Information report for AT2G38610
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0005634 — located in — nucleus
- GO:0009751 — involved in — response to salicylic acid
- GO:0048024 — involved in — regulation of mRNA splicing, via spliceosome
- GO:0005515 — enables — protein binding
- GO:0009737 — involved in — response to abscisic acid
- GO:0005886 — located in — plasma membrane
- GO:0003729 — enables — mRNA binding
- GO:0005634 — is active in — nucleus
- GO:0005737 — located in — cytoplasm
- SALK_056508 — 4-day-old seed germination rates higher under ABA and SA treatments.
Functional Keywords
Literature and News
- Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. DOI: 10.1093/nar/30.3.623 ; PMID: 11809873
- Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis. DOI: 10.1104/pp.103.034736 ; PMID: 15047898
- Differentiation of Arabidopsis guard cells: analysis of the networks incorporating the basic helix-loop-helix transcription factor, FAMA. DOI: 10.1104/pp.110.167718 ; PMID: 21245191
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Genome-Wide Characterization and Expression Analysis of KH Family Genes Response to ABA and SA in Arabidopsis thaliana. DOI: 10.3390/ijms23010511 ; PMID: 35008936
Gene Resources
- UniProt: A0A178W1F1
- EMBL: CACRSJ010000105, CACSHJ010000088, LUHQ01000002
- AlphaFoldDB: A0A178W1F1
- EnsemblPlants: AT2G38610.1, AT2G38610.2
- Gramene: AT2G38610.1, AT2G38610.2
- KEGG: ath:AT2G38610
- Orthologous matrix: PMASTNI
- ExpressionAtlas: AT2G38610
- InterPro: IPR004087, IPR032377, IPR036612
- PANTHER: PTHR11208, PTHR11208:SF153
- SUPFAM: SSF54791
- Gene3D: 3.30.1370.10
- OrthoDB: A0A178W1F1
- SWISS-MODEL: A0A178W1F1
Homologs
- Brassica napus BnaC04G0079700ZS, BnaA03G0186100ZS, BnaC05G0510400ZS
- Brassica oleracea Bo4g027130
- Capsicum annuum T459_23685
- Juglans regia Jr03_27350, Jr04_00290
- Manihot esculenta MANES_09G121700, MANES_08G168100
- Nicotiana attenuata A4A49_22976
- Populus trichocarpa POPTR_006G111400v3, POPTR_016G140800v3
- Prunus avium Pav_sc0002318.1_g510.1.mk
- Prunus persica PRUPE_6G297700
- Rosa chinensis RchiOBHm_Chr3g0459891
- Sesamum indicum SIN_1010970
- Solanum lycopersicum Solyc09g031930.3
Sequences
cDNA Sequence
- >AT2G38610.1
AACTTTTAATCAAAGAAACAAAAAAAAAAAGAGATTTTTCAGACAGAAGAAAAAAAGAAAAAAAAAGTCTGGCGTCTTCTGCAGAATTCACATTTGGTGTCTGCTGCTGGCGTTGAGAAGAAGAAGAAGAAGAAAGGCACACAAAATAACCCATGTCTGGTTTATACAATAACTCATCTTACTTCTCTCCTGCTCGAGCTGCTTCTCCTCAGATTAGAAGCACTCCTGAGATCGACAGCTCTCAGTACTTGACGGAGCTTCTCGCTGAACATCAAAAGCTTACTCCTTTTATGCAGGTCCTACCCATATGTAGCCGTCTATTGAATCAAGAGATGTTCAGGGTCTCTGGAATGATGTCTAACCAAGGATTTGGTGATTTTGATAGACTTCGACACAGAAGTCCCAGCCCTATGGCTTCTTCTAATCTTATGTCTAATGTCTCTAATACCGGGTTAGGAGGCTGGAACGGCCTCTCTCAGGAGAGACTTAGTGGAACACCTGGAATGACAATGGATTGGCAAGGTGCACCTGGAAGCCCCAGTTCATACACCGTCAAAAGGATATTGCGTCTGGAGATTCCTGTAGATAACTATCCTAATTTCAATTTTGTTGGACGACTTCTCGGCCCTAGAGGCAACTCGTTAAAACGCGTTGAAGCTACCACCGGTTGCCGAGTATTCATCAGAGGGAAAGGGTCAATCAAGGATCCCGAAAAGGAAGATAAATTAAGGGGAAGACCTGGCTATGAACACTTGAATGAGCAGCTTCACATCTTAATAGAGGCAGATCTTCCAGCTAGTATTGTGGAGATACGTCTGCGACAAGCTCAAGAAATTATAGAAGAGTTACTAAAGCCTGTGGACGAGTCGCAAGATTTCATAAAGAGACAGCAGCTGAGGGAACTGGCATTGCTAAACTCGAACAACCTGAGGGAAGAGAGTCCGGGGCCAAGCGGAGGTGGAAGCGTTTCGCCTTTCAATTCAAGTGGTAAACGCCCGAAAACAGGATGCTAAGTAGCGTTTTGTACGTCTCGCCCAAAACGCTCCTTCAAGCCTTATAATGGTTACTTCAACCAAAAGTACATGTCTGCATGCATTACACAGACGCACATGTGTATATCTGGTTTCTCCAGTAGTGGCTGCAATGGTGGTGGTCTGGTCAAGGCCTGCCCTGGTCTCTCTCGGGTGAGCGACCCTGTGGCTTTCGTTTTTCTTCTTCTTTATTTTAAACTTTTGTTTTTCTTTTTCCTCATCAAAAATTCATTACAGATTATTTAAAAAAGATTCATGCAAAAAAAAAAAAAAAGAGTATGAGATATATAATATATATAGGGAGAAAAAGATGTGGTGGCTTGGGAGGGCGTGGACTGAAAATTCTTATTGTATAAACATAAACAAAAAACACATTTATTGGATTGATTCTTATCGTTTGATTTGGTTTATTTGTTTCTTT - >AT2G38610.2
AACTTTTAATCAAAGAAACAAAAAAAAAAAGAGATTTTTCAGACAGAAGAAAAAAAGAAAAAAAAAGTCTGGCGTCTTCTGCAGAATTCACATTTGGTGTCTGCTGCTGGCGTTGAGAAGAAGAAGAAGAAGAAAGGCACACAAAATAACCCATGTCTGGTTTATACAATAACTCATCTTACTTCTCTCCTGCTCGAGCTGCTTCTCCTCAGATTAGAAGCACTCCTGAGATCGACAGCTCTCAGTACTTGACGGAGCTTCTCGCTGAACATCAAAAGCTTACTCCTTTTATGCAGGTCCTACCCATATGTAGCCGTCTATTGAATCAAGAGATGTTCAGGGTCTCTGGAATGATGTCTAACCAAGGATTTGGTGATTTTGATAGACTTCGACACAGAAGTCCCAGCCCTATGGCTTCTTCTAATCTTATGTCTAATGTCTCTAATACCGGGTTAGGAGGCTGGAACGGCCTCTCTCAGGAGAGACTTAGTGGAACACCTGGAATGACAATGGATTGGCAAGGTGCACCTGGAAGCCCCAGTTCATACACCGTCAAAAGGATATTGCGTCTGGAGATTCCTGTAGATAACTATCCTAATTTCAATTTTGTTGGACGACTTCTCGGCCCTAGAGGCAACTCGTTAAAACGCGTTGAAGCTACCACCGGTTGCCGAGTATTCATCAGAGGGAAAGGGTCAATCAAGGATCCCGAAAAGGAAGATAAATTAAGGGGAAGACCTGGCTATGAACACTTGAATGAGCAGCTTCACATCTTAATAGAGGCAGATCTTCCAGCTAGTATTGTGGAGATACGTCTGCGACAAGCTCAAGAAATTATAGAAGAGTTACTAAAGCCTGTGGACGAGTCGCAAGATTTCATAAAGAGACAGCAGCTGAGGGAACTGGCATTGCTAAACTCGAACAACCTGAGGGAAGAGAGTCCGGGGCCAAGCGGAGGTGGAAGCGTTTCGCCTTTCAATTCAAGTGGTAAACGCCCGAAAACAGGATGCTAAGTAGCGTTTTGTACGTCTCGCCCAAAACGCTCCTTCAAGCCTTATAATGGTTACTTCAACCAAAAGTACATGTCTGCATGCATTACACAGACGCACATGTGTATATCTGGTTTCTCCAGTAGTGGCTGCAATGGTGGTGGTCTGGTCAAGGCCTGCCCTGGTCTCTCTCGGGTGAGCGACCCTGTGGCTTTCGTTTTTCTTCTTCTTTATTTTAAACTTTTGTTTTTCTTTTTCCTCATCAAAAATTCATTACAGATTATTTAAAAAAGATTCATGCAAAAAAAAAAAAAAAGAGTATGAGATATATAATATATATAGGGAGAAAAAGATGTGGTGGCTTGGGAGGGCGTGGACTGAAAATTCTTATTGTATAAACATAAACAAAAAACACATTTATTGGATTGATTCTTATCGTTTGATTTGGTTTATTTGTTTCTTT
CDS Sequence
- >AT2G38610.1
ATGTCTGGTTTATACAATAACTCATCTTACTTCTCTCCTGCTCGAGCTGCTTCTCCTCAGATTAGAAGCACTCCTGAGATCGACAGCTCTCAGTACTTGACGGAGCTTCTCGCTGAACATCAAAAGCTTACTCCTTTTATGCAGGTCCTACCCATATGTAGCCGTCTATTGAATCAAGAGATGTTCAGGGTCTCTGGAATGATGTCTAACCAAGGATTTGGTGATTTTGATAGACTTCGACACAGAAGTCCCAGCCCTATGGCTTCTTCTAATCTTATGTCTAATGTCTCTAATACCGGGTTAGGAGGCTGGAACGGCCTCTCTCAGGAGAGACTTAGTGGAACACCTGGAATGACAATGGATTGGCAAGGTGCACCTGGAAGCCCCAGTTCATACACCGTCAAAAGGATATTGCGTCTGGAGATTCCTGTAGATAACTATCCTAATTTCAATTTTGTTGGACGACTTCTCGGCCCTAGAGGCAACTCGTTAAAACGCGTTGAAGCTACCACCGGTTGCCGAGTATTCATCAGAGGGAAAGGGTCAATCAAGGATCCCGAAAAGGAAGATAAATTAAGGGGAAGACCTGGCTATGAACACTTGAATGAGCAGCTTCACATCTTAATAGAGGCAGATCTTCCAGCTAGTATTGTGGAGATACGTCTGCGACAAGCTCAAGAAATTATAGAAGAGTTACTAAAGCCTGTGGACGAGTCGCAAGATTTCATAAAGAGACAGCAGCTGAGGGAACTGGCATTGCTAAACTCGAACAACCTGAGGGAAGAGAGTCCGGGGCCAAGCGGAGGTGGAAGCGTTTCGCCTTTCAATTCAAGTGGTAAACGCCCGAAAACAGGATGCTAA - >AT2G38610.2
ATGTCTGGTTTATACAATAACTCATCTTACTTCTCTCCTGCTCGAGCTGCTTCTCCTCAGATTAGAAGCACTCCTGAGATCGACAGCTCTCAGTACTTGACGGAGCTTCTCGCTGAACATCAAAAGCTTACTCCTTTTATGCAGGTCCTACCCATATGTAGCCGTCTATTGAATCAAGAGATGTTCAGGGTCTCTGGAATGATGTCTAACCAAGGATTTGGTGATTTTGATAGACTTCGACACAGAAGTCCCAGCCCTATGGCTTCTTCTAATCTTATGTCTAATGTCTCTAATACCGGGTTAGGAGGCTGGAACGGCCTCTCTCAGGAGAGACTTAGTGGAACACCTGGAATGACAATGGATTGGCAAGGTGCACCTGGAAGCCCCAGTTCATACACCGTCAAAAGGATATTGCGTCTGGAGATTCCTGTAGATAACTATCCTAATTTCAATTTTGTTGGACGACTTCTCGGCCCTAGAGGCAACTCGTTAAAACGCGTTGAAGCTACCACCGGTTGCCGAGTATTCATCAGAGGGAAAGGGTCAATCAAGGATCCCGAAAAGGAAGATAAATTAAGGGGAAGACCTGGCTATGAACACTTGAATGAGCAGCTTCACATCTTAATAGAGGCAGATCTTCCAGCTAGTATTGTGGAGATACGTCTGCGACAAGCTCAAGAAATTATAGAAGAGTTACTAAAGCCTGTGGACGAGTCGCAAGATTTCATAAAGAGACAGCAGCTGAGGGAACTGGCATTGCTAAACTCGAACAACCTGAGGGAAGAGAGTCCGGGGCCAAGCGGAGGTGGAAGCGTTTCGCCTTTCAATTCAAGTGGTAAACGCCCGAAAACAGGATGCTAA
Protein Sequence
- >AT2G38610.1
MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQEMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGTPGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSGKRPKTGC - >AT2G38610.2
MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQEMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGTPGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSGKRPKTGC