Information report for AT2G39250
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
Functional Keywords
Literature and News
- The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis. DOI: 10.1073/pnas.94.13.7076 ; PMID: 9192694
- Control of Arabidopsis flower and seed development by the homeotic gene APETALA2. DOI: 10.1105/tpc.6.9.1211 ; PMID: 7919989
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. DOI: 10.1105/tpc.7.2.173 ; PMID: 7756828
- Dissection of floral induction pathways using global expression analysis. DOI: 10.1242/dev.00842 ; PMID: 14573523
- Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: and shoot-specific genes. DOI: 10.1111/j.1365-313X.2004.02051.x ; PMID: 15078338
- Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. DOI: 10.1104/pp.104.047019 ; PMID: 15375205
- High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. DOI: 10.1111/j.1365-313X.2004.02281.x ; PMID: 15610358
- Antiquity of microRNAs and their targets in land plants. DOI: 10.1105/tpc.105.032185 ; PMID: 15849273
- Phylogeny and domain evolution in the APETALA2-like gene family. DOI: 10.1093/molbev/msj014 ; PMID: 16151182
- Genome-wide analysis of the ERF gene family in Arabidopsis and rice. DOI: 10.1104/pp.105.073783 ; PMID: 16407444
- AINTEGUMENTA-like (AIL) genes are expressed in young tissues and may specify meristematic or division-competent states. DOI: 10.1007/s11103-005-0955-6 ; PMID: 15988559
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- The putative miR172 target gene InAPETALA2-like is involved in the photoperiodic flower induction of Ipomoea nil. DOI: 10.1016/j.jplph.2009.05.011 ; PMID: 19560230
- miR172b controls the transition to autotrophic development inhibited by ABA in Arabidopsis. DOI: 10.1371/journal.pone.0064770 ; PMID: 23717657
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- Overexpression of soybean miR172c confers tolerance to water deficit and salt stress, but increases ABA sensitivity in transgenic Arabidopsis thaliana. DOI: 10.1093/jxb/erv450 ; PMID: 26466661
- SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana. DOI: 10.1093/jxb/erx423 ; PMID: 29309650
- miR172 Regulates WUS during Somatic Embryogenesis in Arabidopsis via AP2. DOI: 10.3390/cells11040718 ; PMID: 35203367
- The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis. DOI: 10.1073/pnas.94.13.7076 ; PMID: 9192694
- Control of Arabidopsis flower and seed development by the homeotic gene APETALA2. DOI: 10.1105/tpc.6.9.1211 ; PMID: 7919989
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. DOI: 10.1105/tpc.7.2.173 ; PMID: 7756828
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Gene Resources
- UniProt: A0A1P8B311
- EMBL: CP002685
- AlphaFoldDB: A0A1P8B311
- EnsemblPlants: AT2G39250.2
- Gramene: AT2G39250.2
- Orthologous matrix: PFIAMNN
- ExpressionAtlas: AT2G39250
- InterPro: IPR001471, IPR016177, IPR036955
- PANTHER: PTHR32467, PTHR32467:SF177
- SUPFAM: SSF54171
- PROSITE: PS51032
- Gene3D: 3.30.730.10
- SWISS-MODEL: A0A1P8B311
- Conserved Domain Database: cd00018
Homologs
- Brassica napus BnaC06G0192800ZS, GSBRNA2T00124534001
- Brassica oleracea XP_013590878.1, Bo6g068410
- Raphanus raphanistrum RrC4601_p1
Sequences
cDNA Sequence
- >AT2G39250.2
AAATCAGTGTGTAGACAATCGCACTGAACAACACGTCCCACGTTCTTTTTCTTCCCTGTTTTAGATAGACTCTTAGAGTCTCTCTAGAGTCACCGGAACAATCACAAAAGCGACGACATATTACTCATTCCTACAAATACTCATGTTGGACCTCAACCTCGGAATCTTGTCGACACACAACGAAGATGAAGATTGCAAAGTACCAACTTCCATCTTCATTCAAGAAGAAGATTCCATTAATCCCTCAAACGACAACTTGTCTTTGATTACATTTGGAATCCTTAAACGAAACGTCGAAATCCTTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTTCGGAAAATGAACTCTCCGGCCCCGGAAATGAGTGGTTGGATCTTTCGTCGATGCAAAGAAATAAACAAGAAACGTTGGTGATGAAGAAAAAAAGTCGACGTGGCCCAAGATCAAGAAGCTCTCATTATCGTGGCGTTACCTTTTACCGTCGAACCGGCCGTTGGGAATCTCATATTTGGGACTGTGGAAAACAAGTTTATTTGGGTGGTTTCGACACAGCCTACACAGCCGCAAGAGCGTACGACCGAGCTGCTATCAGATTCCGGGGACTCCAAGCAGATATCAACTTTATCGTGGATGATTACAAACAAGACATTGAAAAGATGAAGAATTTAAGCAAAGAAGAGTTTGTGCAATCTCTTAGACGAGCGAGTGCAAGCTTAGCAAGAGGAGGTTCTAAATACAAAAACACCCATATGAGAAATGATCACATCCATCTCTTCCAAAACAGGTTCGATTCGTTACTCTTCTCGCGGGTACAATTTCATTCACTATTAACCGTGACCAGTTGATTCCTATCGCGTATATGATTCACACATATAATGCATACGATTTGTAAAAGTGTTTGTATGAATACTCATAGGGGATTGAATGCAGCAGCAGCAAAATGCAATGAGATAAGAAAGATGGAAGGGGATATTAAGTTGGGTGCCCATAGTAAAGGAAATGAGCACAACGATCTCGAGCTAAGTCTTGGGATATCTTCATCGTCAAAAGTTAGAATTTTGGAACCAGCAGATTATTACATGGGTTTGAATCGATCGGTGACGAGTTTGCATGGGAAGCCGTTGCCGGGATATCTACCGATCACAGAAATTAAACCGTTAAAGACAGTTGTAGCATCATCAGGATTCCCTTTCATTACCATGATCAATCCTTCTTCTTTGTCCTTATCTTGTTTTGATCCATGAGGTGATCACTATTTACTTTTAAAATTTTCCCCTTTTTATTGATAATCTATTGAATGACGGAATGATTATGTGACTTATATCTTTTTATAAACCATATTCTTGTGGAATCAGGAATTTTGTGCCAATAAAAAAAGACAAAGAACCATCATGTACTATGTTGTCAACGATGATAATTC - >AT2G39250.1
AAATCAGTGTGTAGACAATCGCACTGAACAACACGTCCCACGTTCTTTTTCTTCCCTGTTTTAGATAGACTCTTAGAGTCTCTCTAGAGTCACCGGAACAATCACAAAAGCGACGACATATTACTCATTCCTACAAATACTCATGTTGGACCTCAACCTCGGAATCTTGTCGACACACAACGAAGATGAAGATTGCAAAGTACCAACTTCCATCTTCATTCAAGAAGAAGATTCCATTAATCCCTCAAACGACAACTTGTCTTTGATTACATTTGGAATCCTTAAACGAAACGTCGAAATCCTTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTTCGGAAAATGAACTCTCCGGCCCCGGAAATGAGTGGTTGGATCTTTCGTCGATGCAAAGAAATAAACAAGAAACGTTGGTGATGAAGAAAAAAAGTCGACGTGGCCCAAGATCAAGAAGCTCTCATTATCGTGGCGTTACCTTTTACCGTCGAACCGGCCGTTGGGAATCTCATATTTGGGACTGTGGAAAACAAGTTTATTTGGGTGGTTTCGACACAGCCTACACAGCCGCAAGAGCGTACGACCGAGCTGCTATCAGATTCCGGGGACTCCAAGCAGATATCAACTTTATCGTGGATGATTACAAACAAGACATTGAAAAGATGAAGAATTTAAGCAAAGAAGAGTTTGTGCAATCTCTTAGACGAGCGAGTGCAAGCTTAGCAAGAGGAGGTTCTAAATACAAAAACACCCATATGAGAAATGATCACATCCATCTCTTCCAAAACAGGTTCGATTCGTTACTCTTCTCGCGGGTACAATTTCATTCACTATTAACCGTGACCAGTTGATTCCTATCGCGTATATGATTCACACATATAATGCATACGATTTGTAAAAGTGTTTGTATGAATACTCATAGGGGATTGAATGCAGCAGCAGCAAAATGCAATGAGATAAGAAAGATGGAAGGGGATATTAAGTTGGGTGCCCATAGTAAAGGAAATGAGCACAACGATCTCGAGCTAAGTCTTGGGATATCTTCATCGTCAAAAGTTAGAATTTTGGAACCAGCAGATTATTACATGGGTTTGAATCGATCGGTGACGAGTTTGCATGGGAAGCCGTTGCCGGGATATCTACCGATCACAGAAATTAAACCGTTAAAGACAGTTGTAGCATCATCAGGATTCCCTTTCATTACCATGATCAATCCTTCTTCTTTGTCCTTATCTTGTTTTGATCCATGAGGTGATCACTATTTACTTTTAAAATTTTCCCCTTTTTATTGATAATCTATTGAATGACGGAATGATTATGTGACTTATATCTTTTTATAAACCATATTCTTGTGGAATCAGGAATTTTGTGCCAATAAAAAAAGACAAAGAACCATCATGTACTATGTTGTCAACGATGATAATTC
CDS Sequence
- >AT2G39250.2
ATGTTGGACCTCAACCTCGGAATCTTGTCGACACACAACGAAGATGAAGATTGCAAAGTACCAACTTCCATCTTCATTCAAGAAGAAGATTCCATTAATCCCTCAAACGACAACTTGTCTTTGATTACATTTGGAATCCTTAAACGAAACGTCGAAATCCTTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTTCGGAAAATGAACTCTCCGGCCCCGGAAATGAGTGGTTGGATCTTTCGTCGATGCAAAGAAATAAACAAGAAACGTTGGTGATGAAGAAAAAAAGTCGACGTGGCCCAAGATCAAGAAGCTCTCATTATCGTGGCGTTACCTTTTACCGTCGAACCGGCCGTTGGGAATCTCATATTTGGGACTGTGGAAAACAAGTTTATTTGGGTGGTTTCGACACAGCCTACACAGCCGCAAGAGCGTACGACCGAGCTGCTATCAGATTCCGGGGACTCCAAGCAGATATCAACTTTATCGTGGATGATTACAAACAAGACATTGAAAAGATGAAGAATTTAAGCAAAGAAGAGTTTGTGCAATCTCTTAGACGAGCGAGTGCAAGCTTAGCAAGAGGAGGTTCTAAATACAAAAACACCCATATGAGAAATGATCACATCCATCTCTTCCAAAACAGGTTCGATTCGTTACTCTTCTCGCGGGTACAATTTCATTCACTATTAACCGTGACCAGTTGA - >AT2G39250.1
ATGTTGGACCTCAACCTCGGAATCTTGTCGACACACAACGAAGATGAAGATTGCAAAGTACCAACTTCCATCTTCATTCAAGAAGAAGATTCCATTAATCCCTCAAACGACAACTTGTCTTTGATTACATTTGGAATCCTTAAACGAAACGTCGAAATCCTTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTTCGGAAAATGAACTCTCCGGCCCCGGAAATGAGTGGTTGGATCTTTCGTCGATGCAAAGAAATAAACAAGAAACGTTGGTGATGAAGAAAAAAAGTCGACGTGGCCCAAGATCAAGAAGCTCTCATTATCGTGGCGTTACCTTTTACCGTCGAACCGGCCGTTGGGAATCTCATATTTGGGACTGTGGAAAACAAGTTTATTTGGGTGGTTTCGACACAGCCTACACAGCCGCAAGAGCGTACGACCGAGCTGCTATCAGATTCCGGGGACTCCAAGCAGATATCAACTTTATCGTGGATGATTACAAACAAGACATTGAAAAGATGAAGAATTTAAGCAAAGAAGAGTTTGTGCAATCTCTTAGACGAGCGAGTGCAAGCTTAGCAAGAGGAGGTTCTAAATACAAAAACACCCATATGAGAAATGATCACATCCATCTCTTCCAAAACAGGTTCGATTCGTTACTCTTCTCGCGGGTACAATTTCATTCACTATTAACCGTGACCAGTTGA
Protein Sequence
- >AT2G39250.2
MLDLNLGILSTHNEDEDCKVPTSIFIQEEDSINPSNDNLSLITFGILKRNVEILPPPPPPPPPPPPSENELSGPGNEWLDLSSMQRNKQETLVMKKKSRRGPRSRSSHYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYTAARAYDRAAIRFRGLQADINFIVDDYKQDIEKMKNLSKEEFVQSLRRASASLARGGSKYKNTHMRNDHIHLFQNRFDSLLFSRVQFHSLLTVTS - >AT2G39250.1
MLDLNLGILSTHNEDEDCKVPTSIFIQEEDSINPSNDNLSLITFGILKRNVEILPPPPPPPPPPPPSENELSGPGNEWLDLSSMQRNKQETLVMKKKSRRGPRSRSSHYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYTAARAYDRAAIRFRGLQADINFIVDDYKQDIEKMKNLSKEEFVQSLRRASASLARGGSKYKNTHMRNDHIHLFQNRFDSLLFSRVQFHSLLTVTS