Information report for AT2G39550
Gene Details
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Functional Descriptions
- PO:0009001 — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- era1-4 ggb-2 — Enlarged meristems, extra floral organs,retarded growth and reduced stature
- ggb-2 — Growth and morphology not significantly different from wild-type.
Functional Keywords
- fruit , root , vascular leaf , flower , stem , shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen
Literature and News
- Efficient prenylation by a plant geranylgeranyltransferase-I requires a functional CaaL box motif and a proximal polybasic domain. DOI: 10.1104/pp.126.4.1416 ; PMID: 11500541
- Cell cycle-regulated gene expression in Arabidopsis. DOI: 10.1074/jbc.M207570200 ; PMID: 12169696
- Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism. DOI: 10.1023/a:1023005504702 ; PMID: 12777052
- Protein geranylgeranyltransferase I is involved in specific aspects of abscisic acid and auxin signaling in Arabidopsis. DOI: 10.1104/pp.105.065045 ; PMID: 16183844
- Isoprenylcysteine methylation and demethylation regulate abscisic acid signaling in Arabidopsis. DOI: 10.1105/tpc.107.053389 ; PMID: 18957507
- The CaaX specificities of Arabidopsis protein prenyltransferases explain era1 and ggb phenotypes. DOI: 10.1186/1471-2229-10-118 ; PMID: 20565889
- Dual lipid modification of Arabidopsis Ggamma-subunits is required for efficient plasma membrane targeting. DOI: 10.1104/pp.106.093583 ; PMID: 17220359
Gene Resources
- UniProt: A0A178VS16
- EMBL: CACRSJ010000105, CACSHJ010000088, LR881467
- AlphaFoldDB: A0A178VS16
- EnsemblPlants: AT2G39550.1
- Gramene: AT2G39550.1
- KEGG: ath:AT2G39550
- Orthologous matrix: RWCLMRQ
- ExpressionAtlas: AT2G39550
- InterPro: IPR001330, IPR008930, IPR041960
- PANTHER: PTHR11774, PTHR11774:SF4
- SUPFAM: SSF48239
- Gene3D: 1.50.10.20
- OrthoDB: A0A178VS16
- SWISS-MODEL: A0A178VS16
- Conserved Domain Database: cd02895
Homologs
- Actinidia chinensis Achn304771
- Oryza sativa OsERA1
Sequences
cDNA Sequence
- >AT2G39550.1
CAAAAACTGTTTACTTTCCTCTAAGAGAAAGCAAAGCCGAGTGAGTCCAAGCGAGTTTTGAGAGATTCGTTGACTCACTACCGGAGAACGACGCTATGTCAGAGACCGCCGTGTCAATCGATTCGGACCGATCTAAGTCGGAGGAAGAAGACGAAGAAGAGTATTCTCCACCGGTGCAATCATCTCCGTCAGCGAATTTCGAGAAAGATCGACACTTGATGTATTTGGAGATGATGTACGAGTTGCTTCCGTACCATTACCAATCTCAGGAGATCAATCGTCTTACACTCGCTCATTTCATAATCTCGGGTCTTCATTTTCTCGGCGCAAGAGACCGTGTTGATAAAGATGTTGTTGCAAAGTGGGTTTTGTCCTTCCAGGCCTTTCCTACTAACAGAGTTTCACTGAAAGATGGAGAATTCTATGGTTTCTTTGGTTCAAGGAGTTCTCAGTTTCCCATTGATGAGAATGGGGATTTAAAGCACAACGGTAGTCACTTGGCAAGCACTTACTGTGCTTTGGCTATTCTGAAGGTCATTGGACATGATCTCTCGACCATCGACTCAAAATCATTGCTAATTTCCATGATAAACCTTCAACAGGATGATGGAAGCTTCATGCCTATCCATATTGGAGGTGAAACGGATCTTCGATTTGTATATTGTGCAGCTGCAATCTGTTACATGCTGGATAGTTGGAGTGGAATGGATAAGGAGAGTGCTAAGAACTACATATTAAACTGTCAGTCATATGATGGTGGTTTTGGATTGATCCCTGGTTCTGAATCTCATGGTGGTGCCACTTACTGTGCTATTGCATCCCTTCGGTTGATGGGATACATTGGAGTTGATCTGCTGTCAAATGATTCATCCAGTTCAATAATAGACCCTTCATTACTTCTCAACTGGTGCCTACAGAGACAAGCAAATGATGGTGGGTTTCAAGGTAGGACTAACAAGCCAAGTGACACATGCTATGCATTTTGGATTGGAGCTGTCCTTAAACTTATAGGAGGCGATGCATTGATCGACAAAATGGCTCTGCGCAAATTTTTAATGAGTTGTCAGTCCAAGTATGGTGGATTCAGTAAATTCCCCGGACAATTACCAGATCTGTATCATTCATACTACGGTTACACGGCTTTTAGTCTCTTGGAAGAACAGGGCTTGAGTCCTCTATGTCCTGAGCTAGGTTTACCTCTTCTTGCAGCCCCGGGAATTTGATGTTTAGATTGTCTCAAAGTCACATTCTTTTTTCACCACATTGTAACATTTATGTCAACATTCCGTGTGGTAACATTGCTAAAACTCACAGAATGAATATTGTAAACCAAAGAAAAGCAAATTTAGTTGTTGAGTTTTATTTTCTGTTCTTTTTAGACTAGGGACGAAAAATCAAAAACTTTTAAATCATAAATCTGTGAATAAGATGTTGCATGATTGTGTAAGAAAGTTCGGG
CDS Sequence
- >AT2G39550.1
ATGTCAGAGACCGCCGTGTCAATCGATTCGGACCGATCTAAGTCGGAGGAAGAAGACGAAGAAGAGTATTCTCCACCGGTGCAATCATCTCCGTCAGCGAATTTCGAGAAAGATCGACACTTGATGTATTTGGAGATGATGTACGAGTTGCTTCCGTACCATTACCAATCTCAGGAGATCAATCGTCTTACACTCGCTCATTTCATAATCTCGGGTCTTCATTTTCTCGGCGCAAGAGACCGTGTTGATAAAGATGTTGTTGCAAAGTGGGTTTTGTCCTTCCAGGCCTTTCCTACTAACAGAGTTTCACTGAAAGATGGAGAATTCTATGGTTTCTTTGGTTCAAGGAGTTCTCAGTTTCCCATTGATGAGAATGGGGATTTAAAGCACAACGGTAGTCACTTGGCAAGCACTTACTGTGCTTTGGCTATTCTGAAGGTCATTGGACATGATCTCTCGACCATCGACTCAAAATCATTGCTAATTTCCATGATAAACCTTCAACAGGATGATGGAAGCTTCATGCCTATCCATATTGGAGGTGAAACGGATCTTCGATTTGTATATTGTGCAGCTGCAATCTGTTACATGCTGGATAGTTGGAGTGGAATGGATAAGGAGAGTGCTAAGAACTACATATTAAACTGTCAGTCATATGATGGTGGTTTTGGATTGATCCCTGGTTCTGAATCTCATGGTGGTGCCACTTACTGTGCTATTGCATCCCTTCGGTTGATGGGATACATTGGAGTTGATCTGCTGTCAAATGATTCATCCAGTTCAATAATAGACCCTTCATTACTTCTCAACTGGTGCCTACAGAGACAAGCAAATGATGGTGGGTTTCAAGGTAGGACTAACAAGCCAAGTGACACATGCTATGCATTTTGGATTGGAGCTGTCCTTAAACTTATAGGAGGCGATGCATTGATCGACAAAATGGCTCTGCGCAAATTTTTAATGAGTTGTCAGTCCAAGTATGGTGGATTCAGTAAATTCCCCGGACAATTACCAGATCTGTATCATTCATACTACGGTTACACGGCTTTTAGTCTCTTGGAAGAACAGGGCTTGAGTCCTCTATGTCCTGAGCTAGGTTTACCTCTTCTTGCAGCCCCGGGAATTTGA
Protein Sequence
- >AT2G39550.1
MSETAVSIDSDRSKSEEEDEEEYSPPVQSSPSANFEKDRHLMYLEMMYELLPYHYQSQEINRLTLAHFIISGLHFLGARDRVDKDVVAKWVLSFQAFPTNRVSLKDGEFYGFFGSRSSQFPIDENGDLKHNGSHLASTYCALAILKVIGHDLSTIDSKSLLISMINLQQDDGSFMPIHIGGETDLRFVYCAAAICYMLDSWSGMDKESAKNYILNCQSYDGGFGLIPGSESHGGATYCAIASLRLMGYIGVDLLSNDSSSSIIDPSLLLNWCLQRQANDGGFQGRTNKPSDTCYAFWIGAVLKLIGGDALIDKMALRKFLMSCQSKYGGFSKFPGQLPDLYHSYYGYTAFSLLEEQGLSPLCPELGLPLLAAPGI