AT2G39140

Gene Details

Gene ID: AT2G39140
Gene Symbol: PDE328, RSUA1, SVR1
Gene Name: PIGMENT DEFECTIVE 328, SUPPRESSOR OF VARIEGATION 1
Description: pseudouridine synthase family protein;(source:Araport11)
TAIR Accession: locus:2056108
Genome: Araport11_genome_release
Species: Arabidopsis thaliana

Functional Descriptions

PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
PO:0000014 — rosette leaf — hoja en roseta (Spanish, exact), ロゼット葉 (Japanese, exact)
PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)

GO:0000488 — involved in — maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
GO:0003729 — enables — mRNA binding
GO:0001522 — involved in — pseudouridine synthesis
GO:0000489 — involved in — maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
GO:0009507 — is active in — chloroplast
GO:0000488 — acts upstream of or within — maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
GO:0009982 — enables — pseudouridine synthase activity
GO:0000489 — acts upstream of or within — maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
GO:0032544 — acts upstream of or within — plastid translation

SALK_013085 HOMOZYGOUS — Yellow-green and significantly smaller than WT.
svr1-1 — Similar to var2-5; svr1-1 double mutant. Not variegated. Smaller than WT.
var2-5, svr1-2 — Variegation caused by var2 single mutant is suppressed.
var2-5;svr1-1 — WT phenotype. The single var2 variegated phenotype is suppresed.

Functional Keywords

Literature and News

Gene Resources

Homologs

Sequences

cDNA Sequence

>AT2G39140.1
TTTTCATAAAAATCCCTAAAATATCCGAATTTATCGGATAAACCCAAACCCCCTATCGGGAAAACCCAACACACCGTCTCTCTCTCACTCTCACTTCCCATCGGCGAAAATGGCGTCGGTGGCGGCATCATCGTCGATATCATTCGCTGCATCATTCCTCAAAATCAAAGCATTCCCTCTCTCCCCTCGCTTCTTCCCCATCCGTACACTCCGTTGCTCTGTCTCCTCCTCCTCCTCTGAGCCCATTGAATTCGACATCTCCTTCGCTCCTCCCAAACCCAAACCCTCCTCCACTCACGGCGGCGTCACCCCTCAACAACTCTTCATCCCTTGGATCGTCCGTAGTGATGACGGCACTCTCAAACTCCAATCTCAACCTCCTGCTCGTTTAATCCACAACCTCGCCATCGATGCCACTACTCAAAACCCTAAGAAGAAAGATAAATCTAAGAAGAAACAACCTCAAGCTACCTCCTCTTCCTCCGCCACCACCACCGCCTCATCTCCAGCTTCACACTCAGAGGTAAAGCCAAAGCTATCCAAAGCGGCGCGTAGGTTTTACAATGAGAATTTTAAAGAACAACCTCAACGTTTAAGCAAAGTTCTCGCTGCTGCTGGAGTGGCATCAAGAAGAACCTCTGAAGAACTTATTTTTGATGGCAAGGTTACTGTTAATGGTATTCTCTGCAACACTCCACAGACTCGAGTTGATCCATCAAGAGACATTATTTATGTTAATGGAAATCGTATTCCTAAGAAACTTCCTCCAAAGGTTTATTTTGCTCTGAACAAGCCTAAAGGATATATTTGTTCTTCCGGAGAGAAAGAGATCAAATCTGCTATTAGTTTGTTTGACGAGTACTTGTCCTCTTGGGATAAAAGGAATCCGGGGACTCCCAAACCTCGCCTTTTTACTGTTGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATGGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAAAGAATATATTACCACGGTTGTCGGTGATATACACAAACGACACTTAATGGCTATCAGTGAAGGCACAATGGTGGAAGGAGTCCACTGTGTCCCAGATTCAGTTGAGTTGATGCCAAAGCAGCATGATATACCAAGAGCAAGGCTGCGTATAGTGGTTCACGAAGGAAGAAATCATGAAGTCAGGGAATTAGTGAAAAATGCTGGGCTTGAGGTTCATTCATTGAAGCGTGTCCGTATAGGTGGATTCAGACTTCCTTCAGATCTTGGGCTAGGGAAGCATGTGGAATTGAAGCAGAGCGAGCTAAAGGCATTGGGTTGGAAGAATTGAAGATGTCCAATTCATCAAACAATTAAAAACCTCTGTTACCTTTAGTTAAAACAGAATATAATTGTTTAGATTATAGTATATCTTTATCTTAGTTTTTTTTTTTGTCAAAGATCTTTATCTTAGTTAGGAATACTTTTTTGTTGTAAGTAGTTTATTGATATTCATTATGAATTTATTAATAAACTAATCTTTTGTTTTCTTGGAACTTATCAAAACCTAAACAAAAATTATGAATGACGGATTCATTTATTC
>AT2G39140.2
TTTTCATAAAAATCCCTAAAATATCCGAATTTATCGGATAAACCCAAACCCCCTATCGGGAAAACCCAACACACCGTCTCTCTCTCACTCTCACTTCCCATCGGCGAAAATGGCGTCGGTGGCGGCATCATCGTCGATATCATTCGCTGCATCATTCCTCAAAATCAAAGCATTCCCTCTCTCCCCTCGCTTCTTCCCCATCCGTACACTCCGTTGCTCTGTCTCCTCCTCCTCCTCTGAGCCCATTGAATTCGACATCTCCTTCGCTCCTCCCAAACCCAAACCCTCCTCCACTCACGGCGGCGTCACCCCTCAACAACTCTTCATCCCTTGGATCGTCCGTAGTGATGACGGCACTCTCAAACTCCAATCTCAACCTCCTGCTCGTTTAATCCACAACCTCGCCATCGATGCCACTACTCAAAACCCTAAGAAGAAAGATAAATCTAAGAAGAAACAACCTCAAGCTACCTCCTCTTCCTCCGCCACCACCACCGCCTCATCTCCAGCTTCACACTCAGAGGTAAAGCCAAAGCTATCCAAAGCGGCGCGTAGGTTTTACAATGAGAATTTTAAAGAACAACCTCAACGTTTAAGCAAAGTTCTCGCTGCTGCTGGAGTGGCATCAAGAAGAACCTCTGAAGAACTTATTTTTGATGGCAAGGTTACTGTTAATGGTATTCTCTGCAACACTCCACAGACTCGAGTTGATCCATCAAGAGACATTATTTATGTTAATGGAAATCGTATTCCTAAGAAACTTCCTCCAAAGGTTTATTTTGCTCTGAACAAGCCTAAAGGATATATTTGTTCTTCCGGAGAGAAAGAGATCAAATCTGCTATTAGTTTGTTTGACGAGTACTTGTCCTCTTGGGATAAAAGGAATCCGGGGACTCCCAAACCTCGCCTTTTTACTGTTGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATGGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAAAGAATATATTACCACGGTTGTCGGTGATATACACAAACGACACTTAATGGCTATCAGTGAAGGCACAATGGTGGAAGGAGTCCACTGTGTCCCAGATTCAGTTGAGTTGATGCCAAAGCAGCATGATATACCAAGAGCAAGGCTGCGTATAGTGGTTCACGAAGGAAGAAATCATGAAGTCAGGGAATTAGTGAAAAATGCTGGGCTTGAGGTTCATTCATTGAAGCGTGTCCGTATAGGTGGATTCAGACTTCCTTCAGATCTTGGGCTAGGGAAGCATGTGGAATTGAAGCAGAGCGAGCTAAAGGCATTGGGTTGGAAGAATTGAAGATGTCCAATTCATCAAACAATTAAAAACCTCTGTTACCTTTAGTTAAAACAGAATATAATTGTTTAGATTATAGTATATCTTTATCTTAGTTTTTTTTTTTGTCAAAGATCTTTATCTTAGTTAGGAATACTTTTTTGTTGTAAGTAGTTTATTGATATTCATTATGAATTTATTAATAAACTAATCTTTTGTTTTCTTGGAACTTATCAAAACCTAAACAAAAATTATGAATGACGGATTCATTTATTC

CDS Sequence

>AT2G39140.1
ATGGCGTCGGTGGCGGCATCATCGTCGATATCATTCGCTGCATCATTCCTCAAAATCAAAGCATTCCCTCTCTCCCCTCGCTTCTTCCCCATCCGTACACTCCGTTGCTCTGTCTCCTCCTCCTCCTCTGAGCCCATTGAATTCGACATCTCCTTCGCTCCTCCCAAACCCAAACCCTCCTCCACTCACGGCGGCGTCACCCCTCAACAACTCTTCATCCCTTGGATCGTCCGTAGTGATGACGGCACTCTCAAACTCCAATCTCAACCTCCTGCTCGTTTAATCCACAACCTCGCCATCGATGCCACTACTCAAAACCCTAAGAAGAAAGATAAATCTAAGAAGAAACAACCTCAAGCTACCTCCTCTTCCTCCGCCACCACCACCGCCTCATCTCCAGCTTCACACTCAGAGGTAAAGCCAAAGCTATCCAAAGCGGCGCGTAGGTTTTACAATGAGAATTTTAAAGAACAACCTCAACGTTTAAGCAAAGTTCTCGCTGCTGCTGGAGTGGCATCAAGAAGAACCTCTGAAGAACTTATTTTTGATGGCAAGGTTACTGTTAATGGTATTCTCTGCAACACTCCACAGACTCGAGTTGATCCATCAAGAGACATTATTTATGTTAATGGAAATCGTATTCCTAAGAAACTTCCTCCAAAGGTTTATTTTGCTCTGAACAAGCCTAAAGGATATATTTGTTCTTCCGGAGAGAAAGAGATCAAATCTGCTATTAGTTTGTTTGACGAGTACTTGTCCTCTTGGGATAAAAGGAATCCGGGGACTCCCAAACCTCGCCTTTTTACTGTTGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATGGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAAAGAATATATTACCACGGTTGTCGGTGATATACACAAACGACACTTAATGGCTATCAGTGAAGGCACAATGGTGGAAGGAGTCCACTGTGTCCCAGATTCAGTTGAGTTGATGCCAAAGCAGCATGATATACCAAGAGCAAGGCTGCGTATAGTGGTTCACGAAGGAAGAAATCATGAAGTCAGGGAATTAGTGAAAAATGCTGGGCTTGAGGTTCATTCATTGAAGCGTGTCCGTATAGGTGGATTCAGACTTCCTTCAGATCTTGGGCTAGGGAAGCATGTGGAATTGAAGCAGAGCGAGCTAAAGGCATTGGGTTGGAAGAATTGA
>AT2G39140.2
ATGGCGTCGGTGGCGGCATCATCGTCGATATCATTCGCTGCATCATTCCTCAAAATCAAAGCATTCCCTCTCTCCCCTCGCTTCTTCCCCATCCGTACACTCCGTTGCTCTGTCTCCTCCTCCTCCTCTGAGCCCATTGAATTCGACATCTCCTTCGCTCCTCCCAAACCCAAACCCTCCTCCACTCACGGCGGCGTCACCCCTCAACAACTCTTCATCCCTTGGATCGTCCGTAGTGATGACGGCACTCTCAAACTCCAATCTCAACCTCCTGCTCGTTTAATCCACAACCTCGCCATCGATGCCACTACTCAAAACCCTAAGAAGAAAGATAAATCTAAGAAGAAACAACCTCAAGCTACCTCCTCTTCCTCCGCCACCACCACCGCCTCATCTCCAGCTTCACACTCAGAGGTAAAGCCAAAGCTATCCAAAGCGGCGCGTAGGTTTTACAATGAGAATTTTAAAGAACAACCTCAACGTTTAAGCAAAGTTCTCGCTGCTGCTGGAGTGGCATCAAGAAGAACCTCTGAAGAACTTATTTTTGATGGCAAGGTTACTGTTAATGGTATTCTCTGCAACACTCCACAGACTCGAGTTGATCCATCAAGAGACATTATTTATGTTAATGGAAATCGTATTCCTAAGAAACTTCCTCCAAAGGTTTATTTTGCTCTGAACAAGCCTAAAGGATATATTTGTTCTTCCGGAGAGAAAGAGATCAAATCTGCTATTAGTTTGTTTGACGAGTACTTGTCCTCTTGGGATAAAAGGAATCCGGGGACTCCCAAACCTCGCCTTTTTACTGTTGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATGGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAAAGAATATATTACCACGGTTGTCGGTGATATACACAAACGACACTTAATGGCTATCAGTGAAGGCACAATGGTGGAAGGAGTCCACTGTGTCCCAGATTCAGTTGAGTTGATGCCAAAGCAGCATGATATACCAAGAGCAAGGCTGCGTATAGTGGTTCACGAAGGAAGAAATCATGAAGTCAGGGAATTAGTGAAAAATGCTGGGCTTGAGGTTCATTCATTGAAGCGTGTCCGTATAGGTGGATTCAGACTTCCTTCAGATCTTGGGCTAGGGAAGCATGTGGAATTGAAGCAGAGCGAGCTAAAGGCATTGGGTTGGAAGAATTGA

Protein Sequence

>AT2G39140.1
MASVAASSSISFAASFLKIKAFPLSPRFFPIRTLRCSVSSSSSEPIEFDISFAPPKPKPSSTHGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALGWKN
>AT2G39140.2
MASVAASSSISFAASFLKIKAFPLSPRFFPIRTLRCSVSSSSSEPIEFDISFAPPKPKPSSTHGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALGWKN