Gene Details:

• Gene ID: AT2G29960
• Gene Symbol: ATCYP5, CYP19-4, CYP5
• Gene Name: ARABIDOPSIS THALIANA CYCLOPHILIN 5, CYCLOPHILIN 19-4, cyclophilin 5
• Description: cyclophilin 5;(source:Araport11)
• TAIR Accession: locus:2045663
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT2G29960.1     AT2G29960.2     AT2G29960.3

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)

Gene Ontology:

• GO:0009507  — located in — chloroplast
• GO:0005783  — located in — endoplasmic reticulum
• GO:0003755  — enables — peptidyl-prolyl cis-trans isomerase activity
• GO:0043231  — is active in — intracellular membrane-bounded organelle
• GO:0005515  — enables — protein binding
• GO:0099503  — located in — secretory vesicle
• GO:0016020  — located in — membrane
• GO:0006457  — involved in — protein folding
• GO:0005829  — located in — cytosol
• GO:0016018  — enables — cyclosporin A binding
• GO:0005777  — located in — peroxisome
• GO:0005771  — located in — multivesicular body
• GO:0061083  — involved in — regulation of protein refolding
• GO:0005737  — is active in — cytoplasm
• GO:0005795  — located in — Golgi stack

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen

Literature:

• A conserved domain of the arabidopsis GNOM protein mediates subunit interaction and cyclophilin 5 binding.   DOI:  10.1105/tpc.12.3.343 ;  PMID:  10715321
• Expression of a gene for cyclophilin which contains an amino-terminal endoplasmic reticulum-targeting signal.   DOI:  10.1093/oxfordjournals.pcp.a029477 ;  PMID:  10189705
• Full-length messenger RNA sequences greatly improve genome annotation.   DOI:  10.1186/gb-2002-3-6-research0029 ;  PMID:  12093376
• Rapid identification of Arabidopsis insertion mutants by non-radioactive detection of T-DNA tagged genes.   DOI:  10.1046/j.1365-313x.2002.01416.x ;  PMID:  12383089
• Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors.   DOI:  10.1046/j.1365-313x.2003.01960.x ;  PMID:  14690510
• The Arabidopsis cyclophilin gene family.   DOI:  10.1104/pp.103.022160 ;  PMID:  15051864
• Immunophilins and parvulins. Superfamily of peptidyl prolyl isomerases in Arabidopsis.   DOI:  10.1104/pp.103.031005 ;  PMID:  15047905
• A cluster of Arabidopsis genes with a coordinate response to an environmental stimulus.   DOI:  10.1016/j.cub.2004.04.045 ;  PMID:  15186749
• Complex organization and evolution of the tomato pericentromeric region at the FER gene locus.   DOI:  10.1104/pp.104.058099 ;  PMID:  16009996
• Arabidopsis thaliana MTP1 is a Zn transporter in the vacuolar membrane which mediates Zn detoxification and drives leaf Zn accumulation.   DOI:  10.1016/j.febslet.2005.06.046 ;  PMID:  16038907
• Microarray analysis reveals vegetative molecular phenotypes of Arabidopsis flowering-time mutants.   DOI:  10.1093/pcp/pci128 ;  PMID:  15908439
• The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis.   DOI:  10.1111/j.1365-313X.2005.02488.x ;  PMID:  16115070
• Seed dormancy and ABA metabolism in Arabidopsis and barley: the role of ABA 8'-hydroxylase.   DOI:  10.1111/j.1365-313X.2006.02659.x ;  PMID:  16507085
• Mapping the Arabidopsis organelle proteome.   DOI:  10.1073/pnas.0506958103 ;  PMID:  16618929
• Desensitization of GSTF8 induction by a prior chemical treatment is long lasting and operates in a tissue-dependent manner.   DOI:  10.1104/pp.106.079509 ;  PMID:  16829588
• Systemic and intracellular responses to photooxidative stress in Arabidopsis.   DOI:  10.1105/tpc.106.045898 ;  PMID:  18156220
• Membrane association of the Arabidopsis ARF exchange factor GNOM involves interaction of conserved domains.   DOI:  10.1105/tpc.107.056515 ;  PMID:  18203920
• Localization of sucrose synthase in developing seed and siliques of Arabidopsis thaliana reveals diverse roles for SUS during development.   DOI:  10.1093/jxb/ern180 ;  PMID:  18635527
• Novel proteins, putative membrane transporters, and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes.   DOI:  10.1104/pp.108.129999 ;  PMID:  18931141
• Mapping the Arabidopsis organelle proteome.   DOI:  10.1073/pnas.0506958103 ;  PMID:  16618929
• Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.   DOI:  10.1016/j.jprot.2017.06.004 ;  PMID:  28627464

Sequences: