Information report for AT2G30620
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
Literature and News
- Using genomic resources to guide research directions. The arabinogalactan protein gene family as a test case. DOI: 10.1104/pp.003459 ; PMID: 12177459
- Cell cycle-regulated gene expression in Arabidopsis. DOI: 10.1074/jbc.M207570200 ; PMID: 12169696
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. DOI: 10.1091/mbc.e04-09-0791 ; PMID: 15496452
- Suppression of histone H1 genes in Arabidopsis results in heritable developmental defects and stochastic changes in DNA methylation. DOI: 10.1534/genetics.104.031997 ; PMID: 15489532
- Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis. DOI: 10.1101/gr.3176505 ; PMID: 15805490
- Microarray expression profiling and functional characterization of AtTPS genes: duplicated Arabidopsis thaliana sesquiterpene synthase genes At4g13280 and At4g13300 encode root-specific and wound-inducible (Z)-gamma-bisabolene synthases. DOI: 10.1016/j.abb.2005.09.019 ; PMID: 16297850
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- Arabidopsis chromatin-associated HMGA and HMGB use different nuclear targeting signals and display highly dynamic localization within the nucleus. DOI: 10.1105/tpc.106.047274 ; PMID: 17114349
- The expression level of the chromatin-associated HMGB1 protein influences growth, stress tolerance, and transcriptome in Arabidopsis. DOI: 10.1016/j.jmb.2008.09.014 ; PMID: 18822296
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. DOI: 10.1104/pp.16.00214 ; PMID: 28298478
- A unified phylogeny-based nomenclature for histone variants. DOI: 10.1186/1756-8935-5-7 ; PMID: 22650316
- Loss of linker histone H1 in the maternal genome influences DEMETER-mediated demethylation and affects the endosperm DNA methylation landscape. DOI: 10.3389/fpls.2022.1070397 ; PMID: 36618671
- Linker histone H1 modulates defense priming and immunity in plants. DOI: 10.1093/nar/gkad106 ; PMID: 36840717
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. DOI: 10.1091/mbc.e04-09-0791 ; PMID: 15496452
Gene Resources
Homologs
- Actinidia chinensis Achn115281
- Arachis hypogaea Ahy009161
- Oryza sativa OsATH1
- Ziziphus jujuba XP_015890673.1
Sequences
cDNA Sequence
- >AT2G30620.1
AATCGATTAAACACTCAAACAAAACCTTACAGAATTATCTACACAATGAAAAAAACAAAATCAAAATCCATAAAGTAAACAAAAAGTTATGATAAAATCAATCAAAGCTAAAAGCACACCAATACAATACACAAAAGCACCTATCCACATCCATTAACCTCCGCATCCTTACATTCGTAATCCTAAATTATAAACCGTCGATAGATTTAAATCCAACGGTTGAAATTCAAACCTGAGTTGATACACCGATCCGAGTACTCATCATTTTAACCAATCAGAGAAGAGATTACAAACTCTGTCTCATAAACACATCTGACTATATAAACATCATTCCCATAGTTCTTCTCCTTCTCCTCATCACAAAATTCTCCGACGCATTACATTTTCTTCCGATCAATACAGAGAGATCAGTTTCTGAGAGAGAAGAAGATGTCTATAGAGGAAGAAAACGTTCCAACGACTGTTGACTCAGGAGCTGCCGATACAACGGTGAAATCTCCGGAGAAGAAACCGGCGGCGAAAGGTGGTAAATCTAAGAAGACGACGACGGCTAAAGCAACGAAGAAGCCTGTGAAAGCTGCTGCTCCAACGAAGAAGAAAACAACTTCCTCTCACCCTACCTATGAAGAGATGATTAAAGATGCGATTGTAACGTTGAAGGAGAGAACTGGATCTAGTCAATACGCGATTCAGAAATTCATAGAGGAGAAACATAAATCACTGCCTCCTACTTTTAGGAAGCTTTTGCTTGTGAATCTCAAGAGACTTGTTGCTTCTGAGAAATTGGTTAAAGTCAAAGCTTCTTTTAAGATTCCTTCTGCTAGATCCGCAGCAACACCTAAACCGGCTGCTCCGGTTAAGAAGAAGGCAACTGTAGTAGCTAAACCTAAGGGTAAGGTTGCTGCTGCTGTTGCTCCTGCTAAAGCTAAAGCGGCGGCTAAAGGAACTAAGAAGCCTGCGGCTAAAGTTGTTGCTAAGGCTAAGGTTACTGCTAAACCTAAGGCTAAGGTTACTGCTGCTAAACCTAAGTCTAAGTCTGTTGCTGCTGTTTCCAAGACTAAAGCTGTTGCTGCTAAGCCTAAGGCTAAGGAGAGACCAGCTAAAGCTTCTAGGACTTCGACTAGAACATCTCCAGGGAAAAAAGTTGCTGCTCCTGCTAAGAAAGTGGCTGTGACTAAGAAGGCTCCGGCTAAGAGTGTGAAGGTGAAGTCTCCGGCGAAGAGAGCTTCGACTAGGAAGGCTAAGAAGTGAAGAAGATTGGTTTAGGATAGGTTTTGGGGGGAGATTGAATACATGGTGGTGGTTAGCTTCTATAGGGTAGTCTTGTATAATTGAATCATCCTTGAAGGAGCTTGCTTTCCAAAGTTTTTTACTTGTTTCTTTGGTTTCTTCTTGAAACTTTTTTTTTTCTTCTTTGTAAGTTTTGGTTTGTTTGAATTTTAAGCTTTTTGATCAATAGCTATAATGTGATGGTTTCTTCACTCTTTTACTTGTTCAGAAACTGTTATAGAAGCTTTCCATTTCAAGCAAATGACATTCACATGTTTAGTTCTGTCTTACTGTATCATTGTCTTTGTGGATTCTTCAGTTGTGGTTTTGAAGGAACTGGTCTCTCTTAAGAACAAGCTTGACCAATGTTAAGGTGAGATTCATATGTTTTCCTCTG - >AT2G30620.2
AATCGATTAAACACTCAAACAAAACCTTACAGAATTATCTACACAATGAAAAAAACAAAATCAAAATCCATAAAGTAAACAAAAAGTTATGATAAAATCAATCAAAGCTAAAAGCACACCAATACAATACACAAAAGCACCTATCCACATCCATTAACCTCCGCATCCTTACATTCGTAATCCTAAATTATAAACCGTCGATAGATTTAAATCCAACGGTTGAAATTCAAACCTGAGTTGATACACCGATCCGAGTACTCATCATTTTAACCAATCAGAGAAGAGATTACAAACTCTGTCTCATAAACACATCTGACTATATAAACATCATTCCCATAGTTCTTCTCCTTCTCCTCATCACAAAATTCTCCGACGCATTACATTTTCTTCCGATCAATACAGAGAGATCAGTTTCTGAGAGAGAAGAAGATGTCTATAGAGGAAGAAAACGTTCCAACGACTGTTGACTCAGGAGCTGCCGATACAACGGTGAAATCTCCGGAGAAGAAACCGGCGGCGAAAGGTGGTAAATCTAAGAAGACGACGACGGCTAAAGCAACGAAGAAGCCTGTGAAAGCTGCTGCTCCAACGAAGAAGAAAACAACTTCCTCTCACCCTACCTATGAAGAGATGATTAAAGATGCGATTGTAACGTTGAAGGAGAGAACTGGATCTAGTCAATACGCGATTCAGAAATTCATAGAGGAGAAACATAAATCACTGCCTCCTACTTTTAGGAAGCTTTTGCTTGTGAATCTCAAGAGACTTGTTGCTTCTGAGAAATTGGTTAAAGTCAAAGCTTCTTTTAAGATTCCTTCTGCTAGATCCGCAGCAACACCTAAACCGGCTGCTCCGGTTAAGAAGAAGGCAACTGTAGTAGCTAAACCTAAGGGTAAGGTTGCTGCTGCTGTTGCTCCTGCTAAAGCTAAAGCGGCGGCTAAAGGAACTAAGAAGCCTGCGGCTAAAGTTGTTGCTAAGGCTAAGGTTACTGCTAAACCTAAGGCTAAGGTTACTGCTGCTAAACCTAAGTCTAAGTCTGTTGCTGCTGTTTCCAAGACTAAAGCTGTTGCTGCTAAGCCTAAGGCTAAGGAGAGACCAGCTAAAGCTTCTAGGACTTCGACTAGAACATCTCCAGGGAAAAAAGTTGCTGCTCCTGCTAAGAAAGTGGCTGTGACTAAGAAGGCTCCGGCTAAGAGTGTGAAGGTGAAGTCTCCGGCGAAGAGAGCTTCGACTAGGAAGGCTAAGAAGTGAAGAAGATTGGTTTAGGATAGGTTTTGGGGGGAGATTGAATACATGGTGGTGGTTAGCTTCTATAGGGTAGTCTTGTATAATTGAATCATCCTTGAAGGAGCTTGCTTTCCAAAGTTTTTTACTTGTTTCTTTGGTTTCTTCTTGAAACTTTTTTTTTTCTTCTTTGTAAGTTTTGGTTTGTTTGAATTTTAAGCTTTTTGATCAATAGCTATAATGTGATGGTTTCTTCACTCTTTTACTTGTTCAGAAACTGTTATAGAAGCTTTCCATTTCAAGCAAATGACATTCACATGTTTAGTTCTGTCTTACTGTATCATTGTCTTTGTGGATTCTTCAGTTGTGGTTTTGAAGGAACTGGTCTCTCTTAAGAACAAGCTTGACCAATGTTAAGGTGAGATTCATATGTTTTCCTCTG
CDS Sequence
- >AT2G30620.1
ATGTCTATAGAGGAAGAAAACGTTCCAACGACTGTTGACTCAGGAGCTGCCGATACAACGGTGAAATCTCCGGAGAAGAAACCGGCGGCGAAAGGTGGTAAATCTAAGAAGACGACGACGGCTAAAGCAACGAAGAAGCCTGTGAAAGCTGCTGCTCCAACGAAGAAGAAAACAACTTCCTCTCACCCTACCTATGAAGAGATGATTAAAGATGCGATTGTAACGTTGAAGGAGAGAACTGGATCTAGTCAATACGCGATTCAGAAATTCATAGAGGAGAAACATAAATCACTGCCTCCTACTTTTAGGAAGCTTTTGCTTGTGAATCTCAAGAGACTTGTTGCTTCTGAGAAATTGGTTAAAGTCAAAGCTTCTTTTAAGATTCCTTCTGCTAGATCCGCAGCAACACCTAAACCGGCTGCTCCGGTTAAGAAGAAGGCAACTGTAGTAGCTAAACCTAAGGGTAAGGTTGCTGCTGCTGTTGCTCCTGCTAAAGCTAAAGCGGCGGCTAAAGGAACTAAGAAGCCTGCGGCTAAAGTTGTTGCTAAGGCTAAGGTTACTGCTAAACCTAAGGCTAAGGTTACTGCTGCTAAACCTAAGTCTAAGTCTGTTGCTGCTGTTTCCAAGACTAAAGCTGTTGCTGCTAAGCCTAAGGCTAAGGAGAGACCAGCTAAAGCTTCTAGGACTTCGACTAGAACATCTCCAGGGAAAAAAGTTGCTGCTCCTGCTAAGAAAGTGGCTGTGACTAAGAAGGCTCCGGCTAAGAGTGTGAAGGTGAAGTCTCCGGCGAAGAGAGCTTCGACTAGGAAGGCTAAGAAGTGA - >AT2G30620.2
ATGTCTATAGAGGAAGAAAACGTTCCAACGACTGTTGACTCAGGAGCTGCCGATACAACGGTGAAATCTCCGGAGAAGAAACCGGCGGCGAAAGGTGGTAAATCTAAGAAGACGACGACGGCTAAAGCAACGAAGAAGCCTGTGAAAGCTGCTGCTCCAACGAAGAAGAAAACAACTTCCTCTCACCCTACCTATGAAGAGATGATTAAAGATGCGATTGTAACGTTGAAGGAGAGAACTGGATCTAGTCAATACGCGATTCAGAAATTCATAGAGGAGAAACATAAATCACTGCCTCCTACTTTTAGGAAGCTTTTGCTTGTGAATCTCAAGAGACTTGTTGCTTCTGAGAAATTGGTTAAAGTCAAAGCTTCTTTTAAGATTCCTTCTGCTAGATCCGCAGCAACACCTAAACCGGCTGCTCCGGTTAAGAAGAAGGCAACTGTAGTAGCTAAACCTAAGGGTAAGGTTGCTGCTGCTGTTGCTCCTGCTAAAGCTAAAGCGGCGGCTAAAGGAACTAAGAAGCCTGCGGCTAAAGTTGTTGCTAAGGCTAAGGTTACTGCTAAACCTAAGGCTAAGGTTACTGCTGCTAAACCTAAGTCTAAGTCTGTTGCTGCTGTTTCCAAGACTAAAGCTGTTGCTGCTAAGCCTAAGGCTAAGGAGAGACCAGCTAAAGCTTCTAGGACTTCGACTAGAACATCTCCAGGGAAAAAAGTTGCTGCTCCTGCTAAGAAAGTGGCTGTGACTAAGAAGGCTCCGGCTAAGAGTGTGAAGGTGAAGTCTCCGGCGAAGAGAGCTTCGACTAGGAAGGCTAAGAAGTGA
Protein Sequence
- >AT2G30620.1
MSIEEENVPTTVDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVKSPAKRASTRKAKK - >AT2G30620.2
MSIEEENVPTTVDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVKSPAKRASTRKAKK