Gene Details:
- Gene ID: AT2G27970
- Gene Symbol: CKS2
- Gene Name: CDK-subunit 2
- Description: CDK-subunit 2;(source:Araport11)
- TAIR Accession: locus:2057825
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0005052 — plant callus — callo (Spanish, exact), portion of plant callus tissue (exact), 植物カルス (Japanese, exact), callus (broad)
Gene Ontology:
- GO:0005515 — enables — protein binding
- GO:0005634 — located in — nucleus
- GO:0043130 — enables — ubiquitin binding
- GO:0007346 — involved in — regulation of mitotic cell cycle
- GO:0005737 — located in — cytoplasm
- GO:0000307 — part of — cyclin-dependent protein kinase holoenzyme complex
- GO:0019005 — part of — SCF ubiquitin ligase complex
- GO:0061575 — enables — cyclin-dependent protein serine/threonine kinase activator activity
- GO:0019901 — enables — protein kinase binding
- GO:0042393 — enables — histone binding
Function-related keywords:
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , plant sperm cell , pollen tube cell , pollen , plant callus
Literature:
- Genome-wide analysis of core cell cycle genes in Arabidopsis. DOI: 10.1105/tpc.010445 ; PMID: 11971144
- Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. DOI: 10.1104/pp.104.057935 ; PMID: 15908605
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. DOI: 10.1094/MPMI-19-0665 ; PMID: 16776300
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. DOI: 10.1104/pp.108.128108 ; PMID: 18923020
- Systematic localization of the Arabidopsis core cell cycle proteins reveals novel cell division complexes. DOI: 10.1104/pp.109.148643 ; PMID: 20018602
- Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. DOI: 10.1038/msb.2010.53 ; PMID: 20706207
- A genome-wide transcriptome profiling reveals the early molecular events during callus initiation in Arabidopsis multiple organs. DOI: 10.1016/j.ygeno.2012.05.013 ; PMID: 22664253
- Global analysis of the core cell cycle regulators of Arabidopsis identifies novel genes, reveals multiple and highly specific profiles of expression and provides a coherent model for plant cell cycle control. DOI: 10.1111/j.1365-313X.2004.02319.x ; PMID: 15686519
- The Arabidopsis COP9 signalosome is essential for G2 phase progression and genomic stability. DOI: 10.1242/dev.020743 ; PMID: 18434413
Sequences:
cDNA Sequence
- >AT2G27970.1
CGCCTCTAAGAAATTTGAAACTCAAAAAAATCAAAACACCCGTTGAGAAAATGCCCCTATAAATCCCCATAATTACTTCCTTACCACAATGCCTTTTTAATTCCCTTTCGCTTTCCCTCTTCTCCCCTAAAATTCATTTCGTTTCCGATCGCACTTCTTCTCAAGTAAATTTAATAGACGTTTGTTGGGTGATTTAAGAAGATGGGTCAGATCCAGTACTCCGACAAATATTTCGATGATACTTTCGAATACAGGCACGTTGTACTTCCTCCGGAAGTTGCTAAGCTTTTACCTAAGAATCGTATTCTTTCGGAAAGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTACGCGATTCATCGTCCTGAGCCACATATCATGCTCTTTAGGAGGCCTCTTAACTACCAGCAGGAGCACCAAGCTCAGATTGCTAAGTAGAAGAATTATGCAAAATTCTCCCTAATCTCTGTTTATGTCTCTCGTAAACGAGGTTTTAAAATACTACTCTGATGTTTTGTTCCTGTAGTTTTTTTTATTGTGTTCATGAATTCTCTTCAGTGGAGAATCATGTGAGTTTGGTAGAACAACTTTTAATGTTATGTTAAGTCTGGTCCTTTGCTAGACTTTGGTTGGATCCACGTTTGAACTTCTTCATGGTTAAGAATGAAGACGTTATTTCTCATGCTTATGTGCTTGTTTCATCATTTCAACCTCTTTTTATTGCTCCTCTTAGAGTCTTAAGTCCAT
CDS Sequence
- >AT2G27970.1
ATGGGTCAGATCCAGTACTCCGACAAATATTTCGATGATACTTTCGAATACAGGCACGTTGTACTTCCTCCGGAAGTTGCTAAGCTTTTACCTAAGAATCGTATTCTTTCGGAAAGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTACGCGATTCATCGTCCTGAGCCACATATCATGCTCTTTAGGAGGCCTCTTAACTACCAGCAGGAGCACCAAGCTCAGATTGCTAAGTAG
Protein Sequence
- >AT2G27970.1
MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQEHQAQIAK