Gene Details:

• Gene ID: AT2G27840
• Gene Symbol: HD2D, HDA13, HDT04, HDT4
• Gene Name: histone deacetylase 2D, HISTONE DEACETYLASE 13
• Description: histone deacetylase-related / HD-like protein;(source:Araport11)
• TAIR Accession: locus:2041990
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT2G27840.1     AT2G27840.2     AT2G27840.4     AT2G27840.3

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0005052  — plant callus — callo (Spanish, exact), portion of plant callus tissue (exact), 植物カルス (Japanese, exact), callus (broad)

Gene Ontology:

• GO:0005515  — enables — protein binding
• GO:0005634  — located in — nucleus
• GO:0030422  — acts upstream of or within — siRNA processing
• GO:0004407  — enables — histone deacetylase activity
• GO:0010162  — acts upstream of or within — seed dormancy process
• GO:0005730  — located in — nucleolus

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen ,  plant callus

Literature:

• Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.   DOI:  10.1093/nar/gkf660 ;  PMID:  12466527
• Effectiveness of RNA interference in transgenic plants.   DOI:  10.1016/j.febslet.2004.04.043 ;  PMID:  15147899
• Arabidopsis response regulator, ARR22, ectopic expression of which results in phenotypes similar to the wol cytokinin-receptor mutant.   DOI:  10.1093/pcp/pch128 ;  PMID:  15356332
• A transcriptome-based characterization of habituation in plant tissue culture.   DOI:  10.1104/pp.105.076059 ;  PMID:  16489130
• Gene expression profiles of Arabidopsis Cvi seeds during dormancy cycling indicate a common underlying dormancy control mechanism.   DOI:  10.1111/j.1365-313X.2006.02738.x ;  PMID:  16709196
• NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation.   DOI:  10.1101/gad.1765209 ;  PMID:  19204117
• A genome-wide transcriptome profiling reveals the early molecular events during callus initiation in Arabidopsis multiple organs.   DOI:  10.1016/j.ygeno.2012.05.013 ;  PMID:  22664253
• Combining association mapping and transcriptomics identify HD2B histone deacetylase as a genetic factor associated with seed dormancy in Arabidopsis thaliana.   DOI:  10.1111/tpj.12167 ;  PMID:  23464703
• Histone deacetylation-mediated cellular dedifferentiation in Arabidopsis.   DOI:  10.1016/j.jplph.2015.12.006 ;  PMID:  26724747
• Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.   DOI:  10.1093/nar/gkw067 ;  PMID:  26857545
• AtHD2D Gene Plays a Role in Plant Growth, Development, and Response to Abiotic Stresses in Arabidopsis thaliana.   DOI:  10.3389/fpls.2016.00310 ;  PMID:  27066015
• Histone deacetylase HD2D is involved in regulating plant development and flowering time in Arabidopsis.   DOI:  10.1080/15592324.2017.1300742 ;  PMID:  28737472
• A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana.   DOI:  10.1093/plcell/koab101 ;  PMID:  33822225
• Plant-specific HDT family histone deacetylases are nucleoplasmins.   DOI:  10.1093/plcell/koac275 ;  PMID:  36069647
• AtHD2D, a plant-specific histone deacetylase involved in abscisic acid response and lateral root development.   DOI:  10.1093/jxb/erac381 ;  PMID:  36125085
• MYB44-ENAP1/2 restricts HDT4 to regulate drought tolerance in Arabidopsis.   DOI:  10.1371/journal.pgen.1010473 ;  PMID:  36413574
• Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions.   DOI:  10.1091/mbc.e04-09-0791 ;  PMID:  15496452
• Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions.   DOI:  10.1091/mbc.e04-09-0791 ;  PMID:  15496452

Sequences: