Information report for AT2G28100
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
Functional Keywords
Literature and News
- AtFXG1, an Arabidopsis gene encoding alpha-L-fucosidase active against fucosylated xyloglucan oligosaccharides. DOI: 7021 ; PMID: 11788770
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Proteomic analysis of secreted proteins from Arabidopsis thaliana seedlings: improved recovery following removal of phenolic compounds. DOI: 10.1016/j.phytochem.2004.12.013 ; PMID: 15694452
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- Molecular cloning and characterization of a plant alpha1,3/4-fucosidase based on sequence tags from almond fucosidase I. DOI: 10.1016/j.phytochem.2006.01.021 ; PMID: 16516937
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Degradation pathway of plant complex-type N-glycans: identification and characterization of a key α1,3-fucosidase from glycoside hydrolase family 29. DOI: 10.1042/BCJ20170106 ; PMID: 29212795
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- Molecular cloning and characterization of a plant alpha1,3/4-fucosidase based on sequence tags from almond fucosidase I. DOI: 10.1016/j.phytochem.2006.01.021 ; PMID: 16516937
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178VQ23
- EMBL: CACSHJ010000088, LUHQ01000002
- AlphaFoldDB: A0A178VQ23
- EnsemblPlants: AT2G28100.1
- Gramene: AT2G28100.1
- KEGG: ath:AT2G28100
- Orthologous matrix: YFFDSWF
- ExpressionAtlas: AT2G28100
- InterPro: IPR000933, IPR008979, IPR017853
- PANTHER: PTHR10030, PTHR10030:SF27
- SUPFAM: SSF49785, SSF51445
- Gene3D: 2.60.120.260, 3.20.20.80
- OrthoDB: A0A178VQ23
- SWISS-MODEL: A0A178VQ23
Homologs
- Arachis hypogaea arahy.Tifrunner.gnm1.ann1.IV261E
- Saccharum spontaneum Sspon.05G0005420-2B
Sequences
cDNA Sequence
- >AT2G28100.1
AAAGTTAGAACCAAAGCAAAAAAAACTAAAAAGCTCAAGAAGAAAAGGATAGAGACGACAAAACTCCATTGAAGAACTTATTAGAGAAGAAGAACAACAACAAGGAAGATAACGAAAGTCACTAAAATCTTTCAAGACCCATGAACTCTCAAATCACTCTTTTCTTCTTCTTCTTCTCAATCCTCTCCCTCTCCCAAATCTCAAATTCATCATCACTACTAAAACCACACCCATGTCCAATTTTACCCCTCCCATCCTCCCAACAGCTCCAATGGCAACTCGGATCCATGGCCATGTTCCTCCATTTTGGACCCAACACTTTCACCGACTCCGAATGGGGCACCGGAAAAGCTAACCCATCCATTTTCAACCCGACCCATCTCAACGCAAGTCAATGGGTCCAAATCGCTAAAGACTCAGGCTTTTCCCGCGTTATCCTCACAGCTAAGCACCATGATGGATTCTGTCTCTGGCCTAGCGAATACACTGATTACTCCGTCAAATCTAGCCAATGGAGAAACGGAGCCGGCGATGTAGTGGCTGAACTAGCTTCTGCGGCAAAGGAAGCTGGAATTGGACTTGGTCTTTACCTTTCTCCATGGGATCGACATGAACAGTGTTATGGCAAGACATTGGAGTATAACGAGTTCTATCTGAGTCAAATGACCGAGTTACTAACAAAGTATGGAGAGATTAAGGAAGTTTGGTTAGATGGAGCTAAAGGAGACGGAGAGAAAGATATGGAATATTTCTTTGATACTTGGTTTAGTTTGATCCATCAGCTTCAGCCTAAAGCTGTTATATTCTCTGACGCTGGTCCTGATGTCAGGTGGATTGGTGATGAAGCTGGTCTAGCTGGCTCTACTTGCTGGTCACTCTTTAACAGAACCAATGCAAAGATTGGTGACACTGAGCCTTCGTATTCTCAAGAAGGTGATGGCTATGGGCAAGATTGGGTACCAGCGGAATGTGATGTATCGATTCGACCCGGTTGGTTTTGGCATGCGTCGGAGTCGCCTAAACCGGCTGTTCAGCTTTTGGATATATACTATAACTCAGTTGGAAGAAACTGTCTCTTCTTGCTTAATGTACCTCCTAATTCTTCAGGATTGATATCTGAGCAAGACATTAAGGTTCTTGAAGAGTTCAGCGAAATGAAGAACTCCATTTTCTCGAACAATCTCGCCCGTAAAGCATTCGTTAACTCGAGCAGTATTCGTGGCGATCAAAGTTCACAGTTTGGTCCTAAGAATGTTTTGGAAGAAGGATTAGACAAGTACTGGGCGCCAGAAGAGAATCAAAACGAATGGGTGTTATACTTAGAGTTTAAAGATTTGGTTAGCTTCAATGTGTTGGAGATTCGAGAACCAATCCATATGGGTCAAAGGATCGCATCTTTCCATCTCGAGACACGGAAGACTGGAAGCGGTGAGTGGGAGAGAGTTGTGAGCGGCACGACGGTTGGTAACAAAAGGCTTTTACGGTTTCTGAATGTTGTTGAGTCGCGGTCTCTAAAGCTTGTGGTGGACAAAGCGAGGACCGACCCACTTATATCGTACCTCGGACTCTACATGGATAAGTTTTCGGGTTCTAGTAGAAACACAACAAAGATAACAATCACAAGGACACTAAAGGAAGAGCAGCAACTACATGATTTGTAAGAAATAACTCTCAAGGATTCATCACATAAGTGTTAGGTATTCTTGAGAATATCTATGTGCATCAAGTCATATATGTGTCACTATCAATTCTTGTATGTTAAGGCTCTAACT
CDS Sequence
- >AT2G28100.1
ATGAACTCTCAAATCACTCTTTTCTTCTTCTTCTTCTCAATCCTCTCCCTCTCCCAAATCTCAAATTCATCATCACTACTAAAACCACACCCATGTCCAATTTTACCCCTCCCATCCTCCCAACAGCTCCAATGGCAACTCGGATCCATGGCCATGTTCCTCCATTTTGGACCCAACACTTTCACCGACTCCGAATGGGGCACCGGAAAAGCTAACCCATCCATTTTCAACCCGACCCATCTCAACGCAAGTCAATGGGTCCAAATCGCTAAAGACTCAGGCTTTTCCCGCGTTATCCTCACAGCTAAGCACCATGATGGATTCTGTCTCTGGCCTAGCGAATACACTGATTACTCCGTCAAATCTAGCCAATGGAGAAACGGAGCCGGCGATGTAGTGGCTGAACTAGCTTCTGCGGCAAAGGAAGCTGGAATTGGACTTGGTCTTTACCTTTCTCCATGGGATCGACATGAACAGTGTTATGGCAAGACATTGGAGTATAACGAGTTCTATCTGAGTCAAATGACCGAGTTACTAACAAAGTATGGAGAGATTAAGGAAGTTTGGTTAGATGGAGCTAAAGGAGACGGAGAGAAAGATATGGAATATTTCTTTGATACTTGGTTTAGTTTGATCCATCAGCTTCAGCCTAAAGCTGTTATATTCTCTGACGCTGGTCCTGATGTCAGGTGGATTGGTGATGAAGCTGGTCTAGCTGGCTCTACTTGCTGGTCACTCTTTAACAGAACCAATGCAAAGATTGGTGACACTGAGCCTTCGTATTCTCAAGAAGGTGATGGCTATGGGCAAGATTGGGTACCAGCGGAATGTGATGTATCGATTCGACCCGGTTGGTTTTGGCATGCGTCGGAGTCGCCTAAACCGGCTGTTCAGCTTTTGGATATATACTATAACTCAGTTGGAAGAAACTGTCTCTTCTTGCTTAATGTACCTCCTAATTCTTCAGGATTGATATCTGAGCAAGACATTAAGGTTCTTGAAGAGTTCAGCGAAATGAAGAACTCCATTTTCTCGAACAATCTCGCCCGTAAAGCATTCGTTAACTCGAGCAGTATTCGTGGCGATCAAAGTTCACAGTTTGGTCCTAAGAATGTTTTGGAAGAAGGATTAGACAAGTACTGGGCGCCAGAAGAGAATCAAAACGAATGGGTGTTATACTTAGAGTTTAAAGATTTGGTTAGCTTCAATGTGTTGGAGATTCGAGAACCAATCCATATGGGTCAAAGGATCGCATCTTTCCATCTCGAGACACGGAAGACTGGAAGCGGTGAGTGGGAGAGAGTTGTGAGCGGCACGACGGTTGGTAACAAAAGGCTTTTACGGTTTCTGAATGTTGTTGAGTCGCGGTCTCTAAAGCTTGTGGTGGACAAAGCGAGGACCGACCCACTTATATCGTACCTCGGACTCTACATGGATAAGTTTTCGGGTTCTAGTAGAAACACAACAAAGATAACAATCACAAGGACACTAAAGGAAGAGCAGCAACTACATGATTTGTAA
Protein Sequence
- >AT2G28100.1
MNSQITLFFFFFSILSLSQISNSSSLLKPHPCPILPLPSSQQLQWQLGSMAMFLHFGPNTFTDSEWGTGKANPSIFNPTHLNASQWVQIAKDSGFSRVILTAKHHDGFCLWPSEYTDYSVKSSQWRNGAGDVVAELASAAKEAGIGLGLYLSPWDRHEQCYGKTLEYNEFYLSQMTELLTKYGEIKEVWLDGAKGDGEKDMEYFFDTWFSLIHQLQPKAVIFSDAGPDVRWIGDEAGLAGSTCWSLFNRTNAKIGDTEPSYSQEGDGYGQDWVPAECDVSIRPGWFWHASESPKPAVQLLDIYYNSVGRNCLFLLNVPPNSSGLISEQDIKVLEEFSEMKNSIFSNNLARKAFVNSSSIRGDQSSQFGPKNVLEEGLDKYWAPEENQNEWVLYLEFKDLVSFNVLEIREPIHMGQRIASFHLETRKTGSGEWERVVSGTTVGNKRLLRFLNVVESRSLKLVVDKARTDPLISYLGLYMDKFSGSSRNTTKITITRTLKEEQQLHDL