Gene Details:
- Gene ID: AT2G28050
- Gene Symbol: RPF7
- Gene Name: RNA processing factor 7
- Description: Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
- TAIR Accession: locus:2046218
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
Gene Ontology:
- GO:0005739 — located in — mitochondrion
- GO:0102682 — acts upstream of or within — mitochondrial mRNA 5-end processing
Function-related keywords:
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , sepal , flower , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure
Literature:
- Evolution of Arabidopsis microRNA families through duplication events. DOI: 10.1101/gr.4680506 ; PMID: 16520461
- Contrasting patterns of transposable-element insertion polymorphism and nucleotide diversity in autotetraploid and allotetraploid Arabidopsis species. DOI: 10.1534/genetics.107.085761 ; PMID: 18493073
- RNA processing factor 7 and polynucleotide phosphorylase are necessary for processing and stability of nad2 mRNA in Arabidopsis mitochondria. DOI: 10.4161/rna.29781 ; PMID: 25181358
Sequences:
cDNA Sequence
- >AT2G28050.1
ATGACTCCGCAATGCTTCTTGAAAACCCTGAAGACAGCTAAACAAACTTATACATTCTCAATCTACAAGCTTCTCCTCAATTCTTCCTCTATAAACCAAACTCTTGCTTCACCGGAAACACCACTCTCCGATCTCAATCTCTCCACTCTTCGCCGTATTTTATCAGACCCAGATATCAAATCCTGGAAATGCATCTCCCTTTTCAATTTCATCCTGGAGAACCCATCTCTTTTCTCATTCCAACCTGATCTCAGAACTCACTTGTCTCTCACTTTCCGTGTCTTGTCGGAGAGGAGATTCTCATATGCGAAAGAACTCTTGAAGCCTGTGGCTATTGATGACATTCTCAGGTACCCTTTTAATGTAATCGTCTCTAGCGTTATTGATGAATGTGGTTGTGAGAAGAAAGTTGTTGGGAGGTTCTTTAATTCGATGATTATGGTTTATTCAGACAATGGAAAATTTAGTGAAGTTGTTGAGGTTTTTGAGTATATGAAGAACAATGAAGTTAAGATTGATGAAAAGACTTGTACTTTGCATTTGTTGAATCTCAAGAGATGTGATCAGATGGAACTAGCTAGAGATTTCTTTAGTCTAATGGTTGAGTCAGGGATTGATGTTGTTACTGTGTACTCTTTAACTGTTGTTGTTACGGTGTTGTGTTGCAATGGGGAGATTACAAGAGCAAGAGAATTGGTGGAGGAGATGGGGTTGGTTAAAGGGGTTAAGGCTAATATTGTTACGTTTAAGTCGATGATTGGTTGTTGTGTGAAAAGATGGGATTTTGAAGAGTTGGATTTGGTTCTTAAGTTAATGGAGAAGGAAAGTGTGATGCTTGATCTCGATAGTTACAAGGTTTTGATTGATGGGTTTACTAGTTATGGTAAGGTTGAAGAAGCAGAGAGGTTGGTTTTGATGATGCATGATAAGAAGTTAAGAGTGGAGAGTTATCTGTATAATTTGATTATGAATGGGTACTCTCGGTTTGGACTAGTGGAGAAAGTGATTGAACTATATAGCGAAATGAGTTCTCGAGGTGTTACTCCGAACAAAGATACGTATTGGGTGTTGATGAATGGACTTTGCAAAGCTGGGAAAGTTTGTGAAGCGATGAGTTTTTTGAATGAGTTGCGAGTGAATGAGTTTGAGATTGATGAAGAAATGTATAGTACATTGAGTGAAGAGTGTTACAGAGTAGGAATGATAGATAAATCTTTGGAAGTGGTGGCTGAGATGATTAGGGATGGATTCATTCCTGGTGCTACGATATGTGAAAGATTAGCTGATTCGTTGTTTGAAGTAAACAGGAAAGAGGCACAAATGCTGATTACCATTGTGGTTAAGTGTGGTATTAAACCAAAATCGTGTTCTCAATATGGTCTGAAATGAAGATGTGGTCGTAGTCGAGGAAGACTTATCTTCTTTCTTATTACCTAAAGAGTGAGATGACACGCCTTTCCCTTACCAAGTCTCCAAGTCCAACTACAAAAACTTAATGTCGAAGATATGGTAATCTAGCTGACTAGCTCAACTAAGACTCAAAGATACACATGAAGTATAGTGATGTGCACATAGTTGTTCCATACCTCCAAAAGATACATTCTTTGAAAGATTTGTGGTTCCGGATGAAGATGAAAGGGAATGGTGACAGGAGAAGGATTGATATGGGGACCGAGGACGAGGAACGTTAGTTTGATTAGGTCCATGTTGCTAACTCTTTCATGACAACCAAAATAAGGTCGAGGGACTACTTGAAGATTGAAGGTAAATCGCAAAATTTTGA
CDS Sequence
- >AT2G28050.1
ATGACTCCGCAATGCTTCTTGAAAACCCTGAAGACAGCTAAACAAACTTATACATTCTCAATCTACAAGCTTCTCCTCAATTCTTCCTCTATAAACCAAACTCTTGCTTCACCGGAAACACCACTCTCCGATCTCAATCTCTCCACTCTTCGCCGTATTTTATCAGACCCAGATATCAAATCCTGGAAATGCATCTCCCTTTTCAATTTCATCCTGGAGAACCCATCTCTTTTCTCATTCCAACCTGATCTCAGAACTCACTTGTCTCTCACTTTCCGTGTCTTGTCGGAGAGGAGATTCTCATATGCGAAAGAACTCTTGAAGCCTGTGGCTATTGATGACATTCTCAGGTACCCTTTTAATGTAATCGTCTCTAGCGTTATTGATGAATGTGGTTGTGAGAAGAAAGTTGTTGGGAGGTTCTTTAATTCGATGATTATGGTTTATTCAGACAATGGAAAATTTAGTGAAGTTGTTGAGGTTTTTGAGTATATGAAGAACAATGAAGTTAAGATTGATGAAAAGACTTGTACTTTGCATTTGTTGAATCTCAAGAGATGTGATCAGATGGAACTAGCTAGAGATTTCTTTAGTCTAATGGTTGAGTCAGGGATTGATGTTGTTACTGTGTACTCTTTAACTGTTGTTGTTACGGTGTTGTGTTGCAATGGGGAGATTACAAGAGCAAGAGAATTGGTGGAGGAGATGGGGTTGGTTAAAGGGGTTAAGGCTAATATTGTTACGTTTAAGTCGATGATTGGTTGTTGTGTGAAAAGATGGGATTTTGAAGAGTTGGATTTGGTTCTTAAGTTAATGGAGAAGGAAAGTGTGATGCTTGATCTCGATAGTTACAAGGTTTTGATTGATGGGTTTACTAGTTATGGTAAGGTTGAAGAAGCAGAGAGGTTGGTTTTGATGATGCATGATAAGAAGTTAAGAGTGGAGAGTTATCTGTATAATTTGATTATGAATGGGTACTCTCGGTTTGGACTAGTGGAGAAAGTGATTGAACTATATAGCGAAATGAGTTCTCGAGGTGTTACTCCGAACAAAGATACGTATTGGGTGTTGATGAATGGACTTTGCAAAGCTGGGAAAGTTTGTGAAGCGATGAGTTTTTTGAATGAGTTGCGAGTGAATGAGTTTGAGATTGATGAAGAAATGTATAGTACATTGAGTGAAGAGTGTTACAGAGTAGGAATGATAGATAAATCTTTGGAAGTGGTGGCTGAGATGATTAGGGATGGATTCATTCCTGGTGCTACGATATGTGAAAGATTAGCTGATTCGTTGTTTGAAGTAAACAGGAAAGAGGCACAAATGCTGATTACCATTGTGGTTAAGTGTGGTATTAAACCAAAATCGTGTTCTCAATATGGTCTGAAATGA
Protein Sequence
- >AT2G28050.1
MTPQCFLKTLKTAKQTYTFSIYKLLLNSSSINQTLASPETPLSDLNLSTLRRILSDPDIKSWKCISLFNFILENPSLFSFQPDLRTHLSLTFRVLSERRFSYAKELLKPVAIDDILRYPFNVIVSSVIDECGCEKKVVGRFFNSMIMVYSDNGKFSEVVEVFEYMKNNEVKIDEKTCTLHLLNLKRCDQMELARDFFSLMVESGIDVVTVYSLTVVVTVLCCNGEITRARELVEEMGLVKGVKANIVTFKSMIGCCVKRWDFEELDLVLKLMEKESVMLDLDSYKVLIDGFTSYGKVEEAERLVLMMHDKKLRVESYLYNLIMNGYSRFGLVEKVIELYSEMSSRGVTPNKDTYWVLMNGLCKAGKVCEAMSFLNELRVNEFEIDEEMYSTLSEECYRVGMIDKSLEVVAEMIRDGFIPGATICERLADSLFEVNRKEAQMLITIVVKCGIKPKSCSQYGLK