Gene Details:
- Gene ID: AT2G32370
- Gene Symbol: HDG3
- Gene Name: homeodomain GLABROUS 3
- Description: homeodomain GLABROUS 3;(source:Araport11)
- TAIR Accession: locus:2062540
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009001 — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
Gene Ontology:
- GO:0048825 — acts upstream of or within — cotyledon development
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0005515 — enables — protein binding
- GO:0008289 — enables — lipid binding
- GO:0005634 — located in — nucleus
- GO:0030154 — acts upstream of positive effect — cell differentiation
- GO:0000981 — enables — DNA-binding transcription factor activity, RNA polymerase II-specific
Germplasm Phenotype:
- CS69198 — No visible phenotype.
- SALK_033462C — No visible phenotype.
- hdg3-1 atml1-1 — Defects in cotyledon development. Frequently exhibited hyponastic growth of cotyledons.
- hdg3-1 pdf2-1 — Defects in cotyledon development.
Function-related keywords:
Literature:
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors. DOI: 10.1186/gb-2004-5-6-r41 ; PMID: 15186492
- Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis. DOI: 10.1104/pp.106.077388 ; PMID: 16778018
- Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. DOI: 10.1104/pp.108.128108 ; PMID: 18923020
- A comparison of transcriptome and epigenetic status between closely related species in the genus Arabidopsis. DOI: 10.1016/j.gene.2012.07.003 ; PMID: 22796129
- Perturbation of parentally biased gene expression during interspecific hybridization. DOI: 10.1371/journal.pone.0117293 ; PMID: 25719202
- A variably imprinted epiallele impacts seed development. DOI: 10.1371/journal.pgen.1007469 ; PMID: 30395602
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Sequences:
cDNA Sequence
- >AT2G32370.1
ACTCGCACTCTCAGCACTTTCATTTACCTCTCAAAACTGCTTCATAAAACCTCGATACCATCTAAGAGTTACTCCCATATTTCATCGCCCATAAAAGAGTGAGCCAAAGATATACGGAGGGATAGATCAAGCTAGCAAAGGAACGAAAAACATAAAAAAGATTTGATTTTTCTGAGTTTATCACAGCCAAAACTTCAAAAGATCTTTAGAATCCCAAAGAAAAGAAAACAACAACAAAAATGTCTCAGTCAAACATGGTACCAGTGGCTAACAACGGAGACAACAACAACGACAACGAAAACAACAACAACAACAACAACAATGGTGGAACTGACAACACTAATGCTGGAAATGATTCTGGAGATCAAGATTTCGACAGTGGGAATACCTCAAGTGGCAATCATGGAGAAGGGTTGGGAAACAATCAAGCTCCTCGTCATAAGAAGAAAAAATACAATCGTCACACCCAACTTCAGATTTCGGAGATGGAAGCTTTCTTCAGAGAGTGTCCTCACCCAGATGACAAACAAAGGTACGACCTTAGCGCTCAATTGGGATTGGACCCTGTTCAGATCAAATTCTGGTTCCAGAACAAACGCACTCAAAACAAGAATCAACAAGAACGCTTTGAGAACTCAGAACTTCGGAATCTGAACAACCACCTTAGGTCTGAAAATCAGCGGTTACGAGAAGCTATTCATCAAGCCTTATGCCCTAAGTGTGGAGGCCAAACTGCAATTGGCGAAATGACCTTCGAAGAGCACCATCTTCGCATCCTCAACGCTCGTTTGACTGAAGAGATCAAGCAACTTTCCGTGACAGCGGAAAAGATATCAAGGCTTACGGGGATACCAGTAAGGAGCCATCCCCGTGTGTCTCCTCCTAATCCTCCTCCAAATTTCGAGTTCGGGATGGGATCTAAGGGAAATGTCGGAAACCACTCGAGGGAAACCACTGGACCTGCAGATGCTAATACCAAGCCGATCATCATGGAGTTGGCATTTGGAGCCATGGAGGAGCTCTTGGTGATGGCTCAAGTGGCTGAACCACTGTGGATGGGAGGATTTAATGGCACTAGCTTAGCTTTGAACTTGGATGAATACGAAAAGACGTTTCGCACGGGTCTCGGTCCTAGACTTGGCGGGTTTCGAACCGAGGCATCCAGGGAAACTGCACTCGTGGCAATGTGTCCTACTGGCATTGTTGAAATGCTCATGCAAGAGAATCTGTGGTCAACAATGTTTGCCGGAATTGTTGGTAGAGCCAGGACTCATGAACAGATAATGGCTGATGCTGCTGGAAACTTCAATGGAAATCTCCAAATAATGAGTGCTGAGTACCAAGTGCTTTCCCCGCTAGTCACAACCCGCGAAAGCTACTTCGTCCGCTACTGTAAGCAACAAGGAGAGGGTTTGTGGGCGGTGGTCGATATTTCCATCGACCATCTCCTCCCAAACATCAACCTAAAATGTCGCCGCCGACCCTCTGGATGTCTGATTCAAGAAATGCATAGTGGTTACTCCAAGGTTACATGGGTGGAACATGTGGAAGTAGATGATGCAGGAAGTTACAGCATCTTTGAGAAATTAATCTGTACTGGTCAAGCTTTTGCTGCTAACCGCTGGGTTGGTACATTGGTACGCCAGTGTGAGCGGATATCTAGCATCTTGTCGACAGATTTTCAATCTGTCGATTCCGGTGATCACATAACGCTAACTAACCATGGAAAGATGAGCATGCTGAAGATAGCTGAGCGGATTGCGAGAACCTTCTTTGCTGGAATGACCAATGCGACGGGGTCTACAATATTTTCTGGTGTTGAAGGAGAAGATATCAGAGTGATGACAATGAAGAGCGTGAATGATCCAGGAAAGCCTCCCGGTGTCATTATTTGTGCAGCCACTTCCTTTTGGCTTCCTGCTCCTCCTAACACTGTCTTTGACTTCCTCAGAGAGGCTACTCACCGACACAATTGGGATGTTCTCTGCAACGGAGAGATGATGCACAAGATAGCAGAGATTACGAATGGGATAGACAAAAGGAACTGTGCAAGTTTACTCCGGCATGGACACACTAGCAAGAGCAAGATGATGATAGTTCAAGAGACTTCTACTGACCCAACAGCTTCATTTGTGCTTTATGCGCCTGTTGATATGACATCAATGGATATTACTCTCCATGGAGGTGGTGATCCTGACTTTGTGGTGATCCTGCCTTCTGGTTTTGCTATTTTTCCAGATGGTACGGGTAAGCCTGGAGGAAAAGAAGGAGGATCACTTTTGACCATTTCCTTCCAAATGCTGGTTGAGTCAGGTCCTGAGGCTAGGCTGAGTGTTAGCTCTGTTGCAACTACTGAGAATCTGATTCGTACAACCGTGCGGAGGATCAAAGATTTGTTTCCTTGTCAGACTGCTTGAACCACCCCCATTTCGGTAATCTATTGGAGAGCTTCAAAAGGGGAGGAGTCAAGAACGAACCTCAAGGAGATTGGTTTTTTACGAGGTTCGGGATTTGACTAGCCCTGGAATAAACCCATTCAAGATGGAAAAAACAACTATCTTTTCCTTTCATTTGAGTCTTTTGTTTCCTTGTCATTGTTTGGACTTGGAACCTTTTGCTATTTCAGTTGAGTCTTTGGTTTCCTTGTCATTGTTGGACTTGGAACCTTTTGTTATTTCATTCGAGTCTTTGGTTTCCTTGTCATTGTTGGACTTGGAAACCTTTTGTTATTTCAGTTGAGTCTGTTTGTTTCCTTGTCATTGTTGGACATGGAACCTTTCGTTGTTTCAGTTGAGTCTGTTTGTTTCCTTGTCATTGTTGGACTTGGAAACCTTTATGAAGTTATTGAGTACTCTTTTTCTCT
CDS Sequence
- >AT2G32370.1
ATGTCTCAGTCAAACATGGTACCAGTGGCTAACAACGGAGACAACAACAACGACAACGAAAACAACAACAACAACAACAACAATGGTGGAACTGACAACACTAATGCTGGAAATGATTCTGGAGATCAAGATTTCGACAGTGGGAATACCTCAAGTGGCAATCATGGAGAAGGGTTGGGAAACAATCAAGCTCCTCGTCATAAGAAGAAAAAATACAATCGTCACACCCAACTTCAGATTTCGGAGATGGAAGCTTTCTTCAGAGAGTGTCCTCACCCAGATGACAAACAAAGGTACGACCTTAGCGCTCAATTGGGATTGGACCCTGTTCAGATCAAATTCTGGTTCCAGAACAAACGCACTCAAAACAAGAATCAACAAGAACGCTTTGAGAACTCAGAACTTCGGAATCTGAACAACCACCTTAGGTCTGAAAATCAGCGGTTACGAGAAGCTATTCATCAAGCCTTATGCCCTAAGTGTGGAGGCCAAACTGCAATTGGCGAAATGACCTTCGAAGAGCACCATCTTCGCATCCTCAACGCTCGTTTGACTGAAGAGATCAAGCAACTTTCCGTGACAGCGGAAAAGATATCAAGGCTTACGGGGATACCAGTAAGGAGCCATCCCCGTGTGTCTCCTCCTAATCCTCCTCCAAATTTCGAGTTCGGGATGGGATCTAAGGGAAATGTCGGAAACCACTCGAGGGAAACCACTGGACCTGCAGATGCTAATACCAAGCCGATCATCATGGAGTTGGCATTTGGAGCCATGGAGGAGCTCTTGGTGATGGCTCAAGTGGCTGAACCACTGTGGATGGGAGGATTTAATGGCACTAGCTTAGCTTTGAACTTGGATGAATACGAAAAGACGTTTCGCACGGGTCTCGGTCCTAGACTTGGCGGGTTTCGAACCGAGGCATCCAGGGAAACTGCACTCGTGGCAATGTGTCCTACTGGCATTGTTGAAATGCTCATGCAAGAGAATCTGTGGTCAACAATGTTTGCCGGAATTGTTGGTAGAGCCAGGACTCATGAACAGATAATGGCTGATGCTGCTGGAAACTTCAATGGAAATCTCCAAATAATGAGTGCTGAGTACCAAGTGCTTTCCCCGCTAGTCACAACCCGCGAAAGCTACTTCGTCCGCTACTGTAAGCAACAAGGAGAGGGTTTGTGGGCGGTGGTCGATATTTCCATCGACCATCTCCTCCCAAACATCAACCTAAAATGTCGCCGCCGACCCTCTGGATGTCTGATTCAAGAAATGCATAGTGGTTACTCCAAGGTTACATGGGTGGAACATGTGGAAGTAGATGATGCAGGAAGTTACAGCATCTTTGAGAAATTAATCTGTACTGGTCAAGCTTTTGCTGCTAACCGCTGGGTTGGTACATTGGTACGCCAGTGTGAGCGGATATCTAGCATCTTGTCGACAGATTTTCAATCTGTCGATTCCGGTGATCACATAACGCTAACTAACCATGGAAAGATGAGCATGCTGAAGATAGCTGAGCGGATTGCGAGAACCTTCTTTGCTGGAATGACCAATGCGACGGGGTCTACAATATTTTCTGGTGTTGAAGGAGAAGATATCAGAGTGATGACAATGAAGAGCGTGAATGATCCAGGAAAGCCTCCCGGTGTCATTATTTGTGCAGCCACTTCCTTTTGGCTTCCTGCTCCTCCTAACACTGTCTTTGACTTCCTCAGAGAGGCTACTCACCGACACAATTGGGATGTTCTCTGCAACGGAGAGATGATGCACAAGATAGCAGAGATTACGAATGGGATAGACAAAAGGAACTGTGCAAGTTTACTCCGGCATGGACACACTAGCAAGAGCAAGATGATGATAGTTCAAGAGACTTCTACTGACCCAACAGCTTCATTTGTGCTTTATGCGCCTGTTGATATGACATCAATGGATATTACTCTCCATGGAGGTGGTGATCCTGACTTTGTGGTGATCCTGCCTTCTGGTTTTGCTATTTTTCCAGATGGTACGGGTAAGCCTGGAGGAAAAGAAGGAGGATCACTTTTGACCATTTCCTTCCAAATGCTGGTTGAGTCAGGTCCTGAGGCTAGGCTGAGTGTTAGCTCTGTTGCAACTACTGAGAATCTGATTCGTACAACCGTGCGGAGGATCAAAGATTTGTTTCCTTGTCAGACTGCTTGA
Protein Sequence
- >AT2G32370.1
MSQSNMVPVANNGDNNNDNENNNNNNNNGGTDNTNAGNDSGDQDFDSGNTSSGNHGEGLGNNQAPRHKKKKYNRHTQLQISEMEAFFRECPHPDDKQRYDLSAQLGLDPVQIKFWFQNKRTQNKNQQERFENSELRNLNNHLRSENQRLREAIHQALCPKCGGQTAIGEMTFEEHHLRILNARLTEEIKQLSVTAEKISRLTGIPVRSHPRVSPPNPPPNFEFGMGSKGNVGNHSRETTGPADANTKPIIMELAFGAMEELLVMAQVAEPLWMGGFNGTSLALNLDEYEKTFRTGLGPRLGGFRTEASRETALVAMCPTGIVEMLMQENLWSTMFAGIVGRARTHEQIMADAAGNFNGNLQIMSAEYQVLSPLVTTRESYFVRYCKQQGEGLWAVVDISIDHLLPNINLKCRRRPSGCLIQEMHSGYSKVTWVEHVEVDDAGSYSIFEKLICTGQAFAANRWVGTLVRQCERISSILSTDFQSVDSGDHITLTNHGKMSMLKIAERIARTFFAGMTNATGSTIFSGVEGEDIRVMTMKSVNDPGKPPGVIICAATSFWLPAPPNTVFDFLREATHRHNWDVLCNGEMMHKIAEITNGIDKRNCASLLRHGHTSKSKMMIVQETSTDPTASFVLYAPVDMTSMDITLHGGGDPDFVVILPSGFAIFPDGTGKPGGKEGGSLLTISFQMLVESGPEARLSVSSVATTENLIRTTVRRIKDLFPCQTA