Information report for AT2G26135
Gene Details
|
|
Functional Descriptions
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0000151 — part of — ubiquitin ligase complex
- GO:0061630 — enables — ubiquitin protein ligase activity
- GO:0005737 — is active in — cytoplasm
- GO:0032436 — involved in — positive regulation of proteasomal ubiquitin-dependent protein catabolic process
- GO:0006511 — involved in — ubiquitin-dependent protein catabolic process
- GO:0003676 — enables — nucleic acid binding
- GO:0005634 — located in — nucleus
- GO:0004523 — enables — RNA-DNA hybrid ribonuclease activity
- GO:0031624 — enables — ubiquitin conjugating enzyme binding
- GO:0008270 — enables — zinc ion binding
Functional Keywords
Literature and News
- Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. DOI: 10.1006/jmbi.2000.4315 ; PMID: 11152613
- Forward chemical genetic screens in Arabidopsis identify genes that influence sensitivity to the phytotoxic compound sulfamethoxazole. DOI: 10.1186/1471-2229-12-226 ; PMID: 23176361
- RBR-Type E3 Ligases and the Ubiquitin-Conjugating Enzyme UBC26 Regulate Abscisic Acid Receptor Levels and Signaling. DOI: 10.1104/pp.19.00898 ; PMID: 31699847
Gene Resources
- UniProt: F4ITM2
- EMBL: CP002685
- AlphaFoldDB: F4ITM2
- EnsemblPlants: AT2G26135.1
- Gramene: AT2G26135.1
- KEGG: ath:AT2G26135
- Orthologous matrix: INHISIY
- ExpressionAtlas: AT2G26135
- InterPro: IPR001841, IPR002156, IPR002867
- PANTHER: PTHR11685
- SUPFAM: SSF57850
- PROSITE: PS00518, PS50089, PS51873
- Gene3D: 1.20.120.1750, 3.30.40.10, 3.30.420.10
- Conserved Domain Database: cd22582, cd22584
Homologs
- Malus domestica MDP0000286589
- Pyrus bretschneideri Pbr037384.1, Pbr035981.1, Pbr011696.1
Sequences
cDNA Sequence
- >AT2G26135.1
ATGGAAGAGGAAGGCACTCTAGTACGAGCAGATAACCTAAAACATGCCGGAACACCATCACCGTCAAAATTCTCGCCGTACAGCCTTTACTTCAAGGGTTTGGTAAGTGAGGAGTCGCCCAAGTTATCAGCAGAATTTAGGGTTGCGATTTGCGGGTACAAGGATGGTCTGATGTTTCAGATGAAGGGACCGATTCATGACTCAGCCATTACACTTTTAGAGGCTGAGCTGATGGCATTGAAGTACGGTTTAAGCGAAGCCGTGACTTTGGGGATCAATCATATCTCAATCTGCTGCGATAACAATCAGATTTTCGAATGGGTCATGGGGAGATCCACGCCTCAGGAAGAAAACATTGCCATGCTAATCCGTGATGTGCAAGGCATCAGAAAACAGTTTACTTCTAGCATCGCTGTTCTGATAGATGTGCCTGCTCTGTTTCATCCGAAAAAGACTTGCACTATCTGTTTCGACGATGACATCAATGCTGATATGATGTTTTATATTGATCAATGTGGTCATATGTTTTGTTCCGAATGTGTGAAACGACATATTGAGGTGAGTCTACTTCAGGGAAGTTTGATAACATGTCCTAGTTATAGGTGCAAATCTAAGCTGACTTATGGAAGTTGTGTTAATATTTTGACACCTAAAGTAAAAGAGATGTGGATACAAAGGATGGGAGAGGATTCGATTCCTGTAACGGATAGAGTTTATTGCCCAAACCCGACGTGCTCAGCTTTAATGTCAGTAACCGAGCTCGATCAACTCACAGGAAGTAAGAGATGCTGTGTCAAATGCGGTGAATCCTTTTGCATCAAGTGCAAAGTTCCGTGGCATGATAACTTGTCGTGCAAACGTTACAAAAAGTTGCATTCAAATCGTACAACAAACGATAAACAGCTTAACGAACTAGCAAATCAGGAAAGTTGGCGTCAATGCAGCAAGTGTAAACATATGATTGAACTTACTCAAGGATGCGTCCGCGTAATTTGCAGATGTGGACATGAGTTTTGCTATGGATGTGGAGCTGATGCTGGATGTTGCTCTCATGGTCATGTACCGTATTTTTCAGTTGAACGTCGAGAGCCAGAAGTCCAAGCACTAGTGTTAATCGGTGTTGTTGTTGTTACTATGATATTCTTCTTTAGATAG
CDS Sequence
- >AT2G26135.1
ATGGAAGAGGAAGGCACTCTAGTACGAGCAGATAACCTAAAACATGCCGGAACACCATCACCGTCAAAATTCTCGCCGTACAGCCTTTACTTCAAGGGTTTGGTAAGTGAGGAGTCGCCCAAGTTATCAGCAGAATTTAGGGTTGCGATTTGCGGGTACAAGGATGGTCTGATGTTTCAGATGAAGGGACCGATTCATGACTCAGCCATTACACTTTTAGAGGCTGAGCTGATGGCATTGAAGTACGGTTTAAGCGAAGCCGTGACTTTGGGGATCAATCATATCTCAATCTGCTGCGATAACAATCAGATTTTCGAATGGGTCATGGGGAGATCCACGCCTCAGGAAGAAAACATTGCCATGCTAATCCGTGATGTGCAAGGCATCAGAAAACAGTTTACTTCTAGCATCGCTGTTCTGATAGATGTGCCTGCTCTGTTTCATCCGAAAAAGACTTGCACTATCTGTTTCGACGATGACATCAATGCTGATATGATGTTTTATATTGATCAATGTGGTCATATGTTTTGTTCCGAATGTGTGAAACGACATATTGAGGTGAGTCTACTTCAGGGAAGTTTGATAACATGTCCTAGTTATAGGTGCAAATCTAAGCTGACTTATGGAAGTTGTGTTAATATTTTGACACCTAAAGTAAAAGAGATGTGGATACAAAGGATGGGAGAGGATTCGATTCCTGTAACGGATAGAGTTTATTGCCCAAACCCGACGTGCTCAGCTTTAATGTCAGTAACCGAGCTCGATCAACTCACAGGAAGTAAGAGATGCTGTGTCAAATGCGGTGAATCCTTTTGCATCAAGTGCAAAGTTCCGTGGCATGATAACTTGTCGTGCAAACGTTACAAAAAGTTGCATTCAAATCGTACAACAAACGATAAACAGCTTAACGAACTAGCAAATCAGGAAAGTTGGCGTCAATGCAGCAAGTGTAAACATATGATTGAACTTACTCAAGGATGCGTCCGCGTAATTTGCAGATGTGGACATGAGTTTTGCTATGGATGTGGAGCTGATGCTGGATGTTGCTCTCATGGTCATGTACCGTATTTTTCAGTTGAACGTCGAGAGCCAGAAGTCCAAGCACTAGTGTTAATCGGTGTTGTTGTTGTTACTATGATATTCTTCTTTAGATAG
Protein Sequence
- >AT2G26135.1
MEEEGTLVRADNLKHAGTPSPSKFSPYSLYFKGLVSEESPKLSAEFRVAICGYKDGLMFQMKGPIHDSAITLLEAELMALKYGLSEAVTLGINHISICCDNNQIFEWVMGRSTPQEENIAMLIRDVQGIRKQFTSSIAVLIDVPALFHPKKTCTICFDDDINADMMFYIDQCGHMFCSECVKRHIEVSLLQGSLITCPSYRCKSKLTYGSCVNILTPKVKEMWIQRMGEDSIPVTDRVYCPNPTCSALMSVTELDQLTGSKRCCVKCGESFCIKCKVPWHDNLSCKRYKKLHSNRTTNDKQLNELANQESWRQCSKCKHMIELTQGCVRVICRCGHEFCYGCGADAGCCSHGHVPYFSVERREPEVQALVLIGVVVVTMIFFFR