Information report for AT2G28390
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- GO:0005768 — located in — endosome
- GO:0099402 — involved in — plant organ development
- GO:0005634 — located in — nucleus
- GO:0005515 — enables — protein binding
- GO:0045324 — involved in — late endosome to vacuole transport
- GO:0006886 — involved in — intracellular protein transport
- GO:0006623 — involved in — protein targeting to vacuole
- GO:0007033 — involved in — vacuole organization
Functional Keywords
Literature and News
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. DOI: 10.1104/pp.105.063743 ; PMID: 16166256
- Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism. DOI: 10.1104/pp.106.090167 ; PMID: 17085508
- Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis. DOI: 10.1105/tpc.106.047415 ; PMID: 17194763
- Ethylene is one of the key elements for cell death and defense response control in the Arabidopsis lesion mimic mutant vad1. DOI: 10.1104/pp.107.106302 ; PMID: 17720753
- Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection. DOI: 10.1186/1471-2164-8-344 ; PMID: 17908303
- Genetic analysis reveals that C19-GA 2-oxidation is a major gibberellin inactivation pathway in Arabidopsis. DOI: 10.1105/tpc.108.058818 ; PMID: 18805991
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- SRFR1, a suppressor of effector-triggered immunity, encodes a conserved tetratricopeptide repeat protein with similarity to transcriptional repressors. DOI: 10.1111/j.1365-313X.2008.03669.x ; PMID: 18774967
- Identification and testing of superior reference genes for a starting pool of transcript normalization in Arabidopsis. DOI: 10.1093/pcp/pcq128 ; PMID: 20798276
- DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus. DOI: 10.1186/1471-2229-12-157 ; PMID: 22937923
- Activation of the Rab7 GTPase by the MON1-CCZ1 Complex Is Essential for PVC-to-Vacuole Trafficking and Plant Growth in Arabidopsis. DOI: 10.1105/tpc.114.123141 ; PMID: 24824487
- The EF-Hand Ca2+ Binding Protein MICU Choreographs Mitochondrial Ca2+ Dynamics in Arabidopsis. DOI: 10.1105/tpc.15.00509 ; PMID: 26530087
- MONENSIN SENSITIVITY1 (MON1)/CALCIUM CAFFEINE ZINC SENSITIVITY1 (CCZ1)-Mediated Rab7 Activation Regulates Tapetal Programmed Cell Death and Pollen Development. DOI: 10.1104/pp.16.00988 ; PMID: 27799422
- Arabidopsis ATRX Modulates H3.3 Occupancy and Fine-Tunes Gene Expression. DOI: 10.1105/tpc.16.00877 ; PMID: 28684426
- Tonoplast-localized nitrate uptake transporters involved in vacuolar nitrate efflux and reallocation in Arabidopsis. DOI: 10.1038/s41598-017-06744-5 ; PMID: 28743909
- Interaction between VPS35 and RABG3f is necessary as a checkpoint to control fusion of late compartments with the vacuole. DOI: 10.1073/pnas.1905321116 ; PMID: 31570580
- Arabidopsis Lectin Receptor Kinase P2K2 Is a Second Plant Receptor for Extracellular ATP and Contributes to Innate Immunity. DOI: 10.1104/pp.19.01265 ; PMID: 32345768
- Identification and characterization of unconventional membrane protein trafficking regulators in Arabidopsis: A genetic approach. DOI: 10.1016/j.jplph.2020.153229 ; PMID: 32750645
- The MIK2/SCOOP Signaling System Contributes to Arabidopsis Resistance Against Herbivory by Modulating Jasmonate and Indole Glucosinolate Biosynthesis. DOI: 10.3389/fpls.2022.852808 ; PMID: 35401621
- MCU proteins dominate in vivo mitochondrial Ca2+ uptake in Arabidopsis roots. DOI: 10.1093/plcell/koac242 ; PMID: 35938694
- Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations. DOI: 10.1007/s00425-008-0706-4 ; PMID: 18273637
Gene Resources
Homologs
- Lactuca sativa Lsat_1_v5_gn_8_29480
Sequences
cDNA Sequence
- >AT2G28390.1
CCATCGGCTTCCACTATTCGGCAGAAAATAAGCCCAAGCCCCATATTAAGTAGCCCCTCTCTCTTTTCAATTATATCCTATTGGGGGAAAAGCCCAACAATATGGGTCGCAAAGCGGGTCAAATATATCCGACTGAAATCTGGATCCGTTGGTGAATCGTGAATCATCCTCTTCCTCAATGCGAGTGGACAAAGTGATCTAGCAGAGAGAATCAATGAACACGTCTTGCCATTAGAGGAGACCAACCATTTCTCTCCTCTCTCTTGAAAAATCTATAACCGATTTCTGCAATGGCGACTTCAGATTCGAGGTCTTCTCCTTCATCATCCGACACCGAATTCGCCGATCCAAATCCTAGCTCCGATCCAGAGACGAATTCGGAGCGTGTTCAAAGTCAATTAGAGTCAATGAATTTATCTCAACCTAGCGAAGTCTCTGATGGTAGCCACACCGAATTTAGCGGTGGCGGCGATGATAATGATGATGAGGTTGCATCGGCTAACGGGAACGAAGGCGGAGTTAGCAATGGAGGTTTATTGCGTGAAGGTGTGGCGGGAACTAGCGGAGGAGAGGTTTTGTTAAGGGCGGAAAATCCGGTGGAAATGGAAGCAGGTGAAGAACCACCGAGTCCGACTAGTAGCGGTTACGATGGAGAGAGAGGAAGTAGCGGCGGAGCTACTTCTACTTATAAAGCTGATGATGGAAGCGAGGATGAGATTAGGGAAGCTAATGTGGATGGTGACACTGCCTCGCAGCATGAAGCTGCGTGGTTGCCTGGAAAACGCCATGTTGATGAGGATGATGCTTCTACGTCATGGAGAAAGAGGAAGAAGCATTTCTTCATACTGAGTAACTCAGGCAAACCGATATATTCCAGATATGGAGATGAACATAAGCTTGCTGGATTTTCAGCTACTCTTCAAGCTATTATTTCTTTTGTGGAGAATGGTGGTGACCGTGTCAACTTAGTCAAGGCAGGAAATCACCAGGTTGTCTTTCTCGTTAAGGGGCCAATATATCTGGTCTGCATCAGCTGTACAGATGAAACATATGAGTATTTAAGGGGGCAGTTGGATCTTCTATATGGTCAGATGATACTAATTTTAACAAAATCAATAGACAGATGTTTTGAAAAGAATGCAAAGTTCGATATGACACCCTTGCTTGGAGGGACAGATGCTGTCTTCTCATCTCTTGTCCATTCATTTAGCTGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTTCCCCTTCCATATGCGTTAAGGCAAGCTACAGGAACCATATTGCAAGAAGTTTGCGCGTCTGGTGTCTTATTCTCACTACTAATGTGCAGACACAAGGTTGTCAGTCTTGCTGGTGCACAGAAAGCGTCTCTCCATCCCGATGACTTGCTTCTACTCTCAAATTTTGTCATGTCATCAGAATCATTCAGGACATCAGAATCTTTCTCACCAATCTGCCTACCAAGATACAACGCTCAGGCCTTTTTGCATGCCTATGTCCACTTCTTTGATGATGATACATATGTAATATTGCTTACCACACGTTCAGATGCGTTCCATCATCTCAAAGATTGCAGGGTACGCCTTGAGGCTGTTCTTCTCAAGTCAAATATTCTAAGTGTGGTTCAAAGATCAATCGCGGAAGGTGGAATGCGTGTTGAAGATGTACCAATAGACCGCAGGCGTCGATCATCTACTACTAATCAAGAACAAGACTCACCTGGTCCCGACATATCTGTGGGAACCGGAGGTCCCTTTGGACTTTGGCATTTCATGTACCGTAGTATATACTTAGATCAATACATTTCCTCGGAATTCTCACCCCCAGTAACTAGTCACAGACAACAGAAAAGTCTATATCGAGCATACCAGAAACTTTATGCTTCAATGCATGTAAAAGGATTGGGACCCCACAAGACTCAATATAGAAGAGATGAAAACTACACTCTTCTATGTTGGGTCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAGACAAGGCGATGGCGATAAAGATATGCAATCAGGTGTGCCAAAGGGTAAAAGATGTGGAGAATGAAGTGTTCTTGCAAGGAGCTAGTCCTTTCTCTTGGTGATAATATTTTACTATTCACTCTTTAATATATATGTATTTTTTTTTAATCTTTCTACTGGTTTGACCCCCTATATTGTGCTAGTACCACCCACCTTAATAAGGCAATAATGTAATTGTACCCAGAAACCCTTGAGAGAAAGCTATTTCATTGCCTTTATTGTTATTAATTAGCTTGAATAGTCAAAATTGAGATGATGTAGACAAAAATTGAAACTATTTGAAAAGTGAGCAATAATATTAAGGTTTTGATGGAAGGATG
CDS Sequence
- >AT2G28390.1
ATGGCGACTTCAGATTCGAGGTCTTCTCCTTCATCATCCGACACCGAATTCGCCGATCCAAATCCTAGCTCCGATCCAGAGACGAATTCGGAGCGTGTTCAAAGTCAATTAGAGTCAATGAATTTATCTCAACCTAGCGAAGTCTCTGATGGTAGCCACACCGAATTTAGCGGTGGCGGCGATGATAATGATGATGAGGTTGCATCGGCTAACGGGAACGAAGGCGGAGTTAGCAATGGAGGTTTATTGCGTGAAGGTGTGGCGGGAACTAGCGGAGGAGAGGTTTTGTTAAGGGCGGAAAATCCGGTGGAAATGGAAGCAGGTGAAGAACCACCGAGTCCGACTAGTAGCGGTTACGATGGAGAGAGAGGAAGTAGCGGCGGAGCTACTTCTACTTATAAAGCTGATGATGGAAGCGAGGATGAGATTAGGGAAGCTAATGTGGATGGTGACACTGCCTCGCAGCATGAAGCTGCGTGGTTGCCTGGAAAACGCCATGTTGATGAGGATGATGCTTCTACGTCATGGAGAAAGAGGAAGAAGCATTTCTTCATACTGAGTAACTCAGGCAAACCGATATATTCCAGATATGGAGATGAACATAAGCTTGCTGGATTTTCAGCTACTCTTCAAGCTATTATTTCTTTTGTGGAGAATGGTGGTGACCGTGTCAACTTAGTCAAGGCAGGAAATCACCAGGTTGTCTTTCTCGTTAAGGGGCCAATATATCTGGTCTGCATCAGCTGTACAGATGAAACATATGAGTATTTAAGGGGGCAGTTGGATCTTCTATATGGTCAGATGATACTAATTTTAACAAAATCAATAGACAGATGTTTTGAAAAGAATGCAAAGTTCGATATGACACCCTTGCTTGGAGGGACAGATGCTGTCTTCTCATCTCTTGTCCATTCATTTAGCTGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTTCCCCTTCCATATGCGTTAAGGCAAGCTACAGGAACCATATTGCAAGAAGTTTGCGCGTCTGGTGTCTTATTCTCACTACTAATGTGCAGACACAAGGTTGTCAGTCTTGCTGGTGCACAGAAAGCGTCTCTCCATCCCGATGACTTGCTTCTACTCTCAAATTTTGTCATGTCATCAGAATCATTCAGGACATCAGAATCTTTCTCACCAATCTGCCTACCAAGATACAACGCTCAGGCCTTTTTGCATGCCTATGTCCACTTCTTTGATGATGATACATATGTAATATTGCTTACCACACGTTCAGATGCGTTCCATCATCTCAAAGATTGCAGGGTACGCCTTGAGGCTGTTCTTCTCAAGTCAAATATTCTAAGTGTGGTTCAAAGATCAATCGCGGAAGGTGGAATGCGTGTTGAAGATGTACCAATAGACCGCAGGCGTCGATCATCTACTACTAATCAAGAACAAGACTCACCTGGTCCCGACATATCTGTGGGAACCGGAGGTCCCTTTGGACTTTGGCATTTCATGTACCGTAGTATATACTTAGATCAATACATTTCCTCGGAATTCTCACCCCCAGTAACTAGTCACAGACAACAGAAAAGTCTATATCGAGCATACCAGAAACTTTATGCTTCAATGCATGTAAAAGGATTGGGACCCCACAAGACTCAATATAGAAGAGATGAAAACTACACTCTTCTATGTTGGGTCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAGACAAGGCGATGGCGATAAAGATATGCAATCAGGTGTGCCAAAGGGTAAAAGATGTGGAGAATGAAGTGTTCTTGCAAGGAGCTAGTCCTTTCTCTTGGTGA
Protein Sequence
- >AT2G28390.1
MATSDSRSSPSSSDTEFADPNPSSDPETNSERVQSQLESMNLSQPSEVSDGSHTEFSGGGDDNDDEVASANGNEGGVSNGGLLREGVAGTSGGEVLLRAENPVEMEAGEEPPSPTSSGYDGERGSSGGATSTYKADDGSEDEIREANVDGDTASQHEAAWLPGKRHVDEDDASTSWRKRKKHFFILSNSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDRVNLVKAGNHQVVFLVKGPIYLVCISCTDETYEYLRGQLDLLYGQMILILTKSIDRCFEKNAKFDMTPLLGGTDAVFSSLVHSFSWNPATFLHAYTCLPLPYALRQATGTILQEVCASGVLFSLLMCRHKVVSLAGAQKASLHPDDLLLLSNFVMSSESFRTSESFSPICLPRYNAQAFLHAYVHFFDDDTYVILLTTRSDAFHHLKDCRVRLEAVLLKSNILSVVQRSIAEGGMRVEDVPIDRRRRSSTTNQEQDSPGPDISVGTGGPFGLWHFMYRSIYLDQYISSEFSPPVTSHRQQKSLYRAYQKLYASMHVKGLGPHKTQYRRDENYTLLCWVTPDFELYAAFDPLADKAMAIKICNQVCQRVKDVENEVFLQGASPFSW