Information report for AT2G28190
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0005020 — vascular bundle — haz vascular (Spanish, exact), vein (exact), 維管束 (Japanese, exact)
- PO:0000014 — rosette leaf — hoja en roseta (Spanish, exact), ロゼット葉 (Japanese, exact)
- PO:0009049 — inflorescence — inflorescencia (Spanish, exact), 花序 (Japanese, exact), Triticeae spike (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , vascular bundle , rosette leaf , flower , inflorescence , plant sperm cell , pollen tube cell , pollen
Literature and News
- Superoxide dismutase in Arabidopsis: an eclectic enzyme family with disparate regulation and protein localization. DOI: 10.1104/pp.118.2.637 ; PMID: 9765550
- Arabidopsis thaliana ecotype Cvi shows an increased tolerance to photo-oxidative stress and contains a new chloroplastic copper/zinc superoxide dismutase isoenzyme. DOI: 10.1093/jexbot/52.360.1417 ; PMID: 11457901
- Two P-type ATPases are required for copper delivery in Arabidopsis thaliana chloroplasts. DOI: 10.1105/tpc.104.030452 ; PMID: 15772282
- Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. DOI: 10.1105/tpc.106.041673 ; PMID: 16861386
- Regulation of gene expression by photosynthetic signals triggered through modified CO2 availability. DOI: 10.1186/1471-2229-6-15 ; PMID: 16916444
- Regulation of peroxiredoxin expression versus expression of Halliwell-Asada-Cycle enzymes during early seedling development of Arabidopsis thaliana. DOI: 10.1007/s11120-006-9087-3 ; PMID: 16915352
- Aconitase plays a role in regulating resistance to oxidative stress and cell death in Arabidopsis and Nicotiana benthamiana. DOI: 10.1007/s11103-006-9087-x ; PMID: 17013749
- Limitation of nocturnal import of ATP into Arabidopsis chloroplasts leads to photooxidative damage. DOI: 10.1111/j.1365-313X.2007.03049.x ; PMID: 17355434
- Long-term effects of mild salt stress on growth, ion accumulation and superoxide dismutase expression of Arabidopsis rosette leaves. DOI: 10.1111/j.1399-3054.2007.01009.x ; PMID: 18275461
- Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases. DOI: 10.1007/s11103-008-9329-1 ; PMID: 18392778
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptional responses of Arabidopsis thaliana plants to As (V) stress. DOI: 10.1186/1471-2229-8-87 ; PMID: 18684332
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Quantitative trait locus mapping for seed mineral concentrations in two Arabidopsis thaliana recombinant inbred populations. DOI: 10.1111/j.1469-8137.2008.02544.x ; PMID: 18631293
- Contribution of plastocyanin isoforms to photosynthesis and copper homeostasis in Arabidopsis thaliana grown at different copper regimes. DOI: 10.1007/s00425-008-0869-z ; PMID: 19084994
- Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis. DOI: 10.1007/s00425-009-0889-3 ; PMID: 19148671
- microRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis. DOI: 10.1111/j.1365-313X.2010.04162.x ; PMID: 20128885
- New insights into miR398 functions in Arabidopsis. DOI: 10.4161/psb.5.6.11573 ; PMID: 20400846
- Comparative transcriptome analysis of green/white variegated sectors in Arabidopsis yellow variegated2: responses to oxidative and other stresses in white sectors. DOI: 10.1093/jxb/erq075 ; PMID: 20400527
- Oxidative stress-related responses at transcriptional and enzymatic levels after exposure to Cd or Cu in a multipollution context. DOI: 10.1016/j.jplph.2009.06.014 ; PMID: 19709775
- Copper chaperone-dependent and -independent activation of three copper-zinc superoxide dismutase homologs localized in different cellular compartments in Arabidopsis. DOI: 10.1104/pp.111.190223 ; PMID: 22186608
- Natural genetic variation in the expression regulation of the chloroplast antioxidant system among Arabidopsis thaliana accessions. DOI: 10.1111/j.1399-3054.2012.01602.x ; PMID: 22339086
- Heat stress induction of miR398 triggers a regulatory loop that is critical for thermotolerance in Arabidopsis. DOI: 10.1111/tpj.12169 ; PMID: 23480361
- MKK5 regulates high light-induced gene expression of Cu/Zn superoxide dismutase 1 and 2 in Arabidopsis. DOI: 10.1093/pcp/pct072 ; PMID: 23677921
- Downregulation of CSD2 by a heat-inducible miR398 is required for thermotolerance in Arabidopsis. DOI: 10.4161/psb.24952 ; PMID: 23733060
- The CTR/COPT-dependent copper uptake and SPL7-dependent copper deficiency responses are required for basal cadmium tolerance in A. thaliana. DOI: 10.1039/c3mt00111c ; PMID: 23835944
- miR408 is involved in abiotic stress responses in Arabidopsis. DOI: 10.1111/tpj.12999 ; PMID: 26312768
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Expression and characterization of the SOS1 Arabidopsis salt tolerance protein. DOI: 10.1007/s11010-016-2685-2 ; PMID: 26992907
- Natural Variation of Cold Deacclimation Correlates with Variation of Cold-Acclimation of the Plastid Antioxidant System in Arabidopsis thaliana Accessions. DOI: 10.3389/fpls.2016.00305 ; PMID: 27014325
- Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. DOI: 10.1105/tpc.17.00363 ; PMID: 29114014
- SELENOPROTEIN O is a chloroplast protein involved in ROS scavenging and its absence increases dehydration tolerance in Arabidopsis thaliana. DOI: 10.1016/j.plantsci.2018.02.023 ; PMID: 29576081
- SPL7 locally regulates copper-homeostasis-related genes in Arabidopsis. DOI: 10.1016/j.jplph.2018.03.014 ; PMID: 29635212
- Gene regulation by translational inhibition is determined by Dicer partnering proteins. DOI: 10.1038/nplants.2014.27 ; PMID: 27246880
- SQUAMOSA promoter-binding protein-like 7 mediates copper deficiency response in the presence of high nitrogen in Arabidopsis thaliana. DOI: 10.1007/s00299-019-02422-0 ; PMID: 31093688
- 24-Epibrassinolide promotes arsenic tolerance in Arabidopsis thaliana L. by altering stress responses at biochemical and molecular level. DOI: 10.1016/j.jplph.2019.05.002 ; PMID: 31121523
- GSM2, a transaldolase, contributes to reactive oxygen species homeostasis in Arabidopsis. DOI: 10.1007/s11103-020-01022-x ; PMID: 32564178
- EGY3 mediates chloroplastic ROS homeostasis and promotes retrograde signaling in response to salt stress in Arabidopsis. DOI: 10.1016/j.celrep.2021.109384 ; PMID: 34260941
- Overexpression mutants reveal a role for a chloroplast MPD protein in regulation of reactive oxygen species during chilling in Arabidopsis. DOI: 10.1093/jxb/erac029 ; PMID: 35084440
- miR398b and AtC2GnT form a negative feedback loop to regulate Arabidopsis thaliana resistance against Phytophthora parasitica. DOI: 10.1111/tpj.15792 ; PMID: 35506331
- Stress-related expression of the chloroplast EGY3 pseudoprotease and its possible impact on chloroplasts' proteome composition. DOI: 10.3389/fpls.2022.965143 ; PMID: 35937369
- Superoxide dismutase in Arabidopsis: an eclectic enzyme family with disparate regulation and protein localization. DOI: 10.1104/pp.118.2.637 ; PMID: 9765550
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- Evaluation of two-dimensional electrophoresis and liquid chromatography–tandem mass spectrometry for tissue-specific protein profiling of laser-microdissected plant samples. DOI: 10.1002/elps.200410399 ; PMID: 15971193
- High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. DOI: 10.1104/pp.106.080150 ; PMID: 16648217
- Distinct roles of the pepper hypersensitive induced reaction protein gene CaHIR1 in disease and osmotic stress, as determined by comparative transcriptome and proteome analyses. DOI: 10.1007/s00425-007-0628-6 ; PMID: 17899171
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. DOI: 10.1016/j.phytochem.2008.04.007 ; PMID: 18538804
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
- Transcriptional responses of Arabidopsis thaliana plants to As (V) stress. DOI: 10.1186/1471-2229-8-87 ; PMID: 18684332
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178VRV1
- EMBL: CACRSJ010000105, CACSHJ010000088, LUHQ01000002
- AlphaFoldDB: A0A178VRV1
- EnsemblPlants: AT2G28190.1
- Gramene: AT2G28190.1
- KEGG: ath:AT2G28190
- Orthologous matrix: IVAHEGC
- ExpressionAtlas: AT2G28190
- InterPro: IPR001424, IPR018152, IPR024134
- PANTHER: PTHR10003
- SUPFAM: SSF49329
- PROSITE: PS00087, PS00332
- Gene3D: 2.60.40.200
- OrthoDB: A0A178VRV1
- SWISS-MODEL: A0A178VRV1
- Conserved Domain Database: cd00305
Homologs
- Gossypium hirsutum Gh_A09G2473
- Oryza sativa OsCu;Zn-SOD, SodCc7;OsSOD1, OsCSD1, OsCSD3, OsCCS
- Triticum aestivum TaCZSOD2-7B, TaCZSOD2-7D, TaCZSOD2-7A, TaCSOD
Sequences
cDNA Sequence
- >AT2G28190.1
AAAAAAAAAAAAAAAAATTGTGTATGTGTGGGCCGAATTTGAGAAACCAGTGACACCAATAAAAACCTCATCTTTCAATCTCACACAAGTATTTGTGCCTACTCATTTCCTCCAAACGTCAAACATAGCAGCAGCCATGGCTGCCACCAACACAATCCTCGCATTCTCATCTCCTTCTCGTCTTCTCATTCCTCCTTCCTCCAATCCTTCAACTCTCCGTTCCTCTTTCCGCGGCGTCTCTCTCAACAACAACAATCTCCACCGTCTCCAATCTGTTTCCTTCGCCGTTAAAGCTCCGTCGAAAGCGTTGACAGTTGTTTCCGCGGCGAAGAAGGCTGTTGCAGTGCTTAAAGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGGATTTCATCTCCATGAGTTTGGTGATACAACTAATGGATGTATCTCAACAGGACCACATTTCAACCCTAACAACATGACACACGGAGCTCCAGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGGCGTGGCAGAAACAACAATAGTGGACAATCAGATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCACGAGCTTAAGGATGACCTCGGAAAGGGTGGCCATGAGCTTAGTCTGACCACTGGAAACGCAGGCGGGAGATTGGCATGTGGTGTGATTGGCTTGACGCCGCTCTAAGTCAGAGGCTAAGCAAGTACTCTTATGTCTACTGTGTTGATCTTGTCTGTTTGAACAGATGTAAGAATCTTAGCAAATAATGTTTGGCTTAATAAACTTTGATGTTTATGTTCATTGCATCAATTTTTCTCTTTTTGAATTTGTGACAGTGATGTGTTTACTTTTGATACAACTTTGTGTTTGATCGTTTAAGTACATTTTGGTTTATTTAGCATCCTTTTTATTCAGTTCAAGATTGTGATGAATCATGCGTTTGATTTCGTTTT
CDS Sequence
- >AT2G28190.1
ATGGCTGCCACCAACACAATCCTCGCATTCTCATCTCCTTCTCGTCTTCTCATTCCTCCTTCCTCCAATCCTTCAACTCTCCGTTCCTCTTTCCGCGGCGTCTCTCTCAACAACAACAATCTCCACCGTCTCCAATCTGTTTCCTTCGCCGTTAAAGCTCCGTCGAAAGCGTTGACAGTTGTTTCCGCGGCGAAGAAGGCTGTTGCAGTGCTTAAAGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGGATTTCATCTCCATGAGTTTGGTGATACAACTAATGGATGTATCTCAACAGGACCACATTTCAACCCTAACAACATGACACACGGAGCTCCAGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGGCGTGGCAGAAACAACAATAGTGGACAATCAGATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCACGAGCTTAAGGATGACCTCGGAAAGGGTGGCCATGAGCTTAGTCTGACCACTGGAAACGCAGGCGGGAGATTGGCATGTGGTGTGATTGGCTTGACGCCGCTCTAA
Protein Sequence
- >AT2G28190.1
MAATNTILAFSSPSRLLIPPSSNPSTLRSSFRGVSLNNNNLHRLQSVSFAVKAPSKALTVVSAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLTPL