Information report for AT2G26930
Gene Details
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Functional Descriptions
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0016114 — involved in — terpenoid biosynthetic process
- GO:0019288 — involved in — isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
- GO:0050515 — enables — 4-(cytidine 5-diphospho)-2-C-methyl-D-erythritol kinase activity GO:0050515 17520 F transferase activity IBA none PANTHER:PTN000466527|UniProtKB:P62615 Communication:501741973 2021-04-02 AT2G26930 gene:2039502 AT2G26930.1 located in chloroplast GO:0009507 175 C chloroplast ISM predicted protein features AnalysisReference:501780126 rkaundal 2018-08-31 AT2G26930 locus:2039503 AT2G26930 involved in isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway GO:0019288 10525 P other cellular processes IEA none UniPathway:UPA00056 AnalysisReference:501757242 2023-05-23 AT2G26930 locus:2039503 AT2G26930 involved in isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway GO:0019288 10525 P other metabolic processes IEA none UniPathway:UPA00056 AnalysisReference:501757242 2023-05-23 AT2G26930 locus:2039503 AT2G26930 involved in terpenoid biosynthetic process GO:0016114 7418 P biosynthetic process IEA none InterPro:IPR004424 AnalysisReference:501756966 2023-05-23 AT2G26930 locus:2039503 AT2G26930 located in chloroplast GO:0009507 175 C chloroplast HDA none Publication:501761766|PMID:25293756 dszymanski 2019-04-04 AT2G26930 locus:2039503 AT2G26930 enables 4-(cytidine 5-diphospho)-2-C-methyl-D-erythritol kinase activity
- GO:0050515 — enables — 4-(cytidine 5-diphospho)-2-C-methyl-D-erythritol kinase activity GO:0050515 17520 F kinase activity ISS Sequence similarity (homologue of/most closely related to) tomato Publication:501707059|PMID:12777052 TAIR 2006-02-28 AT2G26930 locus:2039503 AT2G26930 involved in terpenoid biosynthetic process GO:0016114 7418 P other metabolic processes IEA none InterPro:IPR004424 AnalysisReference:501756966 2023-05-23 AT2G26930 locus:2039503 AT2G26930 involved in isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway GO:0019288 10525 P biosynthetic process IEA none UniPathway:UPA00056 AnalysisReference:501757242 2023-05-23 AT2G26930 gene:2039502 AT2G26930.1 located in chloroplast GO:0009507 175 C chloroplast HDA none NONE Publication:501724486|PMID:18431481 kvanwijk 2021-04-07
Functional Keywords
Literature and News
- Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism. DOI: 10.1023/a:1023005504702 ; PMID: 12777052
- Expression profiling of cytokinin action in Arabidopsis. DOI: 10.1104/pp.103.021436 ; PMID: 12913156
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- The Arabidopsis IspH homolog is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. DOI: 10.1104/pp.104.058735 ; PMID: 15863698
- Chloroplast localization of methylerythritol 4-phosphate pathway enzymes and regulation of mitochondrial genes in ispD and ispE albino mutants in Arabidopsis. DOI: 10.1007/s11103-008-9297-5 ; PMID: 18236010
- The plastidial MEP pathway: unified nomenclature and resources. DOI: 10.1016/j.tplants.2008.09.003 ; PMID: 18948055
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism. DOI: 10.1023/a:1023005504702 ; PMID: 12777052
- The Arabidopsis IspH homolog is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. DOI: 10.1104/pp.104.058735 ; PMID: 15863698
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178VZZ2
- EMBL: CACRSJ010000105, CACSHJ010000088, LR881467
- AlphaFoldDB: A0A178VZZ2
- EnsemblPlants: AT2G26930.1
- Gramene: AT2G26930.1
- KEGG: ath:AT2G26930
- Orthologous matrix: ACDALWG
- ExpressionAtlas: AT2G26930
- InterPro: IPR004424, IPR006204, IPR013750
- PANTHER: PTHR43527, PTHR43527:SF2
- SUPFAM: SSF54211, SSF55060
- Gene3D: 3.30.230.10, 3.30.70.890
- OrthoDB: A0A178VZZ2
- SWISS-MODEL: A0A178VZZ2
Homologs
- Daucus carota DCAR_006325
- Oryza sativa OsCMK;OsIspE
Sequences
cDNA Sequence
- >AT2G26930.1
AAAAAAATAGGTGACATATCAGATCAAAGAGAAAAAAATAAGGTAGGAAGAAACAACAACAATGGCAACGGCTTCTCCTCCATTTATCTCAACTCTCAGCTTCACTCACTCTTCTTTCAAAACTTCTTCTTCTTCTTCATTTTCTCCGAAGCTTCTTCGACCCCTCTTAAGCTTTTCCGTCAAAGCTTCCAGAAAGCAAGTAGAGATAGTGTTTGATCCTGATGAGAGGCTTAATAAGATAGGTGATGATGTTGACAAAGAAGCTCCTTTGTCCAGGCTTAAGCTCTTCTCACCTTGCAAGATCAATGTTTTCTTGAGGATCACCGGAAAGCGAGAAGATGGGTTTCATGATTTAGCCTCTTTGTTTCATGTGATTAGCTTAGGAGACACTATTAAATTCTCATTGTCACCATCAAAGTCTAAAGATCGTTTGTCTACTAACGTTCAAGGAGTCCCTGTTGATGGGAGAAATCTGATTATAAAAGCACTTAACCTTTACAGGAAGAAAACTGGTAGTAACAGATTCTTCTGGATTCATTTAGATAAGAAGGTGCCTACCGGGGCTGGACTCGGTGGTGGAAGTAGTAATGCTGCAACTGCACTCTGGGCGGCAAATGAGCTCAATGGAGGTCTTGTCACTGAGAACGAACTCCAGGATTGGTCAAGTGAAATTGGGTCAGATATTCCTTTCTTCTTCTCGCATGGAGCTGCCTATTGTACCGGGAGAGGTGAGATTGTCCAAGACCTTCCTCCACCTTTTCCTCTTGATCTTCCGATGGTGCTCATAAAGCCCCGAGAAGCATGTTCCACTGCTGAAGTTTACAAACGTCTTCGTTTAGATCAGACGAGCAATATTAATCCCTTGACATTACTAGAGAATGTGACCAGCAATGGTGTGTCTCAAAGCATATGCGTAAACGATTTGGAACCGCCAGCGTTTTCAGTTCTTCCATCTCTAAAACGCTTGAAGCAACGGATAATAGCATCTGGACGTGGGGAATACGATGCTGTGTTTATGTCTGGGAGTGGAAGCACTATTATCGGTATTGGTTCACCAGATCCTCCTCAATTTATATATGATGATGAAGAATACAAGAACGTGTTCTTGTCTGAAGCAAACTTTATGACGCGTGAGGCTAATGAATGGTACAAAGAACCTGCTTCTGCAAATGCTACTACCTCATCCGCCGAATCTCGCATGGATTTCCAATGAGATGTTACAAACATGTAATTTTTTGAAAGGATTGATTTGAGATTCCTACTTGTGTTTCGAATAGTGAGTGGTTAACTAAAGGAGAAGATGCTTTAAATATAAATTAAAAGTTTTTTAAAAAG
CDS Sequence
- >AT2G26930.1
ATGGCAACGGCTTCTCCTCCATTTATCTCAACTCTCAGCTTCACTCACTCTTCTTTCAAAACTTCTTCTTCTTCTTCATTTTCTCCGAAGCTTCTTCGACCCCTCTTAAGCTTTTCCGTCAAAGCTTCCAGAAAGCAAGTAGAGATAGTGTTTGATCCTGATGAGAGGCTTAATAAGATAGGTGATGATGTTGACAAAGAAGCTCCTTTGTCCAGGCTTAAGCTCTTCTCACCTTGCAAGATCAATGTTTTCTTGAGGATCACCGGAAAGCGAGAAGATGGGTTTCATGATTTAGCCTCTTTGTTTCATGTGATTAGCTTAGGAGACACTATTAAATTCTCATTGTCACCATCAAAGTCTAAAGATCGTTTGTCTACTAACGTTCAAGGAGTCCCTGTTGATGGGAGAAATCTGATTATAAAAGCACTTAACCTTTACAGGAAGAAAACTGGTAGTAACAGATTCTTCTGGATTCATTTAGATAAGAAGGTGCCTACCGGGGCTGGACTCGGTGGTGGAAGTAGTAATGCTGCAACTGCACTCTGGGCGGCAAATGAGCTCAATGGAGGTCTTGTCACTGAGAACGAACTCCAGGATTGGTCAAGTGAAATTGGGTCAGATATTCCTTTCTTCTTCTCGCATGGAGCTGCCTATTGTACCGGGAGAGGTGAGATTGTCCAAGACCTTCCTCCACCTTTTCCTCTTGATCTTCCGATGGTGCTCATAAAGCCCCGAGAAGCATGTTCCACTGCTGAAGTTTACAAACGTCTTCGTTTAGATCAGACGAGCAATATTAATCCCTTGACATTACTAGAGAATGTGACCAGCAATGGTGTGTCTCAAAGCATATGCGTAAACGATTTGGAACCGCCAGCGTTTTCAGTTCTTCCATCTCTAAAACGCTTGAAGCAACGGATAATAGCATCTGGACGTGGGGAATACGATGCTGTGTTTATGTCTGGGAGTGGAAGCACTATTATCGGTATTGGTTCACCAGATCCTCCTCAATTTATATATGATGATGAAGAATACAAGAACGTGTTCTTGTCTGAAGCAAACTTTATGACGCGTGAGGCTAATGAATGGTACAAAGAACCTGCTTCTGCAAATGCTACTACCTCATCCGCCGAATCTCGCATGGATTTCCAATGA
Protein Sequence
- >AT2G26930.1
MATASPPFISTLSFTHSSFKTSSSSSFSPKLLRPLLSFSVKASRKQVEIVFDPDERLNKIGDDVDKEAPLSRLKLFSPCKINVFLRITGKREDGFHDLASLFHVISLGDTIKFSLSPSKSKDRLSTNVQGVPVDGRNLIIKALNLYRKKTGSNRFFWIHLDKKVPTGAGLGGGSSNAATALWAANELNGGLVTENELQDWSSEIGSDIPFFFSHGAAYCTGRGEIVQDLPPPFPLDLPMVLIKPREACSTAEVYKRLRLDQTSNINPLTLLENVTSNGVSQSICVNDLEPPAFSVLPSLKRLKQRIIASGRGEYDAVFMSGSGSTIIGIGSPDPPQFIYDDEEYKNVFLSEANFMTREANEWYKEPASANATTSSAESRMDFQ