Information report for AT2G29550
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
- root , vascular leaf , flower , shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , pollen tube cell , pollen
Literature and News
- The small genome of Arabidopsis contains at least nine expressed beta-tubulin genes. DOI: 10.1105/tpc.4.5.549 ; PMID: 1498609
- Alteration of [beta]-Tubulin Gene Expression during Low-Temperature Exposure in Leaves of Arabidopsis thaliana. DOI: 10.1104/pp.103.2.371 ; PMID: 12231943
- Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. DOI: 10.1002/pmic.200300607 ; PMID: 14760709
- Silencing of the mitogen-activated protein kinase MPK6 compromises disease resistance in Arabidopsis. DOI: 10.1105/tpc.015552 ; PMID: 15020743
- Isolation, sequence analysis, and expression studies of florally expressed cDNAs in Arabidopsis. DOI: 10.1023/B:PLAN.0000019063.18097.62 ; PMID: 15010618
- Identification of Arabidopsis salt and osmotic stress responsive proteins using two-dimensional difference gel electrophoresis and mass spectrometry. DOI: 10.1002/pmic.200401282 ; PMID: 16254930
- The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses. DOI: 10.1002/pmic.200500543 ; PMID: 16502469
- Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis. DOI: 10.1104/pp.106.082289 ; PMID: 16920880
- The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth. DOI: 10.1105/tpc.106.041319 ; PMID: 17329565
- Elucidating the germination transcriptional program using small molecules. DOI: 10.1104/pp.107.110841 ; PMID: 18359847
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression. DOI: 10.1104/pp.109.152413 ; PMID: 20118269
- and Autophosphorylation of Tyrosine Residues. DOI: 10.1074/jbc.M114.617274 ; PMID: 25969537
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Microtubule Dynamics Plays a Vital Role in Plant Adaptation and Tolerance to Salt Stress. DOI: 10.3390/ijms22115957 ; PMID: 34073070
- Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. DOI: 10.1002/pmic.200300607 ; PMID: 14760709
- Arabidopsis cell wall proteome defined using multidimensional protein identification technology. DOI: 10.1002/pmic.200500046 ; PMID: 16287169
- The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses. DOI: 10.1002/pmic.200500543 ; PMID: 16502469
- Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. DOI: 10.1074/mcp.M600429-MCP200 ; PMID: 17317660
- Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots. DOI: 10.1093/jxb/erm207 ; PMID: 17916636
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178VS27
- EMBL: CACRSJ010000105, CACSHJ010000088, LR881467
- AlphaFoldDB: A0A178VS27
- EnsemblPlants: AT2G29550.1
- Gramene: AT2G29550.1
- KEGG: ath:AT2G29550
- Orthologous matrix: FWEVVNL
- ExpressionAtlas: AT2G29550
- InterPro: IPR000217, IPR002453, IPR003008
- PANTHER: PTHR11588
- SUPFAM: SSF52490, SSF55307
- PROSITE: PS00227, PS00228
- Gene3D: 1.10.287.600, 3.30.1330.20, 3.40.50.1440
- OrthoDB: A0A178VS27
- SWISS-MODEL: A0A178VS27
- Conserved Domain Database: cd02187
Sequences
cDNA Sequence
- >AT2G29550.1
CTCCTCTTCTTCTCTCTCTCATAAAACAAAAGATCCTCTCTGCTTCTCCTTTCCCTTTTTCAAAATCTCTCTCTCTCTCTCTCTTTTTAGATCCAGTTTTAGGGTTTTCTTCTCTGTGAGCGAAGATGCGTGAGATTCTTCATATTCAAGGAGGTCAATGCGGAAACCAAATCGGTTCCAAGTTTTGGGAAGTGGTTAATCTCGAGCACGGGATTGATCAGACGGGACGGTATGTAGGAGATTCCGAGTTACAGCTTGAGAGGGTTAATGTATACTACAACGAGGCGAGTTGTGGAAGGTACGTTCCTCGCGCTGTTCTCATGGATTTGGAGCCTGGAACCATGGACAGTGTCAGATCTGGTCCGTACGGTCAGATCTTTCGACCGGATAACTTCGTCTTCGGTCAGTCCGGTGCTGGGAATAACTGGGCTAAAGGTCACTACACTGAAGGTGCTGAGCTTATTGATTCGGTCCTTGATGTTGTTCGCAAAGAGGCTGAGAACTGTGACTGCCTTCAAGGATTTCAGGTGTGCCATTCCTTGGGAGGAGGAACTGGTTCTGGAATGGGAACTTTGTTGATATCTAAGATCAGGGAGGAGTACCCAGACCGTATGATGATGACTTTCTCTGTGTTCCCATCGCCTAAGGTGTCTGACACTGTTGTGGAGCCTTACAACGCAACACTATCTGTGCACCAGCTTGTTGAGAACGCTGATGAGTGTATGGTTCTTGACAACGAAGCTTTGTATGACATTTGCTTCCGTACACTCAAGCTTAGCACTCCAAGTTTTGGTGATCTGAACCACTTGATCTCTGCAACCATGTCTGGTGTAACCTGCTGTCTTAGGTTCCCTGGTCAACTGAACTCTGATCTGCGAAAGCTAGCTGTGAATCTGATCCCATTCCCTCGTCTCCACTTCTTCATGGTGGGATTTGCTCCTCTCACCTCTCGTGGATCTCAGCAGTACCGTAACCTCACTGTCCCAGAGCTCACTCAGCAAATGTGGGATGCTAAGAACATGATGTGTGCTGCTGACCCAAGACACGGTCGCTACCTCACTGCTTCAGCCATGTTCCGTGGAAAGATGAGCACCAAGGAGGTCGATGAACAGATGCTGAACGTACAGAACAAGAACTCCTCCTACTTTGTGGAATGGATCCCTAACAACGTCAAATCAACCGTCTGTGACATTCCCCCTACTGGTCTGAAGATGGCTTCAACGTTCATTGGTAACTCAACTTCGATCCAAGAGATGTTCAGGCGTGTCAGTGAGCAATTCACTGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGTACACAGGTGAAGGTATGGATGAGATGGAGTTCACTGAAGCTGAAAGCAACATGAACGATCTTGTCTCTGAGTATCAGCAGTATCAAGATGCAACGGCTGATGAAGAAGGAGAATATGAAGAGGAAGAAGCTGAGTACGAGCAAGAAGAAACTTATTGAAGAAACAGATGATAAGAACACCTCAACTTCCAGTTGCTGTTTACTTTTAAAACTCTCTTCTATTAAGTTCTTATAGTTTCTGTAACTATCGCTTGCGTTATTAGTAGTTATGATACTCTGCGTAGGCTAAGAGGATTTATCAATCAATATTCAAACAATCTATTTTGCTAAATCAAAATCCATCCATAGTATTTTTTTTCTTTGTTTCATTATATAACCTTTTGTTAATTTTGACTATGTGAATTCGGTGAAGACTTCACCATCTTTCAAATATAAGAAGCAGAGTAGTAGTGACAATGGTTATAAGCAATATAAGAATCTTCTTGGTTAAATTTTGGTGT
CDS Sequence
- >AT2G29550.1
ATGCGTGAGATTCTTCATATTCAAGGAGGTCAATGCGGAAACCAAATCGGTTCCAAGTTTTGGGAAGTGGTTAATCTCGAGCACGGGATTGATCAGACGGGACGGTATGTAGGAGATTCCGAGTTACAGCTTGAGAGGGTTAATGTATACTACAACGAGGCGAGTTGTGGAAGGTACGTTCCTCGCGCTGTTCTCATGGATTTGGAGCCTGGAACCATGGACAGTGTCAGATCTGGTCCGTACGGTCAGATCTTTCGACCGGATAACTTCGTCTTCGGTCAGTCCGGTGCTGGGAATAACTGGGCTAAAGGTCACTACACTGAAGGTGCTGAGCTTATTGATTCGGTCCTTGATGTTGTTCGCAAAGAGGCTGAGAACTGTGACTGCCTTCAAGGATTTCAGGTGTGCCATTCCTTGGGAGGAGGAACTGGTTCTGGAATGGGAACTTTGTTGATATCTAAGATCAGGGAGGAGTACCCAGACCGTATGATGATGACTTTCTCTGTGTTCCCATCGCCTAAGGTGTCTGACACTGTTGTGGAGCCTTACAACGCAACACTATCTGTGCACCAGCTTGTTGAGAACGCTGATGAGTGTATGGTTCTTGACAACGAAGCTTTGTATGACATTTGCTTCCGTACACTCAAGCTTAGCACTCCAAGTTTTGGTGATCTGAACCACTTGATCTCTGCAACCATGTCTGGTGTAACCTGCTGTCTTAGGTTCCCTGGTCAACTGAACTCTGATCTGCGAAAGCTAGCTGTGAATCTGATCCCATTCCCTCGTCTCCACTTCTTCATGGTGGGATTTGCTCCTCTCACCTCTCGTGGATCTCAGCAGTACCGTAACCTCACTGTCCCAGAGCTCACTCAGCAAATGTGGGATGCTAAGAACATGATGTGTGCTGCTGACCCAAGACACGGTCGCTACCTCACTGCTTCAGCCATGTTCCGTGGAAAGATGAGCACCAAGGAGGTCGATGAACAGATGCTGAACGTACAGAACAAGAACTCCTCCTACTTTGTGGAATGGATCCCTAACAACGTCAAATCAACCGTCTGTGACATTCCCCCTACTGGTCTGAAGATGGCTTCAACGTTCATTGGTAACTCAACTTCGATCCAAGAGATGTTCAGGCGTGTCAGTGAGCAATTCACTGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGTACACAGGTGAAGGTATGGATGAGATGGAGTTCACTGAAGCTGAAAGCAACATGAACGATCTTGTCTCTGAGTATCAGCAGTATCAAGATGCAACGGCTGATGAAGAAGGAGAATATGAAGAGGAAGAAGCTGAGTACGAGCAAGAAGAAACTTATTGA
Protein Sequence
- >AT2G29550.1
MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEEEEAEYEQEETY