Information report for AT2G32230
Gene Details
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Functional Descriptions
- GO:0004526 — enables — ribonuclease P activity
- GO:0001682 — acts upstream of or within — tRNA 5-leader removal GO:0001682 11700 P other metabolic processes IMP RNAi experiments NONE Publication:501763424|PMID:25793367 TAIR 2015-04-21 AT2G32230 locus:2045432 AT2G32230 acts upstream of or within tRNA processing GO:0008033 7397 P other metabolic processes IDA in vitro assay NONE Publication:501737914|PMID:20473316 TAIR 2010-06-04 AT2G32230 locus:2045432 AT2G32230 acts upstream of or within tRNA 5-leader removal
- GO:0001682 — involved in — tRNA 5-leader removal GO:0001682 11700 P nucleobase-containing compound metabolic process IBA none PANTHER:PTN001005190|TAIR:locus:2045432|TAIR:locus:2141662|TAIR:locus:2059824 Communication:501741973 2023-06-07 AT2G32230 locus:2045432 AT2G32230 involved in tRNA 5-leader removal
- GO:0009507 — located in — chloroplast
- GO:0005739 — located in — mitochondrion
- GO:0008033 — acts upstream of or within — tRNA processing
Functional Keywords
Literature and News
- A single Arabidopsis organellar protein has RNase P activity. DOI: 10.1038/nsmb.1812 ; PMID: 20473316
- ribonucleases are key players in the control of plastid gene expression. DOI: 10.1093/jxb/err401 ; PMID: 22140236
- Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing. DOI: 10.1073/pnas.1209062109 ; PMID: 22991464
- tRNA processing by protein-only versus RNA-based RNase P: kinetic analysis reveals mechanistic differences. DOI: 10.1002/cbic.201200434 ; PMID: 22976545
- RNase P enzymes: divergent scaffolds for a conserved biological reaction. DOI: 10.4161/rna.24513 ; PMID: 23595059
- Pentatricopeptide repeat motifs in the processing enzyme PRORP1 in Arabidopsis thaliana play a crucial role in recognition of nucleotide bases at TψC loop in precursor tRNAs. DOI: 10.1016/j.bbrc.2014.07.030 ; PMID: 25034328
- Mechanistic Studies Reveal Similar Catalytic Strategies for Phosphodiester Bond Hydrolysis by Protein-only and RNA-dependent Ribonuclease P. DOI: 10.1074/jbc.M115.644831 ; PMID: 25817998
- Multiple RNA processing defects and impaired chloroplast function in plants deficient in the organellar protein-only RNase P enzyme. DOI: 10.1371/journal.pone.0120533 ; PMID: 25793367
- Crystallization and crystallographic analysis of an Arabidopsis nuclear proteinaceous RNase P. DOI: 10.1107/S2053230X15017033 ; PMID: 26527263
- Nuclear Protein-Only Ribonuclease P2 Structure and Biochemical Characterization Provide Insight into the Conserved Properties of tRNA 5' End Processing Enzymes. DOI: 10.1016/j.jmb.2015.11.025 ; PMID: 26655022
- Differential substrate recognition by isozymes of plant protein-only Ribonuclease P. DOI: 10.1261/rna.055541.115 ; PMID: 26966150
- The Restorer-of-fertility-like 2 pentatricopeptide repeat protein and RNase P are required for the processing of mitochondrial orf291 RNA in Arabidopsis. DOI: 10.1111/tpj.13185 ; PMID: 27122350
- Use of chemical modification and mass spectrometry to identify substrate-contacting sites in proteinaceous RNase P, a tRNA processing enzyme. DOI: 10.1093/nar/gkw391 ; PMID: 27166372
- Protein-only RNase P function in Escherichia coli: viability, processing defects and differences between PRORP isoenzymes. DOI: 10.1093/nar/gkx405 ; PMID: 28499021
- Cleavage of Model Substrates by Arabidopsis thaliana PRORP1 Reveals New Insights into Its Substrate Requirements. DOI: 10.1371/journal.pone.0160246 ; PMID: 27494328
- Molecular recognition of pre-tRNA by Arabidopsis protein-only Ribonuclease P. DOI: 10.1261/rna.061457.117 ; PMID: 28874505
- Determination of protein-only RNase P interactome in Arabidopsis mitochondria and chloroplasts identifies a complex between PRORP1 and another NYN domain nuclease. DOI: 10.1111/tpj.14458 ; PMID: 31319441
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Pentatricopeptide repeats of protein-only RNase P use a distinct mode to recognize conserved bases and structural elements of pre-tRNA. DOI: 10.1093/nar/gkaa627 ; PMID: 32719843
- Synthetic riboswitches for the analysis of tRNA processing by eukaryotic RNase P enzymes. DOI: 10.1261/rna.078814.121 ; PMID: 35022261
Gene Resources
- UniProt: A0A178VZD1
- EMBL: CACRSJ010000105, CACSHJ010000088, LUHQ01000002
- AlphaFoldDB: A0A178VZD1
- EnsemblPlants: AT2G32230.1, AT2G32230.2
- Gramene: AT2G32230.1, AT2G32230.2
- KEGG: ath:AT2G32230
- Orthologous matrix: CIDINPV
- ExpressionAtlas: AT2G32230
- InterPro: IPR002885, IPR011990, IPR031595
- PANTHER: PTHR13547, PTHR13547:SF1
- PROSITE: PS51375
- Gene3D: 1.25.40.10, 3.40.50.11980
- OrthoDB: A0A178VZD1
- SWISS-MODEL: A0A178VZD1
- Conserved Domain Database: cd18671
Sequences
cDNA Sequence
- >AT2G32230.1
TTAGAAAGTAGCATCCAAAATCTCTATCCCATGACACTCTTATATCTCAATCTATTAACCTTGGAGATAATCCATGGTGAATCCTGAAGGACAAGCTGTGTCGACCAAAGTCGTCTTTTTATCTTTTCCAATTTTCCCACCAGAAAGAAAGTTTCTCTCTGGTTCGATATGAATTCGACTGAGAATTAATTCTTCAACAAGCTTGAGAGCAAAGTTATGCTGCGTTTAACTTGTTTTACACCTTCTTTTTCTCGAGCGTGTTGTCCTTTATTTGCAATGATGCTCAAAGTCCCATCTGTTCATCTCCACCATCCTAGATTTTCTCCATTTCGTTTCTACCATACTTCCTTACTTGTGAAAGGCACCAGAGATAGACGTCTTATTCTTGTTGAGCGTAGCAGACATCTATGTACATTGCCTCTCGCTGCTGCTAAACAATCAGCAGCTTCTCCTTCTGAAAACTTATCGAGGAAAGCGAAGAAGAAAGCTATTCAACAGTCTCCTGAAGCATTGCTGAAACAAAAGCTAGATATGTGCTCTAAGAAAGGTGATGTCTTGGAAGCTCTTCGCTTGTATGATGAGGCAAGACGCAATGGCGTGCAGCTTAGCCAGTACCATTATAATGTGTTGCTTTATGTATGCTCGTTGGCTGAGGCAGCAACAGAGTCGTCTCCAAATCCAGGGCTTAGTAGGGGTTTTGATATTTTTAAGCAGATGATTGTTGATAAAGTTGTTCCCAATGAAGCTACATTTACAAACGGTGCTAGACTCGCAGTTGCAAAGGATGACCCGGAAATGGCTTTCGATATGGTGAAACAGATGAAAGCCTTTGGTATTCAACCAAGGTTGAGATCCTATGGACCTGCCCTTTTTGGTTTCTGTAGGAAAGGTGATGCAGACAAAGCTTATGAAGTCGATGCGCATATGGTTGAATCAGAGGTAGTCCCTGAAGAACCTGAGCTTGCTGCTCTTTTGAAAGTTAGTATGGATACAAAGAACGCAGACAAGGTCTATAAGACGTTGCAGCGATTGAGAGATTTGGTGAGACAGGTTTCTAAATCGACTTTTGATATGATTGAGGAGTGGTTTAAATCTGAAGTAGCTACAAAAACTGGAGTGAAGAAATGGGATGTGAAGAAAATAAGGGATGCGGTTGTGAGTGGTGGTGGTGGGTGGCATGGACAAGGATGGCTGGGGACTGGCAAATGGAATGTGAAAAGAACAGAGATGGATGAGAATGGTGTATGTAAATGTTGCAAAGAGAAGCTTGTTTGTATTGATATCAATCCGGTTGAGACAGAAACCTTTGCTGCATCGTTGACCCGATTGGCATGTGAAAGAGAAGTCAAGGCTAATTTTAATCAGTTTCAGGAATGGCTGGAAAGACATGGACCGTTTGATGCAGTCATTGATGGAGCCAACATGGGCTTAGTCAACCAGCGCAGTTTCAGCTTCTTCCAGCTTAACAACACTGTCCAAAGATGCCAACAAATAAGCCCGTCGAAAAGGTTACCACTTGTGATCCTGCACAAGAGTCGTGTAAATGGAGGTCCAGCTACATACCCTAAAAACAGAGCCTTGCTAGAGAAATGGAAAAACGCTGGTGCTCTCTATGCTACCCCTCCTGGCTCAAACGATGATTGGTATTGGCTTTACGCTGCGGTAAGTTGCAAATGTTTGTTAGTAACAAACGATGAGATGAGAGACCATCTCTTCCAGTTACTTGGAAATAGTTTCTTCCCAAGGTGGAAAGAGAAGCATCAGGTTCGGATCTCTGTCACTAGAGAAGATGGACTCAAACTTAATATGCCACCTCCATACTCCATTGTTATACAGGAGTCTGAAGATGGAACCTGGCATGTACCAATGAGCGTAGAAGATGATCTCCAAACATCAAGGCAATGGTTATGCGCAAAAAGATCCAAAACACCTTGAATTTTTTTAATCCTTGTTGTATCATCTGACATTGATTCTTCATTTCTTAATAAATTTGTGTTTCATTAACCACAAGATT - >AT2G32230.2
TTAGAAAGTAGCATCCAAAATCTCTATCCCATGACACTCTTATATCTCAATCTATTAACCTTGGAGATAATCCATGGTGAATCCTGAAGGACAAGCTGTGTCGACCAAAGTCGTCTTTTTATCTTTTCCAATTTTCCCACCAGAAAGAAAGTTTCTCTCTGGTTCGATATGAATTCGACTGAGAATTAATTCTTCAACAAGCTTGAGAGCAAAGTTATGCTGCGTTTAACTTGTTTTACACCTTCTTTTTCTCGAGCGTGTTGTCCTTTATTTGCAATGATGCTCAAAGTCCCATCTGTTCATCTCCACCATCCTAGATTTTCTCCATTTCGTTTCTACCATACTTCCTTACTTGTGAAAGGCACCAGAGATAGACGTCTTATTCTTGTTGAGCGTAGCAGACATCTATGTACATTGCCTCTCGCTGCTGCTAAACAATCAGCAGCTTCTCCTTCTGAAAACTTATCGAGGAAAGCGAAGAAGAAAGCTATTCAACAGTCTCCTGAAGCATTGCTGAAACAAAAGCTAGATATGTGCTCTAAGAAAGGTGATGTCTTGGAAGCTCTTCGCTTGTATGATGAGGCAAGACGCAATGGCGTGCAGCTTAGCCAGTACCATTATAATGTGTTGCTTTATGTATGCTCGTTGGCTGAGGCAGCAACAGAGTCGTCTCCAAATCCAGGGCTTAGTAGGGGTTTTGATATTTTTAAGCAGATGATTGTTGATAAAGTTGTTCCCAATGAAGCTACATTTACAAACGGTGCTAGACTCGCAGTTGCAAAGGATGACCCGGAAATGGCTTTCGATATGGTGAAACAGATGAAAGCCTTTGGTATTCAACCAAGGTTGAGATCCTATGGACCTGCCCTTTTTGGTTTCTGTAGGAAAGGTGATGCAGACAAAGCTTATGAAGTCGATGCGCATATGGTTGAATCAGAGGTAGTCCCTGAAGAACCTGAGCTTGCTGCTCTTTTGAAAGTTAGTATGGATACAAAGAACGCAGACAAGGTCTATAAGACGTTGCAGCGATTGAGAGATTTGGTGAGACAGGTTTCTAAATCGACTTTTGATATGATTGAGGAGTGGTTTAAATCTGAAGTAGCTACAAAAACTGGAGTGAAGAAATGGGATGTGAAGAAAATAAGGGATGCGGTTGTGAGTGGTGGTGGTGGGTGGCATGGACAAGGATGGCTGGGGACTGGCAAATGGAATGTGAAAAGAACAGAGATGGATGAGAATGGTGTATGTAAATGTTGCAAAGAGAAGCTTGTTTGTATTGATATCAATCCGGTTGAGACAGAAACCTTTGCTGCATCGTTGACCCGATTGGCATGTGAAAGAGAAGTCAAGGCTAATTTTAATCAGTTTCAGGAATGGCTGGAAAGACATGGACCGTTTGATGCAGTCATTGATGGAGCCAACATGGGCTTAGTCAACCAGCGCAGTTTCAGCTTCTTCCAGCTTAACAACACTGTCCAAAGATGCCAACAAATAAGCCCGTCGAAAAGGTTACCACTTGTGATCCTGCACAAGAGTCGTGTAAATGGAGGTCCAGCTACATACCCTAAAAACAGAGCCTTGCTAGAGAAATGGAAAAACGCTGGTGCTCTCTATGCTACCCCTCCTGGCTCAAACGATGATTGGTATTGGCTTTACGCTGCGGTAAGTTGCAAATGTTTGTTAGTAACAAACGATGAGATGAGAGACCATCTCTTCCAGTTACTTGGAAATAGTTTCTTCCCAAGGTGGAAAGAGAAGCATCAGGTTCGGATCTCTGTCACTAGAGAAGATGGACTCAAACTTAATATGCCACCTCCATACTCCATTGTTATACAGGAGTCTGAAGATGGAACCTGGCATGTACCAATGAGCGTAGAAGATGATCTCCAAACATCAAGGCAATGGTTATGCGCAAAAAGATCCAAAACACCTTGAATTTTTTTAATCCTTGTTGTATCATCTGACATTGATTCTTCATTTCTTAATAAATTTGTGTTTCATTAACCACAAGATT
CDS Sequence
- >AT2G32230.1
ATGCTGCGTTTAACTTGTTTTACACCTTCTTTTTCTCGAGCGTGTTGTCCTTTATTTGCAATGATGCTCAAAGTCCCATCTGTTCATCTCCACCATCCTAGATTTTCTCCATTTCGTTTCTACCATACTTCCTTACTTGTGAAAGGCACCAGAGATAGACGTCTTATTCTTGTTGAGCGTAGCAGACATCTATGTACATTGCCTCTCGCTGCTGCTAAACAATCAGCAGCTTCTCCTTCTGAAAACTTATCGAGGAAAGCGAAGAAGAAAGCTATTCAACAGTCTCCTGAAGCATTGCTGAAACAAAAGCTAGATATGTGCTCTAAGAAAGGTGATGTCTTGGAAGCTCTTCGCTTGTATGATGAGGCAAGACGCAATGGCGTGCAGCTTAGCCAGTACCATTATAATGTGTTGCTTTATGTATGCTCGTTGGCTGAGGCAGCAACAGAGTCGTCTCCAAATCCAGGGCTTAGTAGGGGTTTTGATATTTTTAAGCAGATGATTGTTGATAAAGTTGTTCCCAATGAAGCTACATTTACAAACGGTGCTAGACTCGCAGTTGCAAAGGATGACCCGGAAATGGCTTTCGATATGGTGAAACAGATGAAAGCCTTTGGTATTCAACCAAGGTTGAGATCCTATGGACCTGCCCTTTTTGGTTTCTGTAGGAAAGGTGATGCAGACAAAGCTTATGAAGTCGATGCGCATATGGTTGAATCAGAGGTAGTCCCTGAAGAACCTGAGCTTGCTGCTCTTTTGAAAGTTAGTATGGATACAAAGAACGCAGACAAGGTCTATAAGACGTTGCAGCGATTGAGAGATTTGGTGAGACAGGTTTCTAAATCGACTTTTGATATGATTGAGGAGTGGTTTAAATCTGAAGTAGCTACAAAAACTGGAGTGAAGAAATGGGATGTGAAGAAAATAAGGGATGCGGTTGTGAGTGGTGGTGGTGGGTGGCATGGACAAGGATGGCTGGGGACTGGCAAATGGAATGTGAAAAGAACAGAGATGGATGAGAATGGTGTATGTAAATGTTGCAAAGAGAAGCTTGTTTGTATTGATATCAATCCGGTTGAGACAGAAACCTTTGCTGCATCGTTGACCCGATTGGCATGTGAAAGAGAAGTCAAGGCTAATTTTAATCAGTTTCAGGAATGGCTGGAAAGACATGGACCGTTTGATGCAGTCATTGATGGAGCCAACATGGGCTTAGTCAACCAGCGCAGTTTCAGCTTCTTCCAGCTTAACAACACTGTCCAAAGATGCCAACAAATAAGCCCGTCGAAAAGGTTACCACTTGTGATCCTGCACAAGAGTCGTGTAAATGGAGGTCCAGCTACATACCCTAAAAACAGAGCCTTGCTAGAGAAATGGAAAAACGCTGGTGCTCTCTATGCTACCCCTCCTGGCTCAAACGATGATTGGTATTGGCTTTACGCTGCGGTAAGTTGCAAATGTTTGTTAGTAACAAACGATGAGATGAGAGACCATCTCTTCCAGTTACTTGGAAATAGTTTCTTCCCAAGGTGGAAAGAGAAGCATCAGGTTCGGATCTCTGTCACTAGAGAAGATGGACTCAAACTTAATATGCCACCTCCATACTCCATTGTTATACAGGAGTCTGAAGATGGAACCTGGCATGTACCAATGAGCGTAGAAGATGATCTCCAAACATCAAGGCAATGGTTATGCGCAAAAAGATCCAAAACACCTTGA - >AT2G32230.2
ATGCTGCGTTTAACTTGTTTTACACCTTCTTTTTCTCGAGCGTGTTGTCCTTTATTTGCAATGATGCTCAAAGTCCCATCTGTTCATCTCCACCATCCTAGATTTTCTCCATTTCGTTTCTACCATACTTCCTTACTTGTGAAAGGCACCAGAGATAGACGTCTTATTCTTGTTGAGCGTAGCAGACATCTATGTACATTGCCTCTCGCTGCTGCTAAACAATCAGCAGCTTCTCCTTCTGAAAACTTATCGAGGAAAGCGAAGAAGAAAGCTATTCAACAGTCTCCTGAAGCATTGCTGAAACAAAAGCTAGATATGTGCTCTAAGAAAGGTGATGTCTTGGAAGCTCTTCGCTTGTATGATGAGGCAAGACGCAATGGCGTGCAGCTTAGCCAGTACCATTATAATGTGTTGCTTTATGTATGCTCGTTGGCTGAGGCAGCAACAGAGTCGTCTCCAAATCCAGGGCTTAGTAGGGGTTTTGATATTTTTAAGCAGATGATTGTTGATAAAGTTGTTCCCAATGAAGCTACATTTACAAACGGTGCTAGACTCGCAGTTGCAAAGGATGACCCGGAAATGGCTTTCGATATGGTGAAACAGATGAAAGCCTTTGGTATTCAACCAAGGTTGAGATCCTATGGACCTGCCCTTTTTGGTTTCTGTAGGAAAGGTGATGCAGACAAAGCTTATGAAGTCGATGCGCATATGGTTGAATCAGAGGTAGTCCCTGAAGAACCTGAGCTTGCTGCTCTTTTGAAAGTTAGTATGGATACAAAGAACGCAGACAAGGTCTATAAGACGTTGCAGCGATTGAGAGATTTGGTGAGACAGGTTTCTAAATCGACTTTTGATATGATTGAGGAGTGGTTTAAATCTGAAGTAGCTACAAAAACTGGAGTGAAGAAATGGGATGTGAAGAAAATAAGGGATGCGGTTGTGAGTGGTGGTGGTGGGTGGCATGGACAAGGATGGCTGGGGACTGGCAAATGGAATGTGAAAAGAACAGAGATGGATGAGAATGGTGTATGTAAATGTTGCAAAGAGAAGCTTGTTTGTATTGATATCAATCCGGTTGAGACAGAAACCTTTGCTGCATCGTTGACCCGATTGGCATGTGAAAGAGAAGTCAAGGCTAATTTTAATCAGTTTCAGGAATGGCTGGAAAGACATGGACCGTTTGATGCAGTCATTGATGGAGCCAACATGGGCTTAGTCAACCAGCGCAGTTTCAGCTTCTTCCAGCTTAACAACACTGTCCAAAGATGCCAACAAATAAGCCCGTCGAAAAGGTTACCACTTGTGATCCTGCACAAGAGTCGTGTAAATGGAGGTCCAGCTACATACCCTAAAAACAGAGCCTTGCTAGAGAAATGGAAAAACGCTGGTGCTCTCTATGCTACCCCTCCTGGCTCAAACGATGATTGGTATTGGCTTTACGCTGCGGTAAGTTGCAAATGTTTGTTAGTAACAAACGATGAGATGAGAGACCATCTCTTCCAGTTACTTGGAAATAGTTTCTTCCCAAGGTGGAAAGAGAAGCATCAGGTTCGGATCTCTGTCACTAGAGAAGATGGACTCAAACTTAATATGCCACCTCCATACTCCATTGTTATACAGGAGTCTGAAGATGGAACCTGGCATGTACCAATGAGCGTAGAAGATGATCTCCAAACATCAAGGCAATGGTTATGCGCAAAAAGATCCAAAACACCTTGA
Protein Sequence
- >AT2G32230.1
MLRLTCFTPSFSRACCPLFAMMLKVPSVHLHHPRFSPFRFYHTSLLVKGTRDRRLILVERSRHLCTLPLAAAKQSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSKTP - >AT2G32230.2
MLRLTCFTPSFSRACCPLFAMMLKVPSVHLHHPRFSPFRFYHTSLLVKGTRDRRLILVERSRHLCTLPLAAAKQSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSKTP