Gene Details:
- Gene ID: AT2G30370
- Gene Symbol: AtEPFL6, CHAL, EPFL6
- Gene Name: CHALLAH, epidermis patterning factor (EPF1)-like 6
- Description: allergen-like protein;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Germplasm Phenotype:
- CS67112 — Unlike tmm-1, produces stomata on hypocotyl.
- CS67115 — Produces numerous, clustered stomata on hypocotyl.
- CS67116 — Produces stomata on hypocotyl. Plants have reduced height, shortened internodes, and shortened pedicels.
- CS67118 — Produces numerous, clustered stomata on hypocotyl and inflorescence stem. Plants have reduced height, shortened internodes, and shortened pedicels.
- CS67119 — No visible phenotype.
- CS67122 — No visible phenotype.
- CS67123 — Reduced height, shortened internodes, and shortened pedicels.
- CS67125 — Reduced height, shortened internodes, and shortened pedicels. Mutant plants produce more sterile siliques than wild type but are not fully sterile.
- epfl1 epfl2 epfl4 epfl6 — Increased shoot apical meristem width, decreased number of leaf primordia (reduced leaf initiation rate).Plants are sterile.
- epfl4-1 epfl5-1 epfl6-2 — Reduced fertility, short stamen filaments due to reduced cell proliferation.
- tmm;chal-1 — Mutants produce stomata on the hypocotyl and also produce small groups of hypocotyl cells in an arrangement that resembles braided challah bread.
Literature:
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Regional specification of stomatal production by the putative ligand CHALLAH. DOI: 10.1242/dev.040931 ; PMID: 20056678
- Positive and negative peptide signals control stomatal density. DOI: 10.1007/s00018-011-0685-7 ; PMID: 21509541
- Generation of signaling specificity in Arabidopsis by spatially restricted buffering of ligand-receptor interactions. DOI: 10.1105/tpc.111.086637 ; PMID: 21862708
- Regulation of inflorescence architecture by intertissue layer ligand-receptor communication between endodermis and phloem. DOI: 10.1073/pnas.1117537109 ; PMID: 22474391
- Regulation of plant vascular stem cells by endodermis-derived EPFL-family peptide hormones and phloem-expressed ERECTA-family receptor kinases. DOI: 10.1093/jxb/ert196 ; PMID: 23881395
- Evolutionary relationship and structural characterization of the EPF/EPFL gene family. DOI: 10.1371/journal.pone.0065183 ; PMID: 23755192
- A receptor-like protein acts as a specificity switch for the regulation of stomatal development. DOI: 10.1101/gad.297580.117 ; PMID: 28536146
- Coordination of Chloroplast Development through the Action of the GNC and GLK Transcription Factor Families. DOI: 10.1104/pp.18.00414 ; PMID: 30002259
- Organ-specific genetic interactions between paralogues of the PXY and ER receptor kinases enforce radial patterning in Arabidopsis vascular tissue. DOI: 10.1242/dev.177105 ; PMID: 31043420
- Peptide Signaling Pathways Regulate Plant Vascular Development. DOI: 10.3389/fpls.2021.719606 ; PMID: 34539713
- EPFL peptide signalling ensures robust self-pollination success under cool temperature stress by aligning the length of the stamen and pistil. DOI: 10.1111/pce.14498 ; PMID: 36419209
- An EPFL peptide signaling pathway promotes stamen elongation via enhancing filament cell proliferation to ensure successful self-pollination in Arabidopsis thaliana. DOI: 10.1111/nph.18806 ; PMID: 36772858
- Signaling by the EPFL-ERECTA family coordinates female germline specification through the BZR1 family in Arabidopsis. DOI: 10.1093/plcell/koad032 ; PMID: 36748257
- The EPFL-ERf-SERK signaling controls integument development in Arabidopsis. DOI: 10.1111/nph.18701 ; PMID: 36564978
- EPFL Signals in the Boundary Region of the SAM Restrict Its Size and Promote Leaf Initiation. DOI: 10.1104/pp.18.00714 ; PMID: 30409857
Sequences:
cDNA Sequence
- >AT2G30370.2
CAATAATAATAAACTAAGTGAAACCCTAATCTTGAGTACTTATGATATGTTAAACCCTACACACATGCATATGAAAGAACTTAATCAAGAAATATAACTACATATAAAATATACAATAGATAAACATATGAGTGTGTATGTGTATATATATGTATAGCTTGGAAGATTGCTAAAAGCAATTTCTGGTGAAAGGAAGGGTACAATGACAGAGAGAATAGGGTGCAGGAGAATCTAACTCCCAAACTTAGCAATGCTTAGGTACCTTTCTTAATTACTTCTCTCTTCTTACACTCTTTCTCTCATTTCCCACTCATATACTATTTTATCTTCTTATTTCTTTTCTTATTATCCTTTTATATATAAATTTCCATATTTAATCACACATTTTTGCAGTTAACCCCTCCTTGTTCTATCTCTCATAGTCGACTCCATTTGCTCTTTCTCACTCTCAACCACTCCCACTACTCACTCTCGTTTTTTGAGAAAACCCAAATCATAAAAACCAAAAGACATTCAATATTCCTTTTCAATAATCTTTTCTTGATTTCCATTTTCATCTCAAGTTTTTTAAAAACCCACCAAGTTTTTTTTTTCGCATGGATGAGGAGATCATAACTAATCTCTGCTAGCCTCTTCTTAGGTTTTCAGAAAGTTTCGTAATTATGGGTTTCGAGAGAACATCATCATCATTATCATTATTATCATCATCATTACCATCATCATTACAACCATCAGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATTTATTGCTACTCTTCTTCGTCCTCTGTGTCATTGCCACCTTCACTATAACTCCCACTTCGACTTCTTCTCCATATAATAGGAATTCTAACTCTGGGACACTAGGGAACTTCTATGCAAAGGAGGAAGGCAAGAGTACCGTAGTGATAAAGAAGACTAGGAAGATCGGTGACCGGAGCAAGGAGGCAGAGCTACGGAGGATTCTAAGGGGATTGGGCTCATCTCCACCACGGTGCTCCTCCAAGTGTGGAAGATGCACTCCGTGCAAGCCTGTTCACGTTCCGGTGCCTCCCGGCACGCCTGTCACCGCCGAATACTACCCGGAAGCTTGGAGATGCAAGTGCGGCAACAAGTTGTACATGCCATGATCTTTTATAATATATATACTCACATATATACATTATATATATGAATTATATGCATGTTCGTAGTTATATCTTGCCTCTACTCCAAATATTTATTATACATTGACATGTTGCTAGGACAACCTCAACGTGAAACTTTTGCTGATAAATTGATTGATGATGCTCGTATAGACGATATGACGTTCTTAGCATATGATTTCGTATATGGTGACATAATTCATGAATAATATC - >AT2G30370.1
CAATAATAATAAACTAAGTGAAACCCTAATCTTGAGTACTTATGATATGTTAAACCCTACACACATGCATATGAAAGAACTTAATCAAGAAATATAACTACATATAAAATATACAATAGATAAACATATGAGTGTGTATGTGTATATATATGTATAGCTTGGAAGATTGCTAAAAGCAATTTCTGGTGAAAGGAAGGGTACAATGACAGAGAGAATAGGGTGCAGGAGAATCTAACTCCCAAACTTAGCAATGCTTAGGTACCTTTCTTAATTACTTCTCTCTTCTTACACTCTTTCTCTCATTTCCCACTCATATACTATTTTATCTTCTTATTTCTTTTCTTATTATCCTTTTATATATAAATTTCCATATTTAATCACACATTTTTGCAGTTAACCCCTCCTTGTTCTATCTCTCATAGTCGACTCCATTTGCTCTTTCTCACTCTCAACCACTCCCACTACTCACTCTCGTTTTTTGAGAAAACCCAAATCATAAAAACCAAAAGACATTCAATATTCCTTTTCAATAATCTTTTCTTGATTTCCATTTTCATCTCAAGTTTTTTAAAAACCCACCAAGTTTTTTTTTTCGCATGGATGAGGAGATCATAACTAATCTCTGCTAGCCTCTTCTTAGGTTTTCAGAAAGTTTCGTAATTATGGGTTTCGAGAGAACATCATCATCATTATCATTATTATCATCATCATTACCATCATCATTACAACCATCAGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATTTATTGCTACTCTTCTTCGTCCTCTGTGTCATTGCCACCTTCACTATAACTCCCACTTCGACTTCTTCTCCATATAATAGGAATTCTAACTCTGGGACACTAGGGAACTTCTATGCAAAGGAGGAAGGCAAGAGTACCGTAGTGATAAAGAAGACTAGGAAGATCGGTGACCGGAGCAAGGAGGCAGAGCTACGGAGGATTCTAAGGGGATTGGGCTCATCTCCACCACGGTGCTCCTCCAAGTGTGGAAGATGCACTCCGTGCAAGCCTGTTCACGTTCCGGTGCCTCCCGGCACGCCTGTCACCGCCGAATACTACCCGGAAGCTTGGAGATGCAAGTGCGGCAACAAGTTGTACATGCCATGATCTTTTATAATATATATACTCACATATATACATTATATATATGAATTATATGCATGTTCGTAGTTATATCTTGCCTCTACTCCAAATATTTATTATACATTGACATGTTGCTAGGACAACCTCAACGTGAAACTTTTGCTGATAAATTGATTGATGATGCTCGTATAGACGATATGACGTTCTTAGCATATGATTTCGTATATGGTGACATAATTCATGAATAATATC - >AT2G30370.3
CAATAATAATAAACTAAGTGAAACCCTAATCTTGAGTACTTATGATATGTTAAACCCTACACACATGCATATGAAAGAACTTAATCAAGAAATATAACTACATATAAAATATACAATAGATAAACATATGAGTGTGTATGTGTATATATATGTATAGCTTGGAAGATTGCTAAAAGCAATTTCTGGTGAAAGGAAGGGTACAATGACAGAGAGAATAGGGTGCAGGAGAATCTAACTCCCAAACTTAGCAATGCTTAGGTACCTTTCTTAATTACTTCTCTCTTCTTACACTCTTTCTCTCATTTCCCACTCATATACTATTTTATCTTCTTATTTCTTTTCTTATTATCCTTTTATATATAAATTTCCATATTTAATCACACATTTTTGCAGTTAACCCCTCCTTGTTCTATCTCTCATAGTCGACTCCATTTGCTCTTTCTCACTCTCAACCACTCCCACTACTCACTCTCGTTTTTTGAGAAAACCCAAATCATAAAAACCAAAAGACATTCAATATTCCTTTTCAATAATCTTTTCTTGATTTCCATTTTCATCTCAAGTTTTTTAAAAACCCACCAAGTTTTTTTTTTCGCATGGATGAGGAGATCATAACTAATCTCTGCTAGCCTCTTCTTAGGTTTTCAGAAAGTTTCGTAATTATGGGTTTCGAGAGAACATCATCATCATTATCATTATTATCATCATCATTACCATCATCATTACAACCATCAGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATTTATTGCTACTCTTCTTCGTCCTCTGTGTCATTGCCACCTTCACTATAACTCCCACTTCGACTTCTTCTCCATATAATAGGAATTCTAACTCTGGGACACTAGGGAACTTCTATGCAAAGGAGGAAGGCAAGAGTACCGTAGTGATAAAGAAGACTAGGAAGATCGGTGACCGGAGCAAGGAGGCAGAGCTACGGAGGATTCTAAGGGGATTGGGCTCATCTCCACCACGGTGCTCCTCCAAGTGTGGAAGATGCACTCCGTGCAAGCCTGTTCACGTTCCGGTGCCTCCCGGCACGCCTGTCACCGCCGAATACTACCCGGAAGCTTGGAGATGCAAGTGCGGCAACAAGTTGTACATGCCATGATCTTTTATAATATATATACTCACATATATACATTATATATATGAATTATATGCATGTTCGTAGTTATATCTTGCCTCTACTCCAAATATTTATTATACATTGACATGTTGCTAGGACAACCTCAACGTGAAACTTTTGCTGATAAATTGATTGATGATGCTCGTATAGACGATATGACGTTCTTAGCATATGATTTCGTATATGGTGACATAATTCATGAATAATATC
CDS Sequence
- >AT2G30370.2
ATGGGTTTCGAGAGAACATCATCATCATTATCATTATTATCATCATCATTACCATCATCATTACAACCATCAGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATTTATTGCTACTCTTCTTCGTCCTCTGTGTCATTGCCACCTTCACTATAACTCCCACTTCGACTTCTTCTCCATATAATAGGAATTCTAACTCTGGGACACTAGGGAACTTCTATGCAAAGGAGGAAGGCAAGAGTACCGTAGTGATAAAGAAGACTAGGAAGATCGGTGACCGGAGCAAGGAGGCAGAGCTACGGAGGATTCTAAGGGGATTGGGCTCATCTCCACCACGGTGCTCCTCCAAGTGTGGAAGATGCACTCCGTGCAAGCCTGTTCACGTTCCGGTGCCTCCCGGCACGCCTGTCACCGCCGAATACTACCCGGAAGCTTGGAGATGCAAGTGCGGCAACAAGTTGTACATGCCATGA - >AT2G30370.1
ATGGGTTTCGAGAGAACATCATCATCATTATCATTATTATCATCATCATTACCATCATCATTACAACCATCAGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATTTATTGCTACTCTTCTTCGTCCTCTGTGTCATTGCCACCTTCACTATAACTCCCACTTCGACTTCTTCTCCATATAATAGGAATTCTAACTCTGGGACACTAGGGAACTTCTATGCAAAGGAGGAAGGCAAGAGTACCGTAGTGATAAAGAAGACTAGGAAGATCGGTGACCGGAGCAAGGAGGCAGAGCTACGGAGGATTCTAAGGGGATTGGGCTCATCTCCACCACGGTGCTCCTCCAAGTGTGGAAGATGCACTCCGTGCAAGCCTGTTCACGTTCCGGTGCCTCCCGGCACGCCTGTCACCGCCGAATACTACCCGGAAGCTTGGAGATGCAAGTGCGGCAACAAGTTGTACATGCCATGA - >AT2G30370.3
ATGGGTTTCGAGAGAACATCATCATCATTATCATTATTATCATCATCATTACCATCATCATTACAACCATCAGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATTTATTGCTACTCTTCTTCGTCCTCTGTGTCATTGCCACCTTCACTATAACTCCCACTTCGACTTCTTCTCCATATAATAGGAATTCTAACTCTGGGACACTAGGGAACTTCTATGCAAAGGAGGAAGGCAAGAGTACCGTAGTGATAAAGAAGACTAGGAAGATCGGTGACCGGAGCAAGGAGGCAGAGCTACGGAGGATTCTAAGGGGATTGGGCTCATCTCCACCACGGTGCTCCTCCAAGTGTGGAAGATGCACTCCGTGCAAGCCTGTTCACGTTCCGGTGCCTCCCGGCACGCCTGTCACCGCCGAATACTACCCGGAAGCTTGGAGATGCAAGTGCGGCAACAAGTTGTACATGCCATGA
Protein Sequence
- >AT2G30370.2
MGFERTSSSLSLLSSSLPSSLQPSENTRAKFSLFYLLLLFFVLCVIATFTITPTSTSSPYNRNSNSGTLGNFYAKEEGKSTVVIKKTRKIGDRSKEAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP - >AT2G30370.1
MGFERTSSSLSLLSSSLPSSLQPSENTRAKFSLFYLLLLFFVLCVIATFTITPTSTSSPYNRNSNSGTLGNFYAKEEGKSTVVIKKTRKIGDRSKEAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP - >AT2G30370.3
MGFERTSSSLSLLSSSLPSSLQPSENTRAKFSLFYLLLLFFVLCVIATFTITPTSTSSPYNRNSNSGTLGNFYAKEEGKSTVVIKKTRKIGDRSKEAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP