Information report for AT2G32940
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- GO:0004521 — enables — RNA endonuclease activity
- GO:0035197 — enables — siRNA binding
- GO:0035194 — involved in — regulatory ncRNA-mediated post-transcriptional gene silencing
- GO:0005737 — is active in — cytoplasm
- GO:0006306 — acts upstream of or within — DNA methylation
- GO:0051607 — acts upstream of or within — defense response to virus
- GO:0005634 — located in — nucleus
- GO:0003723 — enables — RNA binding
- GO:0030422 — acts upstream of or within — siRNA processing
- GO:0005737 — located in — cytoplasm
- CS66095 — greater reduction in DNA methylation at endogenous targets such as AtSN1, MEA-ISR, AtREP2 and SIMPLEHAT2 and lower AtREP2 siRNA levels than in either of the single mutants.
- CS66096 — reduced DNA methylation at endogenous targets such as AtSN1, MEA-ISR, AtREP2 and SIMPLEHAT2; reduced levels of AtREP2 siRNAs.
- CS66097 — release of TGS of transgenic RD29A-LUC and the endogenous RD29A gene; reduced DNA methylation at endogenous targets such as AtSN1, MEA-ISR, AtREP2 and SIMPLEHAT2; ; reduced levels of AtREP2 siRNAs
- CS69754 — Reactivation of GFP fluorescence and reduced DNA methylation of the enhancer region of the GFP target construct (T).
- CS69755 — Reactivation of GFP fluorescence and reduced DNA methylation of the enhancer region of the GFP target construct (T).
- CS69756 — Reactivation of GFP fluorescence and reduced DNA methylation of the enhancer region of the GFP target construct (T).
- CS72560 — defects in small RNA accumulation
- CS72563 — partial complementation of small RNA accumulation
- ago6-1 — Almost two-fold reduction in CpNpG and four-fold reduction in asymmetric methylation at the AtSN1 locus but not the 5S rDNA repeat. Reduced accumulation of endogenous heterochromatin-related siRNAs.
- ago6-1 ago4-1 — Substantial decreases in DNA methylation at CpNpG and asymmetric sites but not at CpG sites with respect to the single mutants alone.
Literature and News
- Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance. DOI: 10.1105/tpc.010358 ; PMID: 11910010
- Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. DOI: 10.1104/pp.104.057935 ; PMID: 15908605
- Arabidopsis endogenous small RNAs: highways and byways. DOI: 10.1016/j.tplants.2006.07.006 ; PMID: 16893673
- Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. DOI: 10.1038/sj.emboj.7601603 ; PMID: 17332757
- Common functions for diverse small RNAs of land plants. DOI: 10.1105/tpc.107.051706 ; PMID: 17601824
- The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. DOI: 10.1105/tpc.109.072199 ; PMID: 20173091
- Identification of genes required for de novo DNA methylation in Arabidopsis. DOI: 10.4161/epi.6.3.14242 ; PMID: 21150311
- AGO6 functions in RNA-mediated transcriptional gene silencing in shoot and root meristems in Arabidopsis thaliana. DOI: 10.1371/journal.pone.0025730 ; PMID: 21998686
- Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. DOI: 10.1016/j.cell.2012.10.054 ; PMID: 23313553
- Specific argonautes selectively bind small RNAs derived from potato spindle tuber viroid and attenuate viroid accumulation in vivo. DOI: 10.1128/JVI.01404-14 ; PMID: 25100851
- Specific but interdependent functions for Arabidopsis AGO4 and AGO6 in RNA-directed DNA methylation. DOI: 10.15252/embj.201489453 ; PMID: 25527293
- Functional and Genetic Analysis Identify a Role for Arabidopsis ARGONAUTE5 in Antiviral RNA Silencing. DOI: 10.1105/tpc.15.00264 ; PMID: 26023161
- A Multigenic Network of ARGONAUTE4 Clade Members Controls Early Megaspore Formation in Arabidopsis. DOI: 10.1534/genetics.116.188151 ; PMID: 27591749
- ARGONAUTE 6 bridges transposable element mRNA-derived siRNAs to the establishment of DNA methylation. DOI: 10.15252/embj.201489499 ; PMID: 25388951
- The RNA Export Factor ALY1 Enables Genome-Wide RNA-Directed DNA Methylation. DOI: 10.1105/tpc.18.00624 ; PMID: 30814259
- Crosstalk between epigenetic silencing and infection by tobacco rattle virus in Arabidopsis. DOI: 10.1111/mpp.12850 ; PMID: 31274236
- Origin, evolution and diversification of plant ARGONAUTE proteins. DOI: 10.1111/tpj.15615 ; PMID: 34845788
- The RNA-binding protein RBP45D of Arabidopsis promotes transgene silencing and flowering time. DOI: 10.1111/tpj.15637 ; PMID: 34919766
- The mechanisms of siRNA selection by plant Argonaute proteins triggering DNA methylation. DOI: 10.1093/nar/gkac1135 ; PMID: 36477368
Gene Resources
- UniProt: A0A654EZS0
- EMBL: CACRSJ010000105, LR881467
- AlphaFoldDB: A0A654EZS0
- EnsemblPlants: AT2G32940.1
- Gramene: AT2G32940.1
- KEGG: ath:AT2G32940
- Orthologous matrix: MNDQYYT
- ExpressionAtlas: AT2G32940
- InterPro: IPR003100, IPR003165, IPR012337
- PANTHER: PTHR22891
- SUPFAM: SSF101690, SSF53098
- PROSITE: PS50821, PS50822
- Gene3D: 2.170.260.10, 3.30.420.10, 3.40.50.2300
- SWISS-MODEL: A0A654EZS0
- Conserved Domain Database: cd02846, cd04657
Homologs
- Glycine max Glyma.14G127400.1.p, Glyma.07G099100.1.p
- Malus domestica MDP0000285251
- Musa acuminata GSMUA_Achr6P04510_001
- Oryza sativa OsAGO1a, OsAGO1b, OsAGO1d, OsPNH1, MEL1, OsAGO1c, AGO18;OsAGO18, OsAGO17, OsAGO7;shl4, OsAGO2
- Triticum aestivum TaAGO4, TaAGO1b, Traes_5AL_481F73E59
Sequences
cDNA Sequence
- >AT2G32940.1
AAGTGAAATATATTTTAATTTTCCCATCACTGGAAACGTTCCCTCCATTCTTTTGCTTGTCTGGGAAACCCAAAGAGACTGTGACGGAGAAGAGAAATGAGCTAAATAAATTCCTCTCTTTGATTCACCGGAACCCTAGAAATCCTCTTCTTAATTCTTTCAAAGATTATTTTCCCCTGGAAGGATGGAGACATCTTCATCTCTGCCACTGTCACCCATAAGTATAGAACCAGAACAGCCCAGCCATCGAGATTATGACATCACAACTAGACGTGGGGTTGGAACCACAGGCAACCCAATAGAATTGTGCACCAATCACTTTAATGTTTCTGTGAGACAGCCGGATGTAGTATTTTACCAGTACACTGTTAGTATCACCACAGAAAACGGTGATGCTGTTGATGGGACAGGAATAAGCAGAAAGCTTATGGACCAACTATTCAAGACTTACTCTTCTGATCTTGATGGTAAAAGGTTGGCATATGATGGAGAGAAGACTTTATATACTGTTGGTCCTCTACCACAGAACGAATTTGACTTTCTAGTCATCGTGGAAGGGTCATTTTCAAAACGTGATTGTGGTGTCTCTGATGGTGGTAGTTCTTCCGGTACTTGCAAGCGATCAAAACGTTCTTTCTTGCCAAGAAGTTACAAGGTTCAGATACATTATGCTGCAGAAATACCGTTGAAGACTGTTCTTGGCACTCAGAGAGGAGCTTATACACCAGATAAGAGTGCTCAGGATGCACTTAGAGTGCTTGACATTGTACTGAGGCAGCAAGCAGCTGAAAGGGGATGCCTTTTGGTCAGACAGGCATTTTTCCATAGCGATGGGCACCCCATGAAAGTTGGAGGAGGTGTTATAGGTATTCGAGGTTTACATTCGAGCTTTCGTCCAACTCATGGAGGACTCTCGCTTAACATTGATGTGTCAACAACAATGATCTTAGAACCTGGTCCAGTTATTGAATTCCTGAAAGCCAATCAGAGTGTTGAGACACCACGGCAAATCGACTGGATTAAGGCTGCGAAAATGCTTAAACATATGAGGGTTAAGGCAACACACCGTAACATGGAATTTAAAATTATAGGTCTAAGTTCGAAACCGTGCAATCAGCAACTGTTTTCAATGAAGATTAAAGATGGTGAACGTGAGGTACCTATTAGAGAGATTACTGTGTATGACTATTTCAAGCAAACCTACACAGAGCCTATTTCTTCTGCGTACTTTCCATGCCTTGATGTTGGCAAGCCAGATCGGCCCAACTATCTTCCACTGGAGTTTTGTAATCTTGTATCTCTGCAACGTTATACAAAACCATTGTCAGGGAGGCAAAGAGTTTTACTTGTTGAAAGTTCAAGACAAAAACCTCTAGAGAGAATTAAAACACTCAATGATGCAATGCATACCTACTGCTATGACAAGGACCCATTTTTGGCTGGATGTGGCATCTCCATTGAAAAAGAAATGACTCAAGTTGAAGGCCGTGTTCTCAAGCCCCCAATGCTGAAGTTTGGCAAGAATGAAGATTTTCAACCTTGCAACGGACGGTGGAACTTTAACAACAAGATGCTTCTAGAACCAAGAGCTATTAAAAGCTGGGCTATCGTCAACTTTTCTTTTCCATGCGACAGTAGTCACATTTCCCGTGAGCTTATAAGCTGTGGCATGAGGAAAGGCATTGAAATTGATCGACCTTTTGCACTAGTTGAAGAGGATCCACAGTACAAAAAAGCAGGTCCTGTTGAAAGGGTAGAAAAAATGATTGCAACGATGAAGTTAAAATTTCCAGATCCTCCTCATTTTATCCTCTGTATTCTGCCAGAACGGAAAACTTCTGATATCTATGGTCCCTGGAAGAAGATATGCCTCACTGAAGAAGGGATCCACACACAATGCATCTGCCCAATCAAGATCAGTGACCAATATCTCACCAATGTACTTCTGAAGATAAATTCGAAGCTTGGAGGCATCAATTCTCTGTTGGGAATAGAGTACTCTTACAACATTCCATTGATAAACAAAATTCCCACCTTGATTTTGGGTATGGATGTATCTCATGGGCCTCCAGGTCGGGCAGATGTTCCTTCAGTAGCAGCGGTTGTTGGTTCAAAATGCTGGCCCTTAATCTCAAGGTATAGGGCAGCTGTAAGAACTCAGTCACCACGTCTGGAGATGATTGATTCGCTCTTCCAACCTATCGAGAACACTGAGAAAGGAGATAACGGTATCATGAACGAATTATTTGTAGAGTTCTATCGGACAAGCAGGGCACGGAAACCTAAGCAGATTATCATTTTCAGGGATGGTGTGAGTGAATCACAGTTCGAGCAAGTCTTGAAGATCGAAGTGGACCAAATTATAAAGGCGTATCAACGTCTTGGTGAATCTGATGTGCCAAAATTCACTGTCATTGTGGCTCAGAAGAACCACCACACCAAGTTGTTTCAAGCTAAGGGTCCTGAAAATGTTCCTGCAGGAACTGTCGTGGACACCAAGATCGTACACCCGACAAACTACGATTTTTACATGTGTGCTCATGCAGGAAAAATAGGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGTCAACCAACGTAGCACAACTGCAACTTCGATCGTGGCTCCAGTACGATACGCTCATCTTGCAGCAGCTCAAGTTGCGCAATTCACAAAGTTTGAAGGTATATCGGAGGACGGGAAAGTTCCAGAGCTTCCACGTCTGCACGAGAATGTCGAAGGCAACATGTTCTTCTGCTGAGTACATATAAGTAGTTCTGCTTCCTCCCTAGTCTAAACCCAAACCCTCCTCTTTAGAGGAAGTTTATCATTTTGCATATATGCAATCATCACCGTACAGTTTCATTAGAAGTAAGAAGAAAGATCCTCGCGTAGATTAAGAGGCTCATTGGCTTATTGATAGCCCAAGTTTGCTTACTAAACGGCAGCGATTTTTGCGTTTAGCTTTTGGATTTTTCAATACGTTATATTAAATTTTCTTTTTTGTTTTGTGACGGGACTCACAAAGGGAAATGAAAAGTGAGAAAAACTCTTGACGTAAAA
CDS Sequence
- >AT2G32940.1
ATGGAGACATCTTCATCTCTGCCACTGTCACCCATAAGTATAGAACCAGAACAGCCCAGCCATCGAGATTATGACATCACAACTAGACGTGGGGTTGGAACCACAGGCAACCCAATAGAATTGTGCACCAATCACTTTAATGTTTCTGTGAGACAGCCGGATGTAGTATTTTACCAGTACACTGTTAGTATCACCACAGAAAACGGTGATGCTGTTGATGGGACAGGAATAAGCAGAAAGCTTATGGACCAACTATTCAAGACTTACTCTTCTGATCTTGATGGTAAAAGGTTGGCATATGATGGAGAGAAGACTTTATATACTGTTGGTCCTCTACCACAGAACGAATTTGACTTTCTAGTCATCGTGGAAGGGTCATTTTCAAAACGTGATTGTGGTGTCTCTGATGGTGGTAGTTCTTCCGGTACTTGCAAGCGATCAAAACGTTCTTTCTTGCCAAGAAGTTACAAGGTTCAGATACATTATGCTGCAGAAATACCGTTGAAGACTGTTCTTGGCACTCAGAGAGGAGCTTATACACCAGATAAGAGTGCTCAGGATGCACTTAGAGTGCTTGACATTGTACTGAGGCAGCAAGCAGCTGAAAGGGGATGCCTTTTGGTCAGACAGGCATTTTTCCATAGCGATGGGCACCCCATGAAAGTTGGAGGAGGTGTTATAGGTATTCGAGGTTTACATTCGAGCTTTCGTCCAACTCATGGAGGACTCTCGCTTAACATTGATGTGTCAACAACAATGATCTTAGAACCTGGTCCAGTTATTGAATTCCTGAAAGCCAATCAGAGTGTTGAGACACCACGGCAAATCGACTGGATTAAGGCTGCGAAAATGCTTAAACATATGAGGGTTAAGGCAACACACCGTAACATGGAATTTAAAATTATAGGTCTAAGTTCGAAACCGTGCAATCAGCAACTGTTTTCAATGAAGATTAAAGATGGTGAACGTGAGGTACCTATTAGAGAGATTACTGTGTATGACTATTTCAAGCAAACCTACACAGAGCCTATTTCTTCTGCGTACTTTCCATGCCTTGATGTTGGCAAGCCAGATCGGCCCAACTATCTTCCACTGGAGTTTTGTAATCTTGTATCTCTGCAACGTTATACAAAACCATTGTCAGGGAGGCAAAGAGTTTTACTTGTTGAAAGTTCAAGACAAAAACCTCTAGAGAGAATTAAAACACTCAATGATGCAATGCATACCTACTGCTATGACAAGGACCCATTTTTGGCTGGATGTGGCATCTCCATTGAAAAAGAAATGACTCAAGTTGAAGGCCGTGTTCTCAAGCCCCCAATGCTGAAGTTTGGCAAGAATGAAGATTTTCAACCTTGCAACGGACGGTGGAACTTTAACAACAAGATGCTTCTAGAACCAAGAGCTATTAAAAGCTGGGCTATCGTCAACTTTTCTTTTCCATGCGACAGTAGTCACATTTCCCGTGAGCTTATAAGCTGTGGCATGAGGAAAGGCATTGAAATTGATCGACCTTTTGCACTAGTTGAAGAGGATCCACAGTACAAAAAAGCAGGTCCTGTTGAAAGGGTAGAAAAAATGATTGCAACGATGAAGTTAAAATTTCCAGATCCTCCTCATTTTATCCTCTGTATTCTGCCAGAACGGAAAACTTCTGATATCTATGGTCCCTGGAAGAAGATATGCCTCACTGAAGAAGGGATCCACACACAATGCATCTGCCCAATCAAGATCAGTGACCAATATCTCACCAATGTACTTCTGAAGATAAATTCGAAGCTTGGAGGCATCAATTCTCTGTTGGGAATAGAGTACTCTTACAACATTCCATTGATAAACAAAATTCCCACCTTGATTTTGGGTATGGATGTATCTCATGGGCCTCCAGGTCGGGCAGATGTTCCTTCAGTAGCAGCGGTTGTTGGTTCAAAATGCTGGCCCTTAATCTCAAGGTATAGGGCAGCTGTAAGAACTCAGTCACCACGTCTGGAGATGATTGATTCGCTCTTCCAACCTATCGAGAACACTGAGAAAGGAGATAACGGTATCATGAACGAATTATTTGTAGAGTTCTATCGGACAAGCAGGGCACGGAAACCTAAGCAGATTATCATTTTCAGGGATGGTGTGAGTGAATCACAGTTCGAGCAAGTCTTGAAGATCGAAGTGGACCAAATTATAAAGGCGTATCAACGTCTTGGTGAATCTGATGTGCCAAAATTCACTGTCATTGTGGCTCAGAAGAACCACCACACCAAGTTGTTTCAAGCTAAGGGTCCTGAAAATGTTCCTGCAGGAACTGTCGTGGACACCAAGATCGTACACCCGACAAACTACGATTTTTACATGTGTGCTCATGCAGGAAAAATAGGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGTCAACCAACGTAGCACAACTGCAACTTCGATCGTGGCTCCAGTACGATACGCTCATCTTGCAGCAGCTCAAGTTGCGCAATTCACAAAGTTTGAAGGTATATCGGAGGACGGGAAAGTTCCAGAGCTTCCACGTCTGCACGAGAATGTCGAAGGCAACATGTTCTTCTGCTGA
Protein Sequence
- >AT2G32940.1
METSSSLPLSPISIEPEQPSHRDYDITTRRGVGTTGNPIELCTNHFNVSVRQPDVVFYQYTVSITTENGDAVDGTGISRKLMDQLFKTYSSDLDGKRLAYDGEKTLYTVGPLPQNEFDFLVIVEGSFSKRDCGVSDGGSSSGTCKRSKRSFLPRSYKVQIHYAAEIPLKTVLGTQRGAYTPDKSAQDALRVLDIVLRQQAAERGCLLVRQAFFHSDGHPMKVGGGVIGIRGLHSSFRPTHGGLSLNIDVSTTMILEPGPVIEFLKANQSVETPRQIDWIKAAKMLKHMRVKATHRNMEFKIIGLSSKPCNQQLFSMKIKDGEREVPIREITVYDYFKQTYTEPISSAYFPCLDVGKPDRPNYLPLEFCNLVSLQRYTKPLSGRQRVLLVESSRQKPLERIKTLNDAMHTYCYDKDPFLAGCGISIEKEMTQVEGRVLKPPMLKFGKNEDFQPCNGRWNFNNKMLLEPRAIKSWAIVNFSFPCDSSHISRELISCGMRKGIEIDRPFALVEEDPQYKKAGPVERVEKMIATMKLKFPDPPHFILCILPERKTSDIYGPWKKICLTEEGIHTQCICPIKISDQYLTNVLLKINSKLGGINSLLGIEYSYNIPLINKIPTLILGMDVSHGPPGRADVPSVAAVVGSKCWPLISRYRAAVRTQSPRLEMIDSLFQPIENTEKGDNGIMNELFVEFYRTSRARKPKQIIIFRDGVSESQFEQVLKIEVDQIIKAYQRLGESDVPKFTVIVAQKNHHTKLFQAKGPENVPAGTVVDTKIVHPTNYDFYMCAHAGKIGTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQVAQFTKFEGISEDGKVPELPRLHENVEGNMFFC