Information report for AT2G38340
Gene Details
|
|
Functional Descriptions
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- GO:0045893 — involved in — positive regulation of DNA-templated transcription
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0045893 — acts upstream of or within — positive regulation of DNA-templated transcription
- GO:0009414 — acts upstream of or within — response to water deprivation
- GO:0005634 — located in — nucleus
- GO:0034605 — acts upstream of or within — cellular response to heat
- GO:0005634 — is active in — nucleus
- GO:0006950 — involved in — response to stress
- GO:0009651 — acts upstream of or within — response to salt stress
- GO:0003700 — enables — DNA-binding transcription factor activity
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. DOI: 10.1104/pp.104.047019 ; PMID: 15375205
- Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance. DOI: 10.1111/j.1365-313X.2006.02672.x ; PMID: 16553893
- Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. DOI: 10.1104/pp.106.081240 ; PMID: 16648215
- Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling. DOI: 10.1111/j.1365-313X.2006.02756.x ; PMID: 16805732
- Transcriptional changes in powdery mildew infected wheat and Arabidopsis leaves undergoing syringolin-triggered hypersensitive cell death at infection sites. DOI: 10.1007/s11103-006-9045-7 ; PMID: 16941219
- Nonenzymatic lipid peroxidation reprograms gene expression and activates defense markers in Arabidopsis tocopherol-deficient mutants. DOI: 10.1105/tpc.106.044065 ; PMID: 17194769
- ATR and ATM play both distinct and additive roles in response to ionizing radiation. DOI: 10.1111/j.1365-313X.2006.02931.x ; PMID: 17227549
- Involvement of CBF transcription factors in winter hardiness in birch. DOI: 10.1104/pp.108.117812 ; PMID: 18467468
- The Arabidopsis sweetie mutant is affected in carbohydrate metabolism and defective in the control of growth, development and senescence. DOI: 10.1111/j.1365-313X.2008.03541.x ; PMID: 18452589
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptional profiling of pea ABR17 mediated changes in gene expression in Arabidopsis thaliana. DOI: 10.1186/1471-2229-8-91 ; PMID: 18783601
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Functional characterization of four APETALA2-family genes (RAP2.6, RAP2.6L, DREB19 and DREB26) in Arabidopsis. DOI: 10.1007/s11103-010-9711-7 ; PMID: 21069430
- MYB transcription factors in Arabidopsis. DOI: 10.1016/j.tplants.2010.06.005 ; PMID: 20674465
- Enhanced Y1H assays for Arabidopsis. DOI: 10.1038/nmeth.1750 ; PMID: 22037706
- Oxidative stress provokes distinct transcriptional responses in the stress-tolerant atr7 and stress-sensitive loh2 Arabidopsis thaliana mutants as revealed by multi-parallel quantitative real-time PCR analysis of ROS marker and antioxidant genes. DOI: 10.1016/j.plaphy.2012.05.024 ; PMID: 22710144
- Promoter-based integration in plant defense regulation. DOI: 10.1104/pp.114.248716 ; PMID: 25352272
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. DOI: 10.1186/s12870-018-1255-z ; PMID: 29490615
- CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6: A Key Regulator of Na(+) Homeostasis during Germination. DOI: 10.1104/pp.19.00119 ; PMID: 30894419
- Transcriptional regulation of nitrogen-associated metabolism and growth. DOI: 10.1038/s41586-018-0656-3 ; PMID: 30356219
- A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. DOI: 10.1105/tpc.19.00562 ; PMID: 31806676
- A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. DOI: 10.1007/s00018-019-03202-5 ; PMID: 31250033
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family. DOI: 10.1007/s11103-005-1511-0 ; PMID: 16307362
- Genome-wide analysis of the ERF gene family in Arabidopsis and rice. DOI: 10.1104/pp.105.073783 ; PMID: 16407444
Gene Resources
- UniProt: A0A5S9X539
- EMBL: CACRSJ010000105, CACSHJ010000088, LR881467
- AlphaFoldDB: A0A5S9X539
- EnsemblPlants: AT2G38340.1
- Gramene: AT2G38340.1
- KEGG: ath:AT2G38340
- Orthologous matrix: ELGHDKT
- ExpressionAtlas: AT2G38340
- InterPro: IPR001471, IPR016177, IPR036955
- PANTHER: PTHR31241, PTHR31241:SF37
- SUPFAM: SSF54171
- PROSITE: PS51032
- Gene3D: 3.30.730.10
- OrthoDB: A0A5S9X539
- Conserved Domain Database: cd00018
Homologs
- Brassica napus GSBRNA2T00033990001, GSBRNA2T00014120001, GSBRNA2T00022359001
- Brassica oleracea XP_013634722.1
- Brassica rapa XP_009143395.1
- Raphanus raphanistrum RrC1125_p1
Sequences
cDNA Sequence
- >AT2G38340.1
CTGGCTTGCACCGTAAGCCAAAAAAACACTGAAAAAGTAAAATTTCAATTTAAGGTGGATTGGTGCCCAAGACTTACAATATCTATTTCTTCACGATATTTACGATAATTTTCAAAGTCTTAGCCGCAAAGAAATCTATAATGACCAAAACATATTGAAAAACAAATCCTAGCATACCAGAATCTGCCTAAACTGGGAAGTCACCACGTGTCTTGTAGCCGTACATTTAATTGTCATGCAGACAAAAATTTATAGTTTATTGTTTGGTTTTATGTTCGAAATTTAATAGTGATTGTACTGCGCTCCGTAATATTTTCTACAGTTTGTACGTGTTGTGTTTTTCCAATGGAAAAGGAAGATAACGGATCGAAACAGAGCTCCTCTGCTTCTGTTGTATCCTCGAGAAGACGAAGAAGAGTGGTTGAGCCAGTGGAAGCGACGTTACAGAGATGGGAGGAAGAAGGATTGGCGAGAGCTCGTAGGGTTCAAGCCAAAGGTTCGAAGAAAGGTTGTATGAGAGGAAAAGGTGGACCAGAGAATCCTGTTTGTCGGTTTAGAGGTGTTCGACAAAGGGTTTGGGGGAAATGGGTTGCTGAGATACGTGAACCAGTGAGTCACCGTGGTGCAAACTCTAGTCGTAGTAAACGGCTTTGGCTTGGCACGTTTGCTACTGCAGCTGAAGCTGCTTTGGCTTACGACAGAGCTGCTAGTGTCATGTACGGACCCTATGCCAGGTTAAATTTCCCGGAAGATTTGGGTGGGGGAAGGAAGAAGGACGAGGAGGCGGAAAGTTCGGGAGGCTATTGGTTGGAAACTAACAAAGCCGGTAATGGCGTGATTGAAACGGAAGGTGGAAAAGACTATGTAGTCTACAATGAAGACGCTATTGAGCTTGGCCATGACAAGACTCAGAATCCTATGACTGATAATGAAATAGTGAACCCAGCAGTGAAATCAGAGGAAGGTTACAGCTATGATCGATTCAAATTGGATAACGGATTGTTGTATAATGAACCTCAAAGCTCCAGTTATCACCAGGGAGGTGGATTCGATTCATATTTTGAGTATTTCAGATTCTAGCTTAGGATTTATGCTGCATCAATATACTATGACTATGAGACTATGTTTTTT
CDS Sequence
- >AT2G38340.1
ATGGAAAAGGAAGATAACGGATCGAAACAGAGCTCCTCTGCTTCTGTTGTATCCTCGAGAAGACGAAGAAGAGTGGTTGAGCCAGTGGAAGCGACGTTACAGAGATGGGAGGAAGAAGGATTGGCGAGAGCTCGTAGGGTTCAAGCCAAAGGTTCGAAGAAAGGTTGTATGAGAGGAAAAGGTGGACCAGAGAATCCTGTTTGTCGGTTTAGAGGTGTTCGACAAAGGGTTTGGGGGAAATGGGTTGCTGAGATACGTGAACCAGTGAGTCACCGTGGTGCAAACTCTAGTCGTAGTAAACGGCTTTGGCTTGGCACGTTTGCTACTGCAGCTGAAGCTGCTTTGGCTTACGACAGAGCTGCTAGTGTCATGTACGGACCCTATGCCAGGTTAAATTTCCCGGAAGATTTGGGTGGGGGAAGGAAGAAGGACGAGGAGGCGGAAAGTTCGGGAGGCTATTGGTTGGAAACTAACAAAGCCGGTAATGGCGTGATTGAAACGGAAGGTGGAAAAGACTATGTAGTCTACAATGAAGACGCTATTGAGCTTGGCCATGACAAGACTCAGAATCCTATGACTGATAATGAAATAGTGAACCCAGCAGTGAAATCAGAGGAAGGTTACAGCTATGATCGATTCAAATTGGATAACGGATTGTTGTATAATGAACCTCAAAGCTCCAGTTATCACCAGGGAGGTGGATTCGATTCATATTTTGAGTATTTCAGATTCTAG
Protein Sequence
- >AT2G38340.1
MEKEDNGSKQSSSASVVSSRRRRRVVEPVEATLQRWEEEGLARARRVQAKGSKKGCMRGKGGPENPVCRFRGVRQRVWGKWVAEIREPVSHRGANSSRSKRLWLGTFATAAEAALAYDRAASVMYGPYARLNFPEDLGGGRKKDEEAESSGGYWLETNKAGNGVIETEGGKDYVVYNEDAIELGHDKTQNPMTDNEIVNPAVKSEEGYSYDRFKLDNGLLYNEPQSSSYHQGGGFDSYFEYFRF