Information report for AT2G39080
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
Literature and News
- Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. DOI: 10.1105/tpc.010304 ; PMID: 11826309
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2004.02090.x ; PMID: 15144383
- Bicistronic and fused monocistronic transcripts are derived from adjacent loci in the Arabidopsis genome. DOI: 10.1261/rna.7114505 ; PMID: 15659355
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Molecular foundations of reproductive lethality in Arabidopsis thaliana. DOI: 10.1371/journal.pone.0028398 ; PMID: 22164284
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: Q8VZB1
- EMBL: AY065091, AY114557, CP002685
- AlphaFoldDB: Q8VZB1
- EnsemblPlants: AT2G39080.1
- Gramene: AT2G39080.1
- KEGG: ath:AT2G39080
- Orthologous matrix: MATPIQA
Homologs
- Oryza sativa PHD1
Sequences
cDNA Sequence
- >AT2G39080.1
GGACGTCGTGACGTGTAAATACGCCATTGGTTAAAACACACCAAGAGAACCCATTACCAAAGTCTCACGGAGAATCCCATCTCTTTCCCCACGCCAACTCAATCTTTTTCGTCGTCAAAAGCCAAAGCTTTTTGCTTTTTTGTCTTAATGGGTTTCATCTCTTGCATCTCATTTCCGACGATCAATTCAAGAATTCTATCGACTCACCACTTTTCCAAGCACTCGACTTCAGCGTCTTCTTCATATTCACTTAAGTTTGCTTTGAGACGTCAGGAGGATAAACCCAAAGTCTCGTTTTTTCTTCCATTAACGTCTTCGTTAATGGCGACCCCTATTCAAGCCTCTTCTTCCTCCACCATTGGTGAGACCAGTGATGGCTTGAAGGTCCAGTCTCATGTTTCAATTGGAGCAAACGATCTGCTGATTGTTGGACCGGGTGTTCTTGGACGCTTAGTTGCAGAACAGTGGAGACAGGAACATCCAGAGTCTCAAATCTTTGGGCAGACAGTAACAACAAATCATCATGGTGAGTTGGAGAATTTGGGTATCAAACCATCTCTTAAAGGAACCGAATATGGGGGAAAGTTCTCCTATGTGATCTTTTGTGCTCCACCATCACAAAGCGCTGATTATGCTGGTGAAGTCAGGAATGCAGCATCAAACTGGAATGGCGAAGGATCATTCTTATTCACATCTAGTTCTGCACCTTATGATTGCTTTGATAACGGAGAATGCAACGAGGATTCTCCAGTAGTGCCACTGGGAAAGAGTCCAAGAACTGATGTGCTTTTGAAAGCTGAAAAAGTAGTGTTGGAATGTGGAGGGACTGTCCTTAGACTAGCAGGGCTTTACACAGAAACTAGAGGTGCACATACTTACTGGTTGAGTAAGGAGACAATTGATGCTCGTCCTGATCATATTCTAAATCTCATACACTATGAGGATGCAGCATCGCTGGCAGTTGCAATCATGAAGAAGAAAGCCGGTGCTCGGATTTTCTTGGGTTGTGACAACCATCCTTTGTCAAGGCAAGAGGTGATGGACCTGATGGCTCAAAGCGGAAAATTTGATAAGAAGTTCAAAGGTTTTACAAGCACCAGTGGTCCTTTAGGGAAGAAGCTGAACAACTCTAAGACACGAGCGGAGATAGGATGGGAGCCGAAGTATCCAAGCTTTGCCCAATTTTTTGGAGTATCGACATAATATTTTTACTTGGATTGATTAAGAATGTCTCTAGCGCTGAAGAATCCAATAATGTGAAGCATTATTTATGTTTGGTACAAACAAACTCATGTATCCTCTTGAGTGATCAAACAGCTGAAATTTTCAGAATTCTTCATAAAGCTCCATGGTTCATATATATAAATCATATTTTGTTAATTTACT
CDS Sequence
- >AT2G39080.1
ATGGGTTTCATCTCTTGCATCTCATTTCCGACGATCAATTCAAGAATTCTATCGACTCACCACTTTTCCAAGCACTCGACTTCAGCGTCTTCTTCATATTCACTTAAGTTTGCTTTGAGACGTCAGGAGGATAAACCCAAAGTCTCGTTTTTTCTTCCATTAACGTCTTCGTTAATGGCGACCCCTATTCAAGCCTCTTCTTCCTCCACCATTGGTGAGACCAGTGATGGCTTGAAGGTCCAGTCTCATGTTTCAATTGGAGCAAACGATCTGCTGATTGTTGGACCGGGTGTTCTTGGACGCTTAGTTGCAGAACAGTGGAGACAGGAACATCCAGAGTCTCAAATCTTTGGGCAGACAGTAACAACAAATCATCATGGTGAGTTGGAGAATTTGGGTATCAAACCATCTCTTAAAGGAACCGAATATGGGGGAAAGTTCTCCTATGTGATCTTTTGTGCTCCACCATCACAAAGCGCTGATTATGCTGGTGAAGTCAGGAATGCAGCATCAAACTGGAATGGCGAAGGATCATTCTTATTCACATCTAGTTCTGCACCTTATGATTGCTTTGATAACGGAGAATGCAACGAGGATTCTCCAGTAGTGCCACTGGGAAAGAGTCCAAGAACTGATGTGCTTTTGAAAGCTGAAAAAGTAGTGTTGGAATGTGGAGGGACTGTCCTTAGACTAGCAGGGCTTTACACAGAAACTAGAGGTGCACATACTTACTGGTTGAGTAAGGAGACAATTGATGCTCGTCCTGATCATATTCTAAATCTCATACACTATGAGGATGCAGCATCGCTGGCAGTTGCAATCATGAAGAAGAAAGCCGGTGCTCGGATTTTCTTGGGTTGTGACAACCATCCTTTGTCAAGGCAAGAGGTGATGGACCTGATGGCTCAAAGCGGAAAATTTGATAAGAAGTTCAAAGGTTTTACAAGCACCAGTGGTCCTTTAGGGAAGAAGCTGAACAACTCTAAGACACGAGCGGAGATAGGATGGGAGCCGAAGTATCCAAGCTTTGCCCAATTTTTTGGAGTATCGACATAA
Protein Sequence
- >AT2G39080.1
MGFISCISFPTINSRILSTHHFSKHSTSASSSYSLKFALRRQEDKPKVSFFLPLTSSLMATPIQASSSSTIGETSDGLKVQSHVSIGANDLLIVGPGVLGRLVAEQWRQEHPESQIFGQTVTTNHHGELENLGIKPSLKGTEYGGKFSYVIFCAPPSQSADYAGEVRNAASNWNGEGSFLFTSSSAPYDCFDNGECNEDSPVVPLGKSPRTDVLLKAEKVVLECGGTVLRLAGLYTETRGAHTYWLSKETIDARPDHILNLIHYEDAASLAVAIMKKKAGARIFLGCDNHPLSRQEVMDLMAQSGKFDKKFKGFTSTSGPLGKKLNNSKTRAEIGWEPKYPSFAQFFGVST