
Homologs
- Brassica napus BnaC05G0452100ZS
- Brassica oleracea Bo5g127480
- Musa acuminata Ma05_g07420
- Oryza sativa OsSIRP1, OsDSG1, OsCLR1;DSNP1, OsSDIR1
- Petunia inflata Peinf101Scf01969g06011.1
- Solanum lycopersicum Solyc00g007220.3
- Vitis vinifera VIT_07s0031g00400
Sequences
cDNA Sequence
- >AT2G39720.2
TTTAATTAAAATTACCAACAAGGAGGAAAAAAAAAAAAAGAGGAGGAGGTGGTGGTGACAGCACACGAAATGGACGGTTGGGTATAAGCCAATTCTGTAATCTTCTTGTTAACACCTCCTTCTTCTCCTCCGTTTATCCTCAAATTAAAAGTCAATCATATCAAATCCCAAATCCTCCCAGATGTTTTTATCATCTTCTTCTTCCTGAAGATTTGATTTCATTTTCCTCTCTTTCAGATCCCTATTCTCATGGCTTCTGGATCTTACTGGTGCTATAGTTGTAGCCGATTCGTTTGGGTTTCCGATTCAATCTCTTGCCCTGATTGCGACGGTGGTTTCCTCGAACTCATCCAAGAGCCTCTCGATTTCACACCTTCCGATTCCTTCACCACCACCACCACCACTCAACATCGCAGCCCCACTCGCTTCCCTCCTCCTTCTTCTTCTTCCTCCACCCCATCCGCTTCTATGCACGCCGATAACAGTCCCACTCCTACCATCGTTACTCGTACACGAAGCAATCGATCTCCTAATCCAGTTATTGTTCTCCGTGGATCTGCTGCTGCTCCTTCTTCTGATGTTGTTTCCGAAGGTTTAGATCGATCTGCTTTTCAGATGTATTACGATGATGGTACTGATTCTGGTCTTAGACCTTTACCACCGAGTATGACTGAGTTTTTGTTAGGTTCTGGATTTGATCGTTTGTTAGATCAGATTTCTCAGATCGAGCTTAACACCAATCGGAATCTTCGTTCTTGTGAACATCCACCGGCTTCTAAATCGGCCATTGAAGCTTTGCCTCTGATTGAAATCGATCCGACTCATCTCTTATCGGATTCTCAATCTCATTGCGCTGTTTGCAAAGAGAATTTCGTTTTGAAATCATCTGCTCGCGAGATGCCTTGTAATCACATCTATCATCCTGATTGTATTCTTCCTTGGCTTGCGATTCGTAACTCTTGTCCGGTTTGCCGTCATGAGCTACCGGCGGAGGATCTCACCGACGGAACCGGTGCTGCTTTGACTGCTGTTACCGCTACTGCAGAGGAAGAGGAAGACTCAGCTGCGGGGTTAACGATTTGGAGGTTACCAGGTGGAGGATTCGCTGTAGGGAGAATCCCTGGTGGTTGGAGAGGTGGAGATAGAATGATGCCGGTGGTTTACACGGAGGTTGATGGTGGTAGACTCGGTGATGAGAGACTTCCGAGAAGAGTAGCTTGGGGTTCGAGAAGAGGTGGAAGAGATGGTGGAGGTAGTAGAGAGAGAGGTGGTGGCTTTGCGGGTCGGATCATGAGGCTTTTCGGATGTTTTAGTGGATCATCTGGATCCATTGCTGCTGCTGCTGCTGCATCATCCGGGTCCGGGTCCAGAATTCGGGTTACTCGTAGAACCAGGTCGTTCTCTATGTTCAGTACGGCGTCGTCTTCGTCAAGGAGACGAAATTGGCTAGCGTGATTACTAGAATTACCAAGCTCTCTTCTCAGGTGAAAACTAAACACGAAAGAACACACTCTTCTTCTGTTTAAATTTTTCCTATGTTCCTTATTAAGTTTTTGTCTATTTCAGTGTAATGATTATATTCATTCCTAAAATTTGAATCTATGCGAGTAAATTGATACAAAATTAGGTGACATAGTGTCTTCAGTGGCAAATTTAGGAGGATATGTTACTGTGAGTCTGTGACTAGATAAGTGAGAGTGTAGATGAATTGAAGAATGTACTCTGAAGGAGATTCATAGTTGTTCTATTTGTAGAAATCGTTACGTGAGTCTATGGATTGTGATACTAATGTTAAGCAGCTTAACCATAAAATAGCGAATGATTTCCAAACGATATTATCATTACATGACTTTTCAACAAACTTGAAAAGTTATTTTGTGGAGTAGATTTCCTGCAATTCATTTCAGAGTATACATATGTGGTGTTACTAACCAATACTATGGGTTTTAATATATATTAACCTGTGAGTACATACTTAGATGACTAAATCTTTAGTGTTCAAACCTAAGTTTTTCATTAATTTTTAAGTTGATGGTTTATTTTCCACGCCTAAAGAGAATTATGCTGCCAAACTTGTACAGCTATAATCTTGGAACTGCAGACACAACCCAATGATACTTACCTAGAGGCTATATATAGAAGAATCTTATAAAGAGACCAATTAAGTTTGAGGTCAATAACCACAGGAAACGTGAAGTAAAGCAATAATAGAGTTTTTATACAACGCATCTGATGATGCTGTCGTTTATTGGAGACAGTCTTTGTAATTTAGCCATTATTTTCCATTAATAGATTTGTTTATGCCCGTTTATGTCTCCTATGTGAATGTACACTTACTCTATCACATTATTGAATTTG - >AT2G39720.1
TTTAATTAAAATTACCAACAAGGAGGAAAAAAAAAAAAAGAGGAGGAGGTGGTGGTGACAGCACACGAAATGGACGGTTGGGTATAAGCCAATTCTGTAATCTTCTTGTTAACACCTCCTTCTTCTCCTCCGTTTATCCTCAAATTAAAAGTCAATCATATCAAATCCCAAATCCTCCCAGATGTTTTTATCATCTTCTTCTTCCTGAAGATTTGATTTCATTTTCCTCTCTTTCAGATCCCTATTCTCATGGCTTCTGGATCTTACTGGTGCTATAGTTGTAGCCGATTCGTTTGGGTTTCCGATTCAATCTCTTGCCCTGATTGCGACGGTGGTTTCCTCGAACTCATCCAAGAGCCTCTCGATTTCACACCTTCCGATTCCTTCACCACCACCACCACCACTCAACATCGCAGCCCCACTCGCTTCCCTCCTCCTTCTTCTTCTTCCTCCACCCCATCCGCTTCTATGCACGCCGATAACAGTCCCACTCCTACCATCGTTACTCGTACACGAAGCAATCGATCTCCTAATCCAGTTATTGTTCTCCGTGGATCTGCTGCTGCTCCTTCTTCTGATGTTGTTTCCGAAGGTTTAGATCGATCTGCTTTTCAGATGTATTACGATGATGGTACTGATTCTGGTCTTAGACCTTTACCACCGAGTATGACTGAGTTTTTGTTAGGTTCTGGATTTGATCGTTTGTTAGATCAGATTTCTCAGATCGAGCTTAACACCAATCGGAATCTTCGTTCTTGTGAACATCCACCGGCTTCTAAATCGGCCATTGAAGCTTTGCCTCTGATTGAAATCGATCCGACTCATCTCTTATCGGATTCTCAATCTCATTGCGCTGTTTGCAAAGAGAATTTCGTTTTGAAATCATCTGCTCGCGAGATGCCTTGTAATCACATCTATCATCCTGATTGTATTCTTCCTTGGCTTGCGATTCGTAACTCTTGTCCGGTTTGCCGTCATGAGCTACCGGCGGAGGATCTCACCGACGGAACCGGTGCTGCTTTGACTGCTGTTACCGCTACTGCAGAGGAAGAGGAAGACTCAGCTGCGGGGTTAACGATTTGGAGGTTACCAGGTGGAGGATTCGCTGTAGGGAGAATCCCTGGTGGTTGGAGAGGTGGAGATAGAATGATGCCGGTGGTTTACACGGAGGTTGATGGTGGTAGACTCGGTGATGAGAGACTTCCGAGAAGAGTAGCTTGGGGTTCGAGAAGAGGTGGAAGAGATGGTGGAGGTAGTAGAGAGAGAGGTGGTGGCTTTGCGGGTCGGATCATGAGGCTTTTCGGATGTTTTAGTGGATCATCTGGATCCATTGCTGCTGCTGCTGCTGCATCATCCGGGTCCGGGTCCAGAATTCGGGTTACTCGTAGAACCAGGTCGTTCTCTATGTTCAGTACGGCGTCGTCTTCGTCAAGGAGACGAAATTGGCTAGCGTGATTACTAGAATTACCAAGCTCTCTTCTCAGGTGAAAACTAAACACGAAAGAACACACTCTTCTTCTGTTTAAATTTTTCCTATGTTCCTTATTAAGTTTTTGTCTATTTCAGTGTAATGATTATATTCATTCCTAAAATTTGAATCTATGCGAGTAAATTGATACAAAATTAGGTGACATAGTGTCTTCAGTGGCAAATTTAGGAGGATATGTTACTGTGAGTCTGTGACTAGATAAGTGAGAGTGTAGATGAATTGAAGAATGTACTCTGAAGGAGATTCATAGTTGTTCTATTTGTAGAAATCGTTACGTGAGTCTATGGATTGTGATACTAATGTTAAGCAGCTTAACCATAAAATAGCGAATGATTTCCAAACGATATTATCATTACATGACTTTTCAACAAACTTGAAAAGTTATTTTGTGGAGTAGATTTCCTGCAATTCATTTCAGAGTATACATATGTGGTGTTACTAACCAATACTATGGGTTTTAATATATATTAACCTGTGAGTACATACTTAGATGACTAAATCTTTAGTGTTCAAACCTAAGTTTTTCATTAATTTTTAAGTTGATGGTTTATTTTCCACGCCTAAAGAGAATTATGCTGCCAAACTTGTACAGCTATAATCTTGGAACTGCAGACACAACCCAATGATACTTACCTAGAGGCTATATATAGAAGAATCTTATAAAGAGACCAATTAAGTTTGAGGTCAATAACCACAGGAAACGTGAAGTAAAGCAATAATAGAGTTTTTATACAACGCATCTGATGATGCTGTCGTTTATTGGAGACAGTCTTTGTAATTTAGCCATTATTTTCCATTAATAGATTTGTTTATGCCCGTTTATGTCTCCTATGTGAATGTACACTTACTCTATCACATTATTGAATTTG
CDS Sequence
- >AT2G39720.2
ATGGCTTCTGGATCTTACTGGTGCTATAGTTGTAGCCGATTCGTTTGGGTTTCCGATTCAATCTCTTGCCCTGATTGCGACGGTGGTTTCCTCGAACTCATCCAAGAGCCTCTCGATTTCACACCTTCCGATTCCTTCACCACCACCACCACCACTCAACATCGCAGCCCCACTCGCTTCCCTCCTCCTTCTTCTTCTTCCTCCACCCCATCCGCTTCTATGCACGCCGATAACAGTCCCACTCCTACCATCGTTACTCGTACACGAAGCAATCGATCTCCTAATCCAGTTATTGTTCTCCGTGGATCTGCTGCTGCTCCTTCTTCTGATGTTGTTTCCGAAGGTTTAGATCGATCTGCTTTTCAGATGTATTACGATGATGGTACTGATTCTGGTCTTAGACCTTTACCACCGAGTATGACTGAGTTTTTGTTAGGTTCTGGATTTGATCGTTTGTTAGATCAGATTTCTCAGATCGAGCTTAACACCAATCGGAATCTTCGTTCTTGTGAACATCCACCGGCTTCTAAATCGGCCATTGAAGCTTTGCCTCTGATTGAAATCGATCCGACTCATCTCTTATCGGATTCTCAATCTCATTGCGCTGTTTGCAAAGAGAATTTCGTTTTGAAATCATCTGCTCGCGAGATGCCTTGTAATCACATCTATCATCCTGATTGTATTCTTCCTTGGCTTGCGATTCGTAACTCTTGTCCGGTTTGCCGTCATGAGCTACCGGCGGAGGATCTCACCGACGGAACCGGTGCTGCTTTGACTGCTGTTACCGCTACTGCAGAGGAAGAGGAAGACTCAGCTGCGGGGTTAACGATTTGGAGGTTACCAGGTGGAGGATTCGCTGTAGGGAGAATCCCTGGTGGTTGGAGAGGTGGAGATAGAATGATGCCGGTGGTTTACACGGAGGTTGATGGTGGTAGACTCGGTGATGAGAGACTTCCGAGAAGAGTAGCTTGGGGTTCGAGAAGAGGTGGAAGAGATGGTGGAGGTAGTAGAGAGAGAGGTGGTGGCTTTGCGGGTCGGATCATGAGGCTTTTCGGATGTTTTAGTGGATCATCTGGATCCATTGCTGCTGCTGCTGCTGCATCATCCGGGTCCGGGTCCAGAATTCGGGTTACTCGTAGAACCAGGTCGTTCTCTATGTTCAGTACGGCGTCGTCTTCGTCAAGGAGACGAAATTGGCTAGCGTGA - >AT2G39720.1
ATGGCTTCTGGATCTTACTGGTGCTATAGTTGTAGCCGATTCGTTTGGGTTTCCGATTCAATCTCTTGCCCTGATTGCGACGGTGGTTTCCTCGAACTCATCCAAGAGCCTCTCGATTTCACACCTTCCGATTCCTTCACCACCACCACCACCACTCAACATCGCAGCCCCACTCGCTTCCCTCCTCCTTCTTCTTCTTCCTCCACCCCATCCGCTTCTATGCACGCCGATAACAGTCCCACTCCTACCATCGTTACTCGTACACGAAGCAATCGATCTCCTAATCCAGTTATTGTTCTCCGTGGATCTGCTGCTGCTCCTTCTTCTGATGTTGTTTCCGAAGGTTTAGATCGATCTGCTTTTCAGATGTATTACGATGATGGTACTGATTCTGGTCTTAGACCTTTACCACCGAGTATGACTGAGTTTTTGTTAGGTTCTGGATTTGATCGTTTGTTAGATCAGATTTCTCAGATCGAGCTTAACACCAATCGGAATCTTCGTTCTTGTGAACATCCACCGGCTTCTAAATCGGCCATTGAAGCTTTGCCTCTGATTGAAATCGATCCGACTCATCTCTTATCGGATTCTCAATCTCATTGCGCTGTTTGCAAAGAGAATTTCGTTTTGAAATCATCTGCTCGCGAGATGCCTTGTAATCACATCTATCATCCTGATTGTATTCTTCCTTGGCTTGCGATTCGTAACTCTTGTCCGGTTTGCCGTCATGAGCTACCGGCGGAGGATCTCACCGACGGAACCGGTGCTGCTTTGACTGCTGTTACCGCTACTGCAGAGGAAGAGGAAGACTCAGCTGCGGGGTTAACGATTTGGAGGTTACCAGGTGGAGGATTCGCTGTAGGGAGAATCCCTGGTGGTTGGAGAGGTGGAGATAGAATGATGCCGGTGGTTTACACGGAGGTTGATGGTGGTAGACTCGGTGATGAGAGACTTCCGAGAAGAGTAGCTTGGGGTTCGAGAAGAGGTGGAAGAGATGGTGGAGGTAGTAGAGAGAGAGGTGGTGGCTTTGCGGGTCGGATCATGAGGCTTTTCGGATGTTTTAGTGGATCATCTGGATCCATTGCTGCTGCTGCTGCTGCATCATCCGGGTCCGGGTCCAGAATTCGGGTTACTCGTAGAACCAGGTCGTTCTCTATGTTCAGTACGGCGTCGTCTTCGTCAAGGAGACGAAATTGGCTAGCGTGA
Protein Sequence
- >AT2G39720.2
MASGSYWCYSCSRFVWVSDSISCPDCDGGFLELIQEPLDFTPSDSFTTTTTTQHRSPTRFPPPSSSSSTPSASMHADNSPTPTIVTRTRSNRSPNPVIVLRGSAAAPSSDVVSEGLDRSAFQMYYDDGTDSGLRPLPPSMTEFLLGSGFDRLLDQISQIELNTNRNLRSCEHPPASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELPAEDLTDGTGAALTAVTATAEEEEDSAAGLTIWRLPGGGFAVGRIPGGWRGGDRMMPVVYTEVDGGRLGDERLPRRVAWGSRRGGRDGGGSRERGGGFAGRIMRLFGCFSGSSGSIAAAAAASSGSGSRIRVTRRTRSFSMFSTASSSSRRRNWLA - >AT2G39720.1
MASGSYWCYSCSRFVWVSDSISCPDCDGGFLELIQEPLDFTPSDSFTTTTTTQHRSPTRFPPPSSSSSTPSASMHADNSPTPTIVTRTRSNRSPNPVIVLRGSAAAPSSDVVSEGLDRSAFQMYYDDGTDSGLRPLPPSMTEFLLGSGFDRLLDQISQIELNTNRNLRSCEHPPASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELPAEDLTDGTGAALTAVTATAEEEEDSAAGLTIWRLPGGGFAVGRIPGGWRGGDRMMPVVYTEVDGGRLGDERLPRRVAWGSRRGGRDGGGSRERGGGFAGRIMRLFGCFSGSSGSIAAAAAASSGSGSRIRVTRRTRSFSMFSTASSSSRRRNWLA