Information report for AT2G39460
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0009001 — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- RPL23aA/rpl23aa; RPL23aB/rpl23ab — F1 progeny have pointed leaves. Non- allelic non complementation.
- SAIL_258_C12 — same as smb-3 single mutant
- SALK_091329 — WT phenotype. RT-PCR confirmed that RPL23aA and RPL23aB transcript levels are similar between WT and homozygotes.
- rpl23aa — Pleiotropic defects:pointed leaves, retarded root growth, and reduced plant size.Icompletely penetrant tricotyledon phenotype.
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , fruit , vascular leaf , flower , stem , plant sperm cell , pollen tube cell
Literature and News
- The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. DOI: 6834 ; PMID: 11598216
- Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome. DOI: 10.1104/pp.103.028241 ; PMID: 14500793
- SAGE analysis of transcriptome responses in Arabidopsis roots exposed to 2,4,6-trinitrotoluene. DOI: 10.1104/pp.103.028019 ; PMID: 14551330
- The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence. DOI: 10.1104/pp.103.030536 ; PMID: 14730065
- Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant. DOI: 10.1105/tpc.019000 ; PMID: 14973164
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- The maize root transcriptome by serial analysis of gene expression. DOI: 10.1104/pp.104.057638 ; PMID: 15965024
- Immunopurification of polyribosomal complexes of Arabidopsis for global analysis of gene expression. DOI: 10.1104/pp.105.059477 ; PMID: 15955926
- Transcriptional profiling implicates novel interactions between abiotic stress and hormonal responses in Thellungiella, a close relative of Arabidopsis. DOI: 10.1104/pp.105.070508 ; PMID: 16500996
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Differential regulation of the expression of two high-affinity sulfate transporters, SULTR1.1 and SULTR1.2, in Arabidopsis. DOI: 10.1104/pp.108.118612 ; PMID: 18400935
- Transcript profiling demonstrates absence of dosage compensation in Arabidopsis following loss of a single RPL23a paralog. DOI: 10.1007/s00425-008-0765-6 ; PMID: 18566829
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- The two ribosomal protein L23A genes are differentially transcribed in Arabidopsis thaliana. DOI: 10.1139/g05-007 ; PMID: 16121241
- Sequence context for transcription and translation of the Arabidopsis RPL23aA and RPL23aB paralogs. DOI: 10.1139/g11-029 ; PMID: 21883051
- Differential phosphorylation of ribosomal proteins in Arabidopsis thaliana plants during day and night. DOI: 10.1371/journal.pone.0029307 ; PMID: 22195043
- Charge versus sequence for nuclear/nucleolar localization of plant ribosomal proteins. DOI: 10.1007/s11103-013-0017-4 ; PMID: 23359052
- A proteomics approach identifies novel proteins involved in gravitropic signal transduction. DOI: 10.3732/ajb.1200339 ; PMID: 23281391
- Cytosolic targeting factor AKR2A captures chloroplast outer membrane-localized client proteins at the ribosome during translation. DOI: 10.1038/ncomms7843 ; PMID: 25880450
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Arabidopsis paralogous genes RPL23aA and RPL23aB encode functionally equivalent proteins. DOI: 10.1186/s12870-020-02672-1 ; PMID: 33032526
- Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. DOI: 10.1111/tpj.15667 ; PMID: 35000252
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
- The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. DOI: 6834 ; PMID: 11598216
- Establishment of Arabidopsis thaliana ribosomal protein RPL23A-1 as a functional homologue of Saccharomyces cerevisiae ribosomal protein L25. DOI: 10.1023/a:1011612329398 ; PMID: 11575722
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. DOI: 10.1091/mbc.e04-09-0791 ; PMID: 15496452
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Arabidopsis cell wall proteome defined using multidimensional protein identification technology. DOI: 10.1002/pmic.200500046 ; PMID: 16287169
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Arabidopsis ribosomal proteins RPL23aA and RPL23aB are differentially targeted to the nucleolus and are disparately required for normal development. DOI: 10.1104/pp.107.111799 ; PMID: 18322146
Gene Resources
- UniProt: A0A178VSK4
- EMBL: CACSHJ010000088, LR881467, LUHQ01000002
- AlphaFoldDB: A0A178VSK4
- EnsemblPlants: AT2G39460.1, AT2G39460.2
- Gramene: AT2G39460.1, AT2G39460.2
- KEGG: ath:AT2G39460
- Orthologous matrix: AFHIIRY
- ExpressionAtlas: AT2G39460
- InterPro: IPR001014, IPR005633, IPR012677
- PANTHER: PTHR11620
- SUPFAM: SSF54189
- PROSITE: PS00050
- Gene3D: 3.30.70.330
- OrthoDB: A0A178VSK4
- SWISS-MODEL: A0A178VSK4
Homologs
- Fragaria vesca mrna26696.1-v1.0-hybrid
Sequences
cDNA Sequence
- >AT2G39460.2
ACCTTTGAAAAATGGTAGAAGCCAGTTCAGCTAAAGCTTTCTTCTTCACAATTATCGTAAAATATTAGACATGTAGAGCAGGCTTGTTGTTCTCTTATTGTCAAGCGTAAGTAAATGATTATTGTTTAGTTTCGTGACCAATTGGTTTGTTTTTTGGTTAGCCATTGTTCGATTTGCTTTGGTTTGGTCAAAGATTGTATGCTTTCAAGTCAAACCAAAGCTGACTAAATTTTATTCTGTAATAATTTACTTTGGAATGGCAAAACCAAAGAAAGGTCATAGACACAAGAGAAGAAGCAAATATGTTTCTTACGCCAAAAGACACGTTTGTATGGTAAGACAAAAGACACGTTTGTATGTTTCTTACGCCAATACCATTACGTTAAAAATAAACTAGTAACTTAAATTTACGCTCACTTTCTATTTGGGTTTTACATGATGATTTTGGTCAAAGGCCTATTTACAATGTTGCAAGCCCATATTATCTTTTAAGTATCTTTTTGTGCAACCAAAAGAATCAGTGATCTTATGCTCATTTTCATTTTTTTCTAATGAAATTTTTCGTCACTTATGGCTTATGCGTCCGATGGACGATTATGGTAAAAGGCCCATTTATTCAATCCAAAGCTTACTGGGTTAGATGATGATTGTGGTAAAAAGGCCCATTATAGACCCAACTAAGTATCTTAGGGTTTCAGTTTCCACTATAAAACTTGTTGCGGCGTAAGTTAGGGTTTTGAGAATCAGCGGCTTCACCTCTCCAGATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGATACTACCAAGAAGGCTGATCCTAAGGCCAAGGCCTTGAAGGCGGCAAAGGCTGTGAAGTCTGGTCAAGCCTTCAAGAAGAAGGACAAAAAGATTAGGACCAAGGTCACCTTCCACAGGCCAAAGACTCTTACCAAGCCTAGAACTGGTAAGTACCCAAAAATCAGCGCTACTCCAAGGAACAAGTTGGATCACTACCAAATCCTTAAGTACCCACTCACCACTGAATCTGCGATGAAGAAGATTGAAGACAACAACACTCTTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTGCAGTTATAAAGACTATTGTGGTTTTGTCTCTTGTAGTCTCAGTTTTGCTTTTAAGATATTTATTATTACTATCATCTGGTAATTGTAGTATTTTGGAGCAAAAACGTTTTACAATACATTCATGTTGCAGTTTATTGTTGAATTCAAGTTCTATGTTTTTGACTTATCAAGATTCTCTTTTTAAAACTCACTAACTTATAAACTGTAAACATACAAATGCAG - >AT2G39460.1
ACCTTTGAAAAATGGTAGAAGCCAGTTCAGCTAAAGCTTTCTTCTTCACAATTATCGTAAAATATTAGACATGTAGAGCAGGCTTGTTGTTCTCTTATTGTCAAGCGTAAGTAAATGATTATTGTTTAGTTTCGTGACCAATTGGTTTGTTTTTTGGTTAGCCATTGTTCGATTTGCTTTGGTTTGGTCAAAGATTGTATGCTTTCAAGTCAAACCAAAGCTGACTAAATTTTATTCTGTAATAATTTACTTTGGAATGGCAAAACCAAAGAAAGGTCATAGACACAAGAGAAGAAGCAAATATGTTTCTTACGCCAAAAGACACGTTTGTATGGTAAGACAAAAGACACGTTTGTATGTTTCTTACGCCAATACCATTACGTTAAAAATAAACTAGTAACTTAAATTTACGCTCACTTTCTATTTGGGTTTTACATGATGATTTTGGTCAAAGGCCTATTTACAATGTTGCAAGCCCATATTATCTTTTAAGTATCTTTTTGTGCAACCAAAAGAATCAGTGATCTTATGCTCATTTTCATTTTTTTCTAATGAAATTTTTCGTCACTTATGGCTTATGCGTCCGATGGACGATTATGGTAAAAGGCCCATTTATTCAATCCAAAGCTTACTGGGTTAGATGATGATTGTGGTAAAAAGGCCCATTATAGACCCAACTAAGTATCTTAGGGTTTCAGTTTCCACTATAAAACTTGTTGCGGCGTAAGTTAGGGTTTTGAGAATCAGCGGCTTCACCTCTCCAGATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGATACTACCAAGAAGGCTGATCCTAAGGCCAAGGCCTTGAAGGCGGCAAAGGCTGTGAAGTCTGGTCAAGCCTTCAAGAAGAAGGACAAAAAGATTAGGACCAAGGTCACCTTCCACAGGCCAAAGACTCTTACCAAGCCTAGAACTGGTAAGTACCCAAAAATCAGCGCTACTCCAAGGAACAAGTTGGATCACTACCAAATCCTTAAGTACCCACTCACCACTGAATCTGCGATGAAGAAGATTGAAGACAACAACACTCTTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTGCAGTTATAAAGACTATTGTGGTTTTGTCTCTTGTAGTCTCAGTTTTGCTTTTAAGATATTTATTATTACTATCATCTGGTAATTGTAGTATTTTGGAGCAAAAACGTTTTACAATACATTCATGTTGCAGTTTATTGTTGAATTCAAGTTCTATGTTTTTGACTTATCAAGATTCTCTTTTTAAAACTCACTAACTTATAAACTGTAAACATACAAATGCAG
CDS Sequence
- >AT2G39460.2
ATGTCTCCGGCTAAAGTTGATACTACCAAGAAGGCTGATCCTAAGGCCAAGGCCTTGAAGGCGGCAAAGGCTGTGAAGTCTGGTCAAGCCTTCAAGAAGAAGGACAAAAAGATTAGGACCAAGGTCACCTTCCACAGGCCAAAGACTCTTACCAAGCCTAGAACTGGTAAGTACCCAAAAATCAGCGCTACTCCAAGGAACAAGTTGGATCACTACCAAATCCTTAAGTACCCACTCACCACTGAATCTGCGATGAAGAAGATTGAAGACAACAACACTCTTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAA - >AT2G39460.1
ATGTCTCCGGCTAAAGTTGATACTACCAAGAAGGCTGATCCTAAGGCCAAGGCCTTGAAGGCGGCAAAGGCTGTGAAGTCTGGTCAAGCCTTCAAGAAGAAGGACAAAAAGATTAGGACCAAGGTCACCTTCCACAGGCCAAAGACTCTTACCAAGCCTAGAACTGGTAAGTACCCAAAAATCAGCGCTACTCCAAGGAACAAGTTGGATCACTACCAAATCCTTAAGTACCCACTCACCACTGAATCTGCGATGAAGAAGATTGAAGACAACAACACTCTTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAA
Protein Sequence
- >AT2G39460.2
MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII - >AT2G39460.1
MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII